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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 198, 243 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 306 |
| AccB1I | GGYRCC | 2 cut(s) | 440, 461 |
| AccBSI | CCGCTC | 2 cut(s) | 271, 353 |
| AciI | CCGC | 4 cut(s) | 271, 319, 340, 353 |
| AclWI | GGATC | 2 cut(s) | 131, 550 |
| AcuI | CTGAAG | 1 cut(s) | 126 |
| AcvI | CACGTG | 2 cut(s) | 362, 380 |
| AcyI | GRCGYC | 2 cut(s) | 441, 462 |
| AdeI | CACNNNGTG | 2 cut(s) | 365, 491 |
| AfaI | GTAC | 1 cut(s) | 103 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 257, 258, 381 |
| AflIII | ACRYGT | 2 cut(s) | 359, 377 |
| AgsI | TTSAA | 3 cut(s) | 204, 505, 598 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 23 |
| AluBI | AGCT | 4 cut(s) | 40, 142, 164, 428 |
| AluI | AGCT | 4 cut(s) | 40, 142, 164, 428 |
| Alw21I | GWGCWC | 2 cut(s) | 496, 618 |
| Alw26I | GTCTC | 1 cut(s) | 564 |
| Alw44I | GTGCAC | 2 cut(s) | 492, 614 |
| AlwI | GGATC | 2 cut(s) | 131, 550 |
| ApaLI | GTGCAC | 2 cut(s) | 492, 614 |
| ApeKI | GCWGC | 1 cut(s) | 626 |
| AspA2I | CCTAGG | 1 cut(s) | 473 |
| AspLEI | GCGC | 3 cut(s) | 264, 443, 464 |
| AspS9I | GGNCC | 1 cut(s) | 308 |
| AsuHPI | GGTGA | 1 cut(s) | 574 |
| AvaII | GGWCC | 1 cut(s) | 308 |
| AvrII | CCTAGG | 1 cut(s) | 473 |
| BaeGI | GKGCMC | 2 cut(s) | 496, 618 |
| BanI | GGYRCC | 2 cut(s) | 440, 461 |
| BauI | CACGAG | 3 cut(s) | 127, 185, 429 |
| BbrPI | CACGTG | 2 cut(s) | 362, 380 |
| BbsI | GAAGAC | 1 cut(s) | 56 |
| Bbv12I | GWGCWC | 2 cut(s) | 496, 618 |
| BbvI | GCAGC | 1 cut(s) | 613 |
| BciVI | GTATCC | 1 cut(s) | 349 |
| BcoDI | GTCTC | 1 cut(s) | 564 |
| BfaI | CTAG | 2 cut(s) | 279, 474 |
| BfmI | CTRYAG | 1 cut(s) | 627 |
| BfoI | RGCGCY | 2 cut(s) | 444, 465 |
| BfuI | GTATCC | 1 cut(s) | 349 |
| BisI | GCNGC | 1 cut(s) | 627 |
| BlnI | CCTAGG | 1 cut(s) | 473 |
| BlsI | GCNGC | 1 cut(s) | 628 |
| Bme18I | GGWCC | 1 cut(s) | 308 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 23 |
| BmgT120I | GGNCC | 1 cut(s) | 308 |
| BmiI | GGNNCC | 5 cut(s) | 275, 309, 421, 442, 463 |
| BmsI | GCATC | 1 cut(s) | 613 |
| BpiI | GAAGAC | 1 cut(s) | 56 |
| Bsa29I | ATCGAT | 1 cut(s) | 535 |
| BsaAI | YACGTR | 2 cut(s) | 362, 380 |
| BsaBI | GATNNNNATC | 1 cut(s) | 541 |
| BsaHI | GRCGYC | 2 cut(s) | 441, 462 |
| BsaJI | CCNNGG | 3 cut(s) | 444, 473, 585 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 376, 406 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 257, 258, 381 |
| Bse3DI | GCAATG | 1 cut(s) | 376 |
| Bse8I | GATNNNNATC | 1 cut(s) | 541 |
| BseCI | ATCGAT | 1 cut(s) | 535 |
| BseDI | CCNNGG | 3 cut(s) | 444, 473, 585 |
| BseGI | GGATG | 1 cut(s) | 628 |
| BseJI | GATNNNNATC | 1 cut(s) | 541 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 257, 258, 381 |
| BseMI | GCAATG | 1 cut(s) | 376 |
| BseMII | CTCAG | 1 cut(s) | 156 |
| BseSI | GKGCMC | 2 cut(s) | 496, 618 |
| BseXI | GCAGC | 1 cut(s) | 613 |
| BshNI | GGYRCC | 2 cut(s) | 440, 461 |
| BshVI | ATCGAT | 1 cut(s) | 535 |
| BsiHKAI | GWGCWC | 2 cut(s) | 496, 618 |
| BslFI | GGGAC | 2 cut(s) | 303, 312 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 257, 258, 381 |
| BsmAI | GTCTC | 1 cut(s) | 564 |
| BsmBI | CGTCTC | 1 cut(s) | 564 |
| BsmFI | GGGAC | 2 cut(s) | 303, 312 |
| Bsp1286I | GDGCHC | 2 cut(s) | 496, 618 |
| Bsp143I | GATC | 2 cut(s) | 123, 542 |
| Bsp19I | CCATGG | 2 cut(s) | 444, 585 |
| BspACI | CCGC | 4 cut(s) | 271, 319, 340, 353 |
| BspCNI | CTCAG | 1 cut(s) | 157 |
| BspDI | ATCGAT | 1 cut(s) | 535 |
| BspHI | TCATGA | 1 cut(s) | 229 |
| BspLI | GGNNCC | 5 cut(s) | 275, 309, 421, 442, 463 |
| BspMAI | CTGCAG | 1 cut(s) | 631 |
| BspPI | GGATC | 2 cut(s) | 131, 550 |
| BspT107I | GGYRCC | 2 cut(s) | 440, 461 |
| BsrBI | CCGCTC | 2 cut(s) | 271, 353 |
| BsrDI | GCAATG | 1 cut(s) | 376 |
| BssECI | CCNNGG | 3 cut(s) | 444, 473, 585 |
| BssMI | GATC | 2 cut(s) | 123, 542 |
| BssNI | GRCGYC | 2 cut(s) | 441, 462 |
| BssSI | CACGAG | 3 cut(s) | 127, 185, 429 |
| BssT1I | CCWWGG | 3 cut(s) | 444, 473, 585 |
| Bst2BI | CACGAG | 3 cut(s) | 127, 185, 429 |
| Bst4CI | ACNGT | 1 cut(s) | 101 |
| BstACI | GRCGYC | 2 cut(s) | 441, 462 |
| BstBAI | YACGTR | 2 cut(s) | 362, 380 |
| BstDEI | CTNAG | 2 cut(s) | 165, 219 |
| BstDSI | CCRYGG | 2 cut(s) | 444, 585 |
| BstF5I | GGATG | 1 cut(s) | 628 |
| BstH2I | RGCGCY | 2 cut(s) | 444, 465 |
| BstHHI | GCGC | 3 cut(s) | 264, 443, 464 |
| BstKTI | GATC | 2 cut(s) | 126, 545 |
| BstMAI | GTCTC | 1 cut(s) | 564 |
| BstMBI | GATC | 2 cut(s) | 123, 542 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 268 |
| BstSFI | CTRYAG | 1 cut(s) | 627 |
| BstSLI | GKGCMC | 2 cut(s) | 496, 618 |
| BstV1I | GCAGC | 1 cut(s) | 613 |
| BstV2I | GAAGAC | 1 cut(s) | 56 |
| BstX2I | RGATCY | 1 cut(s) | 542 |
| BstYI | RGATCY | 1 cut(s) | 542 |
| Bsu15I | ATCGAT | 1 cut(s) | 535 |
| BsuI | GTATCC | 1 cut(s) | 349 |
| BsuTUI | ATCGAT | 1 cut(s) | 535 |
| BtgI | CCRYGG | 2 cut(s) | 444, 585 |
| BtsCI | GGATG | 1 cut(s) | 628 |
| CciI | TCATGA | 1 cut(s) | 229 |
| CfoI | GCGC | 3 cut(s) | 264, 443, 464 |
| Cfr13I | GGNCC | 1 cut(s) | 308 |
| ClaI | ATCGAT | 1 cut(s) | 535 |
| Csp6I | GTAC | 1 cut(s) | 102 |
| CviAII | CATG | 4 cut(s) | 173, 230, 445, 586 |
| CviJI | RGCY | 6 cut(s) | 40, 77, 142, 164, 422, 428 |
| CviKI_1 | RGCY | 6 cut(s) | 40, 77, 142, 164, 422, 428 |
| CviQI | GTAC | 1 cut(s) | 102 |
| DdeI | CTNAG | 2 cut(s) | 165, 219 |
| DinI | GGCGCC | 2 cut(s) | 442, 463 |
| DpnI | GATC | 2 cut(s) | 125, 544 |
| DpnII | GATC | 2 cut(s) | 123, 542 |
| DraIII | CACNNNGTG | 2 cut(s) | 365, 491 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 306 |
| DriI | GACNNNNNGTC | 1 cut(s) | 23 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 306 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 23 |
| Eco130I | CCWWGG | 3 cut(s) | 444, 473, 585 |
| Eco47I | GGWCC | 1 cut(s) | 308 |
| Eco57I | CTGAAG | 1 cut(s) | 126 |
| Eco72I | CACGTG | 2 cut(s) | 362, 380 |
| EcoT14I | CCWWGG | 3 cut(s) | 444, 473, 585 |
| EgeI | GGCGCC | 2 cut(s) | 442, 463 |
| EheI | GGCGCC | 2 cut(s) | 442, 463 |
| ErhI | CCWWGG | 3 cut(s) | 444, 473, 585 |
| Esp3I | CGTCTC | 1 cut(s) | 564 |
| FaeI | CATG | 4 cut(s) | 176, 233, 448, 589 |
| FaqI | GGGAC | 2 cut(s) | 303, 312 |
| FatI | CATG | 4 cut(s) | 172, 229, 444, 585 |
| Fnu4HI | GCNGC | 1 cut(s) | 627 |
| FokI | GGATG | 1 cut(s) | 635 |
| Fsp4HI | GCNGC | 1 cut(s) | 627 |
| FspBI | CTAG | 2 cut(s) | 279, 474 |
| GlaI | GCGC | 3 cut(s) | 263, 442, 463 |
| GluI | GCNGC | 1 cut(s) | 627 |
| HaeII | RGCGCY | 2 cut(s) | 444, 465 |
| HhaI | GCGC | 3 cut(s) | 264, 443, 464 |
| Hin1I | GRCGYC | 2 cut(s) | 441, 462 |
| Hin1II | CATG | 4 cut(s) | 176, 233, 448, 589 |
| Hin6I | GCGC | 3 cut(s) | 262, 441, 462 |
| HinP1I | GCGC | 3 cut(s) | 262, 441, 462 |
| HinfI | GANTC | 1 cut(s) | 52 |
| HphI | GGTGA | 1 cut(s) | 574 |
| Hpy166II | GTNNAC | 3 cut(s) | 17, 494, 616 |
| Hpy188III | TCNNGA | 5 cut(s) | 127, 187, 204, 230, 329 |
| Hpy8I | GTNNAC | 3 cut(s) | 17, 494, 616 |
| HpyAV | CCTTC | 3 cut(s) | 73, 326, 499 |
| HpyCH4III | ACNGT | 1 cut(s) | 101 |
| HpyCH4IV | ACGT | 5 cut(s) | 301, 361, 379, 490, 573 |
| HpyCH4V | TGCA | 4 cut(s) | 248, 494, 616, 629 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 268 |
| HpyF3I | CTNAG | 2 cut(s) | 165, 219 |
| HpySE526I | ACGT | 5 cut(s) | 301, 361, 379, 490, 573 |
| Hsp92I | GRCGYC | 2 cut(s) | 441, 462 |
| Hsp92II | CATG | 4 cut(s) | 176, 233, 448, 589 |
| HspAI | GCGC | 3 cut(s) | 262, 441, 462 |
| KasI | GGCGCC | 2 cut(s) | 440, 461 |
| Kzo9I | GATC | 2 cut(s) | 123, 542 |
| LmnI | GCTCC | 3 cut(s) | 268, 350, 419 |
| LpnPI | CCDG | 2 cut(s) | 36, 102 |
| Lsp1109I | GCAGC | 1 cut(s) | 613 |
| LweI | GCATC | 1 cut(s) | 613 |
| MaeI | CTAG | 2 cut(s) | 279, 474 |
| MaeII | ACGT | 5 cut(s) | 301, 361, 379, 490, 573 |
| MaeIII | GTNAC | 1 cut(s) | 25 |
| MalI | GATC | 2 cut(s) | 125, 544 |
| MbiI | CCGCTC | 2 cut(s) | 271, 353 |
| MboI | GATC | 2 cut(s) | 123, 542 |
| MboII | GAAGA | 5 cut(s) | 61, 563, 566, 569, 617 |
| MfeI | CAATTG | 1 cut(s) | 500 |
| MflI | RGATCY | 1 cut(s) | 542 |
| MhlI | GDGCHC | 2 cut(s) | 496, 618 |
| MluCI | AATT | 5 cut(s) | 42, 193, 199, 238, 500 |
| Mly113I | GGCGCC | 2 cut(s) | 441, 462 |
| MlyI | GAGTC | 1 cut(s) | 46 |
| MseI | TTAA | 1 cut(s) | 576 |
| MslI | CAYNNNNRTG | 3 cut(s) | 185, 537, 621 |
| MunI | CAATTG | 1 cut(s) | 500 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 268 |
| NarI | GGCGCC | 2 cut(s) | 441, 462 |
| NcoI | CCATGG | 2 cut(s) | 444, 585 |
| NdeII | GATC | 2 cut(s) | 123, 542 |
| NlaIII | CATG | 4 cut(s) | 176, 233, 448, 589 |
| NlaIV | GGNNCC | 5 cut(s) | 275, 309, 421, 442, 463 |
| NmuCI | GTSAC | 1 cut(s) | 25 |
| PagI | TCATGA | 1 cut(s) | 229 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 487 |
| PkrI | GCNGC | 1 cut(s) | 628 |
| PleI | GAGTC | 1 cut(s) | 46 |
| PluTI | GGCGCC | 2 cut(s) | 444, 465 |
| PmaCI | CACGTG | 2 cut(s) | 362, 380 |
| PmlI | CACGTG | 2 cut(s) | 362, 380 |
| PpsI | GAGTC | 1 cut(s) | 46 |
| Ppu21I | YACGTR | 2 cut(s) | 362, 380 |
| PsiI | TTATAA | 2 cut(s) | 198, 243 |
| PspCI | CACGTG | 2 cut(s) | 362, 380 |
| PspN4I | GGNNCC | 5 cut(s) | 275, 309, 421, 442, 463 |
| PspPI | GGNCC | 1 cut(s) | 308 |
| PstI | CTGCAG | 1 cut(s) | 631 |
| PsuI | RGATCY | 1 cut(s) | 542 |
| RsaI | GTAC | 1 cut(s) | 103 |
| RsaNI | GTAC | 1 cut(s) | 102 |
| RseI | CAYNNNNRTG | 3 cut(s) | 185, 537, 621 |
| SaqAI | TTAA | 1 cut(s) | 576 |
| SatI | GCNGC | 1 cut(s) | 627 |
| Sau3AI | GATC | 2 cut(s) | 123, 542 |
| Sau96I | GGNCC | 1 cut(s) | 308 |
| SchI | GAGTC | 1 cut(s) | 46 |
| SduI | GDGCHC | 2 cut(s) | 496, 618 |
| SfaNI | GCATC | 1 cut(s) | 613 |
| SfcI | CTRYAG | 1 cut(s) | 627 |
| SfoI | GGCGCC | 2 cut(s) | 442, 463 |
| SinI | GGWCC | 1 cut(s) | 308 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 185, 537, 621 |
| Sse9I | AATT | 5 cut(s) | 42, 193, 199, 238, 500 |
| SsiI | CCGC | 4 cut(s) | 271, 319, 340, 353 |
| SspDI | GGCGCC | 2 cut(s) | 440, 461 |
| SspMI | CTAG | 2 cut(s) | 279, 474 |
| StyI | CCWWGG | 3 cut(s) | 444, 473, 585 |
| TaaI | ACNGT | 1 cut(s) | 101 |
| TaiI | ACGT | 5 cut(s) | 304, 364, 382, 493, 576 |
| TaqI | TCGA | 1 cut(s) | 535 |
| TasI | AATT | 5 cut(s) | 42, 193, 199, 238, 500 |
| TatI | WGTACW | 1 cut(s) | 101 |
| Tru1I | TTAA | 1 cut(s) | 576 |
| Tru9I | TTAA | 1 cut(s) | 576 |
| TseFI | GTSAC | 1 cut(s) | 25 |
| TseI | GCWGC | 1 cut(s) | 626 |
| Tsp45I | GTSAC | 1 cut(s) | 25 |
| TspDTI | ATGAA | 4 cut(s) | 125, 218, 618, 624 |
| TspGWI | ACGGA | 2 cut(s) | 136, 398 |
| VneI | GTGCAC | 2 cut(s) | 492, 614 |
| VpaK11BI | GGWCC | 1 cut(s) | 308 |
| XmaJI | CCTAGG | 1 cut(s) | 473 |
| XspI | CTAG | 2 cut(s) | 279, 474 |