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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 501 |
| Acc65I | GGTACC | 1 cut(s) | 341 |
| AccB1I | GGYRCC | 1 cut(s) | 341 |
| AccII | CGCG | 1 cut(s) | 104 |
| AciI | CCGC | 1 cut(s) | 133 |
| AfaI | GTAC | 2 cut(s) | 156, 343 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 523 |
| AgsI | TTSAA | 3 cut(s) | 32, 148, 359 |
| AluBI | AGCT | 5 cut(s) | 20, 44, 65, 334, 432 |
| AluI | AGCT | 5 cut(s) | 20, 44, 65, 334, 432 |
| Alw26I | GTCTC | 1 cut(s) | 268 |
| ApeKI | GCWGC | 2 cut(s) | 20, 23 |
| Asp718I | GGTACC | 1 cut(s) | 341 |
| AspLEI | GCGC | 1 cut(s) | 106 |
| AspS9I | GGNCC | 1 cut(s) | 503 |
| AvaII | GGWCC | 1 cut(s) | 503 |
| BaeGI | GKGCMC | 1 cut(s) | 445 |
| BanI | GGYRCC | 1 cut(s) | 341 |
| BbsI | GAAGAC | 2 cut(s) | 248, 460 |
| BbvI | GCAGC | 2 cut(s) | 7, 10 |
| BccI | CCATC | 3 cut(s) | 80, 114, 190 |
| BcoDI | GTCTC | 1 cut(s) | 268 |
| BfaI | CTAG | 2 cut(s) | 396, 429 |
| BfmI | CTRYAG | 1 cut(s) | 433 |
| BisI | GCNGC | 2 cut(s) | 21, 24 |
| BlsI | GCNGC | 2 cut(s) | 22, 25 |
| Bme18I | GGWCC | 1 cut(s) | 503 |
| BmgT120I | GGNCC | 1 cut(s) | 503 |
| BmiI | GGNNCC | 2 cut(s) | 343, 409 |
| BpiI | GAAGAC | 2 cut(s) | 248, 460 |
| BpmI | CTGGAG | 1 cut(s) | 443 |
| BsaJI | CCNNGG | 1 cut(s) | 447 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 523 |
| BseDI | CCNNGG | 1 cut(s) | 447 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 523 |
| BseSI | GKGCMC | 1 cut(s) | 445 |
| BseXI | GCAGC | 2 cut(s) | 7, 10 |
| BsgI | GTGCAG | 1 cut(s) | 252 |
| Bsh1236I | CGCG | 1 cut(s) | 104 |
| BshNI | GGYRCC | 1 cut(s) | 341 |
| BslFI | GGGAC | 1 cut(s) | 497 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 523 |
| BsmAI | GTCTC | 1 cut(s) | 268 |
| BsmBI | CGTCTC | 1 cut(s) | 268 |
| BsmFI | GGGAC | 1 cut(s) | 497 |
| BsmI | GAATGC | 1 cut(s) | 310 |
| Bsp1286I | GDGCHC | 1 cut(s) | 445 |
| Bsp143I | GATC | 1 cut(s) | 234 |
| BspACI | CCGC | 1 cut(s) | 133 |
| BspFNI | CGCG | 1 cut(s) | 104 |
| BspHI | TCATGA | 3 cut(s) | 81, 318, 328 |
| BspLI | GGNNCC | 2 cut(s) | 343, 409 |
| BspT107I | GGYRCC | 1 cut(s) | 341 |
| BssECI | CCNNGG | 1 cut(s) | 447 |
| BssMI | GATC | 1 cut(s) | 234 |
| BssT1I | CCWWGG | 1 cut(s) | 447 |
| Bst4CI | ACNGT | 1 cut(s) | 536 |
| BstDEI | CTNAG | 2 cut(s) | 282, 474 |
| BstFNI | CGCG | 1 cut(s) | 104 |
| BstHHI | GCGC | 1 cut(s) | 106 |
| BstKTI | GATC | 1 cut(s) | 237 |
| BstMAI | GTCTC | 1 cut(s) | 268 |
| BstMBI | GATC | 1 cut(s) | 234 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 32, 41, 62 |
| BstSFI | CTRYAG | 1 cut(s) | 433 |
| BstSLI | GKGCMC | 1 cut(s) | 445 |
| BstUI | CGCG | 1 cut(s) | 104 |
| BstV1I | GCAGC | 2 cut(s) | 7, 10 |
| BstV2I | GAAGAC | 2 cut(s) | 248, 460 |
| BtsIMutI | CAGTG | 1 cut(s) | 269 |
| CciI | TCATGA | 3 cut(s) | 81, 318, 328 |
| CfoI | GCGC | 1 cut(s) | 106 |
| Cfr13I | GGNCC | 1 cut(s) | 503 |
| CseI | GACGC | 2 cut(s) | 110, 465 |
| Csp6I | GTAC | 2 cut(s) | 155, 342 |
| CviAII | CATG | 5 cut(s) | 82, 94, 319, 329, 346 |
| CviJI | RGCY | 7 cut(s) | 20, 44, 65, 71, 176, 334, 432 |
| CviKI_1 | RGCY | 7 cut(s) | 20, 44, 65, 71, 176, 334, 432 |
| CviQI | GTAC | 2 cut(s) | 155, 342 |
| DdeI | CTNAG | 2 cut(s) | 282, 474 |
| DpnI | GATC | 1 cut(s) | 236 |
| DpnII | GATC | 1 cut(s) | 234 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 501 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 501 |
| Eco130I | CCWWGG | 1 cut(s) | 447 |
| Eco47I | GGWCC | 1 cut(s) | 503 |
| EcoT14I | CCWWGG | 1 cut(s) | 447 |
| ErhI | CCWWGG | 1 cut(s) | 447 |
| Esp3I | CGTCTC | 1 cut(s) | 268 |
| FaeI | CATG | 5 cut(s) | 85, 97, 322, 332, 349 |
| FaqI | GGGAC | 1 cut(s) | 497 |
| FatI | CATG | 5 cut(s) | 81, 93, 318, 328, 345 |
| Fnu4HI | GCNGC | 2 cut(s) | 21, 24 |
| Fsp4HI | GCNGC | 2 cut(s) | 21, 24 |
| FspBI | CTAG | 2 cut(s) | 396, 429 |
| GlaI | GCGC | 1 cut(s) | 105 |
| GluI | GCNGC | 2 cut(s) | 21, 24 |
| GsuI | CTGGAG | 1 cut(s) | 443 |
| HgaI | GACGC | 2 cut(s) | 110, 465 |
| HhaI | GCGC | 1 cut(s) | 106 |
| Hin1II | CATG | 5 cut(s) | 85, 97, 322, 332, 349 |
| Hin6I | GCGC | 1 cut(s) | 104 |
| HinP1I | GCGC | 1 cut(s) | 104 |
| HinfI | GANTC | 2 cut(s) | 244, 425 |
| Hpy166II | GTNNAC | 1 cut(s) | 506 |
| Hpy188I | TCNGA | 1 cut(s) | 294 |
| Hpy188III | TCNNGA | 6 cut(s) | 82, 238, 319, 329, 422, 492 |
| Hpy8I | GTNNAC | 1 cut(s) | 506 |
| HpyAV | CCTTC | 2 cut(s) | 188, 521 |
| HpyCH4III | ACNGT | 1 cut(s) | 536 |
| HpyCH4IV | ACGT | 3 cut(s) | 313, 351, 496 |
| HpyCH4V | TGCA | 2 cut(s) | 269, 308 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 32, 41, 62 |
| HpyF3I | CTNAG | 2 cut(s) | 282, 474 |
| HpySE526I | ACGT | 3 cut(s) | 313, 351, 496 |
| Hsp92II | CATG | 5 cut(s) | 85, 97, 322, 332, 349 |
| HspAI | GCGC | 1 cut(s) | 104 |
| KpnI | GGTACC | 1 cut(s) | 345 |
| Kzo9I | GATC | 1 cut(s) | 234 |
| LmnI | GCTCC | 2 cut(s) | 111, 463 |
| LpnPI | CCDG | 5 cut(s) | 294, 407, 414, 477, 486 |
| Lsp1109I | GCAGC | 2 cut(s) | 7, 10 |
| MaeI | CTAG | 2 cut(s) | 396, 429 |
| MaeII | ACGT | 3 cut(s) | 313, 351, 496 |
| MalI | GATC | 1 cut(s) | 236 |
| MboI | GATC | 1 cut(s) | 234 |
| MboII | GAAGA | 3 cut(s) | 253, 394, 465 |
| MhlI | GDGCHC | 1 cut(s) | 445 |
| MluCI | AATT | 3 cut(s) | 276, 286, 487 |
| MlyI | GAGTC | 2 cut(s) | 238, 434 |
| MnlI | CCTC | 5 cut(s) | 21, 46, 140, 315, 517 |
| MseI | TTAA | 1 cut(s) | 538 |
| MslI | CAYNNNNRTG | 2 cut(s) | 80, 96 |
| Mva1269I | GAATGC | 1 cut(s) | 310 |
| MvnI | CGCG | 1 cut(s) | 104 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 32, 41, 62 |
| NdeII | GATC | 1 cut(s) | 234 |
| NlaIII | CATG | 5 cut(s) | 85, 97, 322, 332, 349 |
| NlaIV | GGNNCC | 2 cut(s) | 343, 409 |
| PagI | TCATGA | 3 cut(s) | 81, 318, 328 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 463 |
| PctI | GAATGC | 1 cut(s) | 310 |
| PkrI | GCNGC | 2 cut(s) | 22, 25 |
| PleI | GAGTC | 2 cut(s) | 238, 433 |
| PpsI | GAGTC | 2 cut(s) | 238, 433 |
| PspN4I | GGNNCC | 2 cut(s) | 343, 409 |
| PspPI | GGNCC | 1 cut(s) | 503 |
| RsaI | GTAC | 2 cut(s) | 156, 343 |
| RsaNI | GTAC | 2 cut(s) | 155, 342 |
| RseI | CAYNNNNRTG | 2 cut(s) | 80, 96 |
| SaqAI | TTAA | 1 cut(s) | 538 |
| SatI | GCNGC | 2 cut(s) | 21, 24 |
| Sau3AI | GATC | 1 cut(s) | 234 |
| Sau96I | GGNCC | 1 cut(s) | 503 |
| SchI | GAGTC | 2 cut(s) | 238, 434 |
| SduI | GDGCHC | 1 cut(s) | 445 |
| SfcI | CTRYAG | 1 cut(s) | 433 |
| SinI | GGWCC | 1 cut(s) | 503 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 80, 96 |
| Sse9I | AATT | 3 cut(s) | 276, 286, 487 |
| SsiI | CCGC | 1 cut(s) | 133 |
| SspMI | CTAG | 2 cut(s) | 396, 429 |
| StyI | CCWWGG | 1 cut(s) | 447 |
| TaaI | ACNGT | 1 cut(s) | 536 |
| TaiI | ACGT | 3 cut(s) | 316, 354, 499 |
| TaqI | TCGA | 1 cut(s) | 237 |
| TasI | AATT | 3 cut(s) | 276, 286, 487 |
| TatI | WGTACW | 1 cut(s) | 154 |
| Tru1I | TTAA | 1 cut(s) | 538 |
| Tru9I | TTAA | 1 cut(s) | 538 |
| TscAI | CASTG | 1 cut(s) | 276 |
| TseI | GCWGC | 2 cut(s) | 20, 23 |
| TspDTI | ATGAA | 5 cut(s) | 75, 110, 170, 317, 362 |
| TspRI | CASTG | 1 cut(s) | 276 |
| VpaK11BI | GGWCC | 1 cut(s) | 503 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 418 |
| XspI | CTAG | 2 cut(s) | 396, 429 |