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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 725, 890, 971 |
| AccIII | TCCGGA | 1 cut(s) | 625 |
| AciI | CCGC | 4 cut(s) | 235, 658, 867, 894 |
| AclWI | GGATC | 2 cut(s) | 527, 597 |
| AcoI | YGGCCR | 3 cut(s) | 91, 142, 712 |
| AcsI | RAATTY | 3 cut(s) | 60, 404, 1039 |
| AcyI | GRCGYC | 4 cut(s) | 726, 942, 954, 972 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 89, 916, 920 |
| AgsI | TTSAA | 3 cut(s) | 563, 763, 1008 |
| AjiI | CACGTC | 1 cut(s) | 8 |
| AjnI | CCWGG | 2 cut(s) | 261, 285 |
| AluBI | AGCT | 4 cut(s) | 311, 317, 538, 848 |
| AluI | AGCT | 4 cut(s) | 311, 317, 538, 848 |
| Alw21I | GWGCWC | 1 cut(s) | 850 |
| Alw26I | GTCTC | 1 cut(s) | 472 |
| AlwI | GGATC | 2 cut(s) | 527, 597 |
| Ama87I | CYCGRG | 1 cut(s) | 275 |
| Aor13HI | TCCGGA | 1 cut(s) | 625 |
| AoxI | GGCC | 5 cut(s) | 91, 117, 142, 712, 1029 |
| ApeKI | GCWGC | 1 cut(s) | 335 |
| ApoI | RAATTY | 3 cut(s) | 60, 404, 1039 |
| AspA2I | CCTAGG | 1 cut(s) | 914 |
| AspLEI | GCGC | 3 cut(s) | 728, 769, 974 |
| AspS9I | GGNCC | 1 cut(s) | 1030 |
| AsuC2I | CCSGG | 1 cut(s) | 41 |
| AsuHPI | GGTGA | 4 cut(s) | 856, 977, 985, 992 |
| AvaI | CYCGRG | 1 cut(s) | 275 |
| AvrII | CCTAGG | 1 cut(s) | 914 |
| AxyI | CCTNAGG | 1 cut(s) | 976 |
| BaeGI | GKGCMC | 1 cut(s) | 835 |
| BalI | TGGCCA | 1 cut(s) | 714 |
| BanI | GGYRCC | 3 cut(s) | 725, 890, 971 |
| BanII | GRGCYC | 1 cut(s) | 850 |
| BauI | CACGAG | 1 cut(s) | 849 |
| Bbv12I | GWGCWC | 1 cut(s) | 850 |
| BbvI | GCAGC | 1 cut(s) | 347 |
| BccI | CCATC | 7 cut(s) | 248, 371, 472, 753, 944, 962, 966 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 491, 525 |
| BciT130I | CCWGG | 2 cut(s) | 263, 287 |
| BclI | TGATCA | 1 cut(s) | 823 |
| BcnI | CCSGG | 1 cut(s) | 41 |
| BcoDI | GTCTC | 1 cut(s) | 472 |
| BfaI | CTAG | 1 cut(s) | 915 |
| BfoI | RGCGCY | 3 cut(s) | 729, 770, 975 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 344 |
| BisI | GCNGC | 1 cut(s) | 336 |
| BlnI | CCTAGG | 1 cut(s) | 914 |
| BlsI | GCNGC | 1 cut(s) | 337 |
| Bme1390I | CCNGG | 3 cut(s) | 41, 263, 287 |
| BmeT110I | CYCGRG | 1 cut(s) | 275 |
| BmgBI | CACGTC | 1 cut(s) | 8 |
| BmgT120I | GGNCC | 1 cut(s) | 1030 |
| BmiI | GGNNCC | 4 cut(s) | 668, 727, 892, 973 |
| BmrFI | CCNGG | 3 cut(s) | 41, 263, 287 |
| BmsI | GCATC | 2 cut(s) | 250, 418 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1026 |
| BpuEI | CTTGAG | 2 cut(s) | 230, 297 |
| BpuMI | CCSGG | 1 cut(s) | 41 |
| Bsa29I | ATCGAT | 1 cut(s) | 501 |
| BsaHI | GRCGYC | 4 cut(s) | 726, 942, 954, 972 |
| BsaJI | CCNNGG | 3 cut(s) | 606, 914, 945 |
| BsaWI | WCCGGW | 1 cut(s) | 625 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 89, 916, 920 |
| Bse1I | ACTGG | 1 cut(s) | 205 |
| Bse21I | CCTNAGG | 1 cut(s) | 976 |
| Bse3DI | GCAATG | 1 cut(s) | 709 |
| BseAI | TCCGGA | 1 cut(s) | 625 |
| BseBI | CCWGG | 2 cut(s) | 263, 287 |
| BseCI | ATCGAT | 1 cut(s) | 501 |
| BseDI | CCNNGG | 3 cut(s) | 606, 914, 945 |
| BseGI | GGATG | 5 cut(s) | 162, 295, 366, 576, 955 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 89, 916, 920 |
| BseMI | GCAATG | 1 cut(s) | 709 |
| BseMII | CTCAG | 2 cut(s) | 990, 1040 |
| BseNI | ACTGG | 1 cut(s) | 205 |
| BseSI | GKGCMC | 1 cut(s) | 835 |
| BseXI | GCAGC | 1 cut(s) | 347 |
| BshFI | GGCC | 5 cut(s) | 93, 119, 144, 714, 1031 |
| BshNI | GGYRCC | 3 cut(s) | 725, 890, 971 |
| BshVI | ATCGAT | 1 cut(s) | 501 |
| BsiHKAI | GWGCWC | 1 cut(s) | 850 |
| BsiHKCI | CYCGRG | 1 cut(s) | 275 |
| BsiSI | CCGG | 4 cut(s) | 41, 102, 141, 626 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 89, 916, 920 |
| BsmAI | GTCTC | 1 cut(s) | 472 |
| BsmBI | CGTCTC | 1 cut(s) | 472 |
| BsnI | GGCC | 5 cut(s) | 93, 119, 144, 714, 1031 |
| BsoBI | CYCGRG | 1 cut(s) | 275 |
| Bsp1286I | GDGCHC | 2 cut(s) | 835, 850 |
| Bsp13I | TCCGGA | 1 cut(s) | 625 |
| Bsp143I | GATC | 4 cut(s) | 420, 519, 602, 823 |
| Bsp19I | CCATGG | 1 cut(s) | 945 |
| BspACI | CCGC | 4 cut(s) | 235, 658, 867, 894 |
| BspANI | GGCC | 5 cut(s) | 93, 119, 144, 714, 1031 |
| BspCNI | CTCAG | 2 cut(s) | 989, 1039 |
| BspDI | ATCGAT | 1 cut(s) | 501 |
| BspEI | TCCGGA | 1 cut(s) | 625 |
| BspHI | TCATGA | 1 cut(s) | 532 |
| BspLI | GGNNCC | 4 cut(s) | 668, 727, 892, 973 |
| BspPI | GGATC | 2 cut(s) | 527, 597 |
| BspT107I | GGYRCC | 3 cut(s) | 725, 890, 971 |
| BsrDI | GCAATG | 1 cut(s) | 709 |
| BsrI | ACTGG | 1 cut(s) | 205 |
| BssECI | CCNNGG | 3 cut(s) | 606, 914, 945 |
| BssMI | GATC | 4 cut(s) | 420, 519, 602, 823 |
| BssNI | GRCGYC | 4 cut(s) | 726, 942, 954, 972 |
| BssSI | CACGAG | 1 cut(s) | 849 |
| BssT1I | CCWWGG | 2 cut(s) | 914, 945 |
| Bst2BI | CACGAG | 1 cut(s) | 849 |
| Bst2UI | CCWGG | 2 cut(s) | 263, 287 |
| Bst4CI | ACNGT | 2 cut(s) | 25, 32 |
| Bst6I | CTCTTC | 1 cut(s) | 667 |
| BstACI | GRCGYC | 4 cut(s) | 726, 942, 954, 972 |
| BstC8I | GCNNGC | 2 cut(s) | 239, 309 |
| BstDEI | CTNAG | 5 cut(s) | 486, 738, 976, 1026, 1092 |
| BstDSI | CCRYGG | 2 cut(s) | 606, 945 |
| BstF5I | GGATG | 5 cut(s) | 162, 295, 366, 576, 955 |
| BstH2I | RGCGCY | 3 cut(s) | 729, 770, 975 |
| BstHHI | GCGC | 3 cut(s) | 728, 769, 974 |
| BstKTI | GATC | 4 cut(s) | 423, 522, 605, 826 |
| BstMAI | GTCTC | 1 cut(s) | 472 |
| BstMBI | GATC | 4 cut(s) | 420, 519, 602, 823 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 10, 323, 332, 344, 353, 875, 1060 |
| BstNI | CCWGG | 2 cut(s) | 263, 287 |
| BstSCI | CCNGG | 3 cut(s) | 39, 261, 285 |
| BstSLI | GKGCMC | 1 cut(s) | 835 |
| BstV1I | GCAGC | 1 cut(s) | 347 |
| BstX2I | RGATCY | 1 cut(s) | 602 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 722 |
| BstYI | RGATCY | 1 cut(s) | 602 |
| Bsu15I | ATCGAT | 1 cut(s) | 501 |
| Bsu36I | CCTNAGG | 1 cut(s) | 976 |
| BsuRI | GGCC | 5 cut(s) | 93, 119, 144, 714, 1031 |
| BsuTUI | ATCGAT | 1 cut(s) | 501 |
| BtgI | CCRYGG | 2 cut(s) | 606, 945 |
| BtgZI | GCGATG | 1 cut(s) | 446 |
| BtrI | CACGTC | 1 cut(s) | 8 |
| BtsCI | GGATG | 5 cut(s) | 162, 295, 366, 576, 955 |
| Cac8I | GCNNGC | 2 cut(s) | 239, 309 |
| CciI | TCATGA | 1 cut(s) | 532 |
| CfoI | GCGC | 3 cut(s) | 728, 769, 974 |
| Cfr13I | GGNCC | 1 cut(s) | 1030 |
| ClaI | ATCGAT | 1 cut(s) | 501 |
| CseI | GACGC | 3 cut(s) | 943, 950, 1031 |
| CviAII | CATG | 6 cut(s) | 533, 569, 716, 938, 946, 962 |
| DdeI | CTNAG | 5 cut(s) | 486, 738, 976, 1026, 1092 |
| DinI | GGCGCC | 2 cut(s) | 727, 973 |
| DpnI | GATC | 4 cut(s) | 422, 521, 604, 825 |
| DpnII | GATC | 4 cut(s) | 420, 519, 602, 823 |
| EaeI | YGGCCR | 3 cut(s) | 91, 142, 712 |
| Eam1104I | CTCTTC | 1 cut(s) | 667 |
| EarI | CTCTTC | 1 cut(s) | 667 |
| EciI | GGCGGA | 2 cut(s) | 224, 673 |
| Ecl136II | GAGCTC | 1 cut(s) | 848 |
| Eco130I | CCWWGG | 2 cut(s) | 914, 945 |
| Eco24I | GRGCYC | 1 cut(s) | 850 |
| Eco32I | GATATC | 2 cut(s) | 212, 232 |
| Eco53kI | GAGCTC | 1 cut(s) | 848 |
| Eco81I | CCTNAGG | 1 cut(s) | 976 |
| Eco88I | CYCGRG | 1 cut(s) | 275 |
| EcoICRI | GAGCTC | 1 cut(s) | 848 |
| EcoRI | GAATTC | 1 cut(s) | 404 |
| EcoRII | CCWGG | 2 cut(s) | 261, 285 |
| EcoRV | GATATC | 2 cut(s) | 212, 232 |
| EcoT14I | CCWWGG | 2 cut(s) | 914, 945 |
| EcoT38I | GRGCYC | 1 cut(s) | 850 |
| EgeI | GGCGCC | 2 cut(s) | 727, 973 |
| EheI | GGCGCC | 2 cut(s) | 727, 973 |
| ErhI | CCWWGG | 2 cut(s) | 914, 945 |
| Esp3I | CGTCTC | 1 cut(s) | 472 |
| FaeI | CATG | 6 cut(s) | 536, 572, 719, 941, 949, 965 |
| FatI | CATG | 6 cut(s) | 532, 568, 715, 937, 945, 961 |
| FbaI | TGATCA | 1 cut(s) | 823 |
| Fnu4HI | GCNGC | 1 cut(s) | 336 |
| FokI | GGATG | 5 cut(s) | 169, 302, 353, 563, 962 |
| FriOI | GRGCYC | 1 cut(s) | 850 |
| Fsp4HI | GCNGC | 1 cut(s) | 336 |
| FspBI | CTAG | 1 cut(s) | 915 |
| GlaI | GCGC | 3 cut(s) | 727, 768, 973 |
| GluI | GCNGC | 1 cut(s) | 336 |
| HaeII | RGCGCY | 3 cut(s) | 729, 770, 975 |
| HaeIII | GGCC | 5 cut(s) | 93, 119, 144, 714, 1031 |
| HapII | CCGG | 4 cut(s) | 41, 102, 141, 626 |
| HgaI | GACGC | 3 cut(s) | 943, 950, 1031 |
| HhaI | GCGC | 3 cut(s) | 728, 769, 974 |
| Hin1I | GRCGYC | 4 cut(s) | 726, 942, 954, 972 |
| Hin1II | CATG | 6 cut(s) | 536, 572, 719, 941, 949, 965 |
| Hin6I | GCGC | 3 cut(s) | 726, 767, 972 |
| HinP1I | GCGC | 3 cut(s) | 726, 767, 972 |
| HincII | GTYRAC | 5 cut(s) | 21, 28, 35, 46, 680 |
| HindII | GTYRAC | 5 cut(s) | 21, 28, 35, 46, 680 |
| HindIII | AAGCTT | 1 cut(s) | 315 |
| HinfI | GANTC | 6 cut(s) | 258, 271, 376, 498, 629, 755 |
| HpaII | CCGG | 4 cut(s) | 41, 102, 141, 626 |
| HphI | GGTGA | 4 cut(s) | 856, 977, 985, 992 |
| Hpy166II | GTNNAC | 6 cut(s) | 21, 28, 35, 46, 680, 904 |
| Hpy188I | TCNGA | 4 cut(s) | 80, 750, 823, 1021 |
| Hpy188III | TCNNGA | 6 cut(s) | 227, 275, 533, 626, 807, 851 |
| Hpy8I | GTNNAC | 6 cut(s) | 21, 28, 35, 46, 680, 904 |
| HpyAV | CCTTC | 1 cut(s) | 881 |
| HpyCH4III | ACNGT | 2 cut(s) | 25, 32 |
| HpyCH4IV | ACGT | 2 cut(s) | 7, 682 |
| HpyCH4V | TGCA | 3 cut(s) | 241, 473, 512 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 10, 323, 332, 344, 353, 875, 1060 |
| HpyF3I | CTNAG | 5 cut(s) | 486, 738, 976, 1026, 1092 |
| HpySE526I | ACGT | 2 cut(s) | 7, 682 |
| Hsp92I | GRCGYC | 4 cut(s) | 726, 942, 954, 972 |
| Hsp92II | CATG | 6 cut(s) | 536, 572, 719, 941, 949, 965 |
| HspAI | GCGC | 3 cut(s) | 726, 767, 972 |
| KasI | GGCGCC | 2 cut(s) | 725, 971 |
| Kpn2I | TCCGGA | 1 cut(s) | 625 |
| Ksp22I | TGATCA | 1 cut(s) | 823 |
| Kzo9I | GATC | 4 cut(s) | 420, 519, 602, 823 |
| LmnI | GCTCC | 1 cut(s) | 332 |
| Lsp1109I | GCAGC | 1 cut(s) | 347 |
| LweI | GCATC | 2 cut(s) | 250, 418 |
| MaeI | CTAG | 1 cut(s) | 915 |
| MaeII | ACGT | 2 cut(s) | 7, 682 |
| MaeIII | GTNAC | 4 cut(s) | 161, 505, 641, 862 |
| MalI | GATC | 4 cut(s) | 422, 521, 604, 825 |
| MboI | GATC | 4 cut(s) | 420, 519, 602, 823 |
| MboII | GAAGA | 3 cut(s) | 598, 684, 866 |
| MflI | RGATCY | 1 cut(s) | 602 |
| MhlI | GDGCHC | 2 cut(s) | 835, 850 |
| MlsI | TGGCCA | 1 cut(s) | 714 |
| MluCI | AATT | 7 cut(s) | 60, 173, 297, 404, 595, 634, 1039 |
| MluNI | TGGCCA | 1 cut(s) | 714 |
| Mly113I | GGCGCC | 2 cut(s) | 726, 972 |
| MlyI | GAGTC | 2 cut(s) | 370, 749 |
| MmeI | TCCRAC | 1 cut(s) | 103 |
| MnlI | CCTC | 8 cut(s) | 668, 688, 692, 718, 780, 907, 985, 1074 |
| Mox20I | TGGCCA | 1 cut(s) | 714 |
| MroI | TCCGGA | 1 cut(s) | 625 |
| MscI | TGGCCA | 1 cut(s) | 714 |
| MseI | TTAA | 3 cut(s) | 152, 341, 390 |
| MslI | CAYNNNNRTG | 6 cut(s) | 371, 581, 720, 750, 963, 966 |
| Msp20I | TGGCCA | 1 cut(s) | 714 |
| MspI | CCGG | 4 cut(s) | 41, 102, 141, 626 |
| MspR9I | CCNGG | 3 cut(s) | 41, 263, 287 |
| MvaI | CCWGG | 2 cut(s) | 263, 287 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 10, 323, 332, 344, 353, 875, 1060 |
| NarI | GGCGCC | 2 cut(s) | 726, 972 |
| NciI | CCSGG | 1 cut(s) | 41 |
| NcoI | CCATGG | 1 cut(s) | 945 |
| NdeII | GATC | 4 cut(s) | 420, 519, 602, 823 |
| NlaIII | CATG | 6 cut(s) | 536, 572, 719, 941, 949, 965 |
| NlaIV | GGNNCC | 4 cut(s) | 668, 727, 892, 973 |
| NmuCI | GTSAC | 1 cut(s) | 862 |
| PaeR7I | CTCGAG | 1 cut(s) | 275 |
| PagI | TCATGA | 1 cut(s) | 532 |
| PfeI | GAWTC | 4 cut(s) | 258, 271, 498, 629 |
| PfoI | TCCNGGA | 1 cut(s) | 261 |
| PkrI | GCNGC | 1 cut(s) | 337 |
| PleI | GAGTC | 2 cut(s) | 370, 749 |
| PluTI | GGCGCC | 2 cut(s) | 729, 975 |
| PpsI | GAGTC | 2 cut(s) | 370, 749 |
| Psp124BI | GAGCTC | 1 cut(s) | 850 |
| Psp6I | CCWGG | 2 cut(s) | 261, 285 |
| PspGI | CCWGG | 2 cut(s) | 261, 285 |
| PspN4I | GGNNCC | 4 cut(s) | 668, 727, 892, 973 |
| PspPI | GGNCC | 1 cut(s) | 1030 |
| PsuI | RGATCY | 1 cut(s) | 602 |
| RseI | CAYNNNNRTG | 6 cut(s) | 371, 581, 720, 750, 963, 966 |
| SacI | GAGCTC | 1 cut(s) | 850 |
| SaqAI | TTAA | 3 cut(s) | 152, 341, 390 |
| SatI | GCNGC | 1 cut(s) | 336 |
| Sau3AI | GATC | 4 cut(s) | 420, 519, 602, 823 |
| Sau96I | GGNCC | 1 cut(s) | 1030 |
| SchI | GAGTC | 2 cut(s) | 370, 749 |
| ScrFI | CCNGG | 3 cut(s) | 41, 263, 287 |
| SduI | GDGCHC | 2 cut(s) | 835, 850 |
| SfaNI | GCATC | 2 cut(s) | 250, 418 |
| SfoI | GGCGCC | 2 cut(s) | 727, 973 |
| Sfr274I | CTCGAG | 1 cut(s) | 275 |
| SlaI | CTCGAG | 1 cut(s) | 275 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 371, 581, 720, 750, 963, 966 |
| SmlI | CTYRAG | 3 cut(s) | 245, 275, 312 |
| SmoI | CTYRAG | 3 cut(s) | 245, 275, 312 |
| Sse9I | AATT | 7 cut(s) | 60, 173, 297, 404, 595, 634, 1039 |
| SsiI | CCGC | 4 cut(s) | 235, 658, 867, 894 |
| SspDI | GGCGCC | 2 cut(s) | 725, 971 |
| SspMI | CTAG | 1 cut(s) | 915 |
| SstI | GAGCTC | 1 cut(s) | 850 |
| StyD4I | CCNGG | 3 cut(s) | 39, 261, 285 |
| StyI | CCWWGG | 2 cut(s) | 914, 945 |
| TaaI | ACNGT | 2 cut(s) | 25, 32 |
| TaiI | ACGT | 2 cut(s) | 10, 685 |
| TaqI | TCGA | 4 cut(s) | 276, 496, 501, 808 |
| TaqII | GACCGA | 1 cut(s) | 118 |
| TasI | AATT | 7 cut(s) | 60, 173, 297, 404, 595, 634, 1039 |
| TfiI | GAWTC | 4 cut(s) | 258, 271, 498, 629 |
| Tru1I | TTAA | 3 cut(s) | 152, 341, 390 |
| Tru9I | TTAA | 3 cut(s) | 152, 341, 390 |
| TseFI | GTSAC | 1 cut(s) | 862 |
| TseI | GCWGC | 1 cut(s) | 335 |
| Tsp45I | GTSAC | 1 cut(s) | 862 |
| TspDTI | ATGAA | 3 cut(s) | 177, 521, 566 |
| TspGWI | ACGGA | 4 cut(s) | 532, 595, 679, 889 |
| XapI | RAATTY | 3 cut(s) | 60, 404, 1039 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 917, 965 |
| XhoI | CTCGAG | 1 cut(s) | 275 |
| XmaJI | CCTAGG | 1 cut(s) | 914 |
| XspI | CTAG | 1 cut(s) | 915 |