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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 885 |
| AccB1I | GGYRCC | 1 cut(s) | 997 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 307 |
| AciI | CCGC | 4 cut(s) | 351, 392, 995, 1139 |
| AclI | AACGTT | 1 cut(s) | 801 |
| AclWI | GGATC | 1 cut(s) | 318 |
| AcoI | YGGCCR | 2 cut(s) | 319, 984 |
| AcyI | GRCGYC | 1 cut(s) | 998 |
| AdeI | CACNNNGTG | 1 cut(s) | 1179 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 156, 307, 486 |
| AflII | CTTAAG | 1 cut(s) | 167 |
| AflIII | ACRYGT | 1 cut(s) | 631 |
| AgsI | TTSAA | 3 cut(s) | 362, 865, 1035 |
| AjnI | CCWGG | 2 cut(s) | 485, 618 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 32 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 440, 472 |
| AluBI | AGCT | 7 cut(s) | 166, 198, 644, 650, 769, 1120, 1171 |
| AluI | AGCT | 7 cut(s) | 166, 198, 644, 650, 769, 1120, 1171 |
| Alw21I | GWGCWC | 1 cut(s) | 1122 |
| Alw26I | GTCTC | 2 cut(s) | 781, 851 |
| AlwI | GGATC | 1 cut(s) | 318 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 108, 409 |
| Ama87I | CYCGRG | 1 cut(s) | 608 |
| AoxI | GGCC | 5 cut(s) | 175, 182, 319, 984, 1014 |
| ApeKI | GCWGC | 2 cut(s) | 99, 668 |
| AspLEI | GCGC | 2 cut(s) | 1000, 1041 |
| AspS9I | GGNCC | 3 cut(s) | 182, 477, 887 |
| AsuHPI | GGTGA | 2 cut(s) | 700, 1128 |
| AsuNHI | GCTAGC | 1 cut(s) | 145 |
| AvaI | CYCGRG | 1 cut(s) | 608 |
| AvaII | GGWCC | 2 cut(s) | 477, 887 |
| BalI | TGGCCA | 2 cut(s) | 321, 986 |
| BanI | GGYRCC | 1 cut(s) | 997 |
| BanII | GRGCYC | 2 cut(s) | 243, 1122 |
| BauI | CACGAG | 1 cut(s) | 1121 |
| BbsI | GAAGAC | 1 cut(s) | 762 |
| Bbv12I | GWGCWC | 1 cut(s) | 1122 |
| BbvI | GCAGC | 2 cut(s) | 86, 680 |
| BccI | CCATC | 5 cut(s) | 430, 581, 704, 831, 1025 |
| BceAI | ACGGC | 1 cut(s) | 1026 |
| BciT130I | CCWGG | 2 cut(s) | 487, 620 |
| BciVI | GTATCC | 1 cut(s) | 592 |
| BcoDI | GTCTC | 2 cut(s) | 781, 851 |
| BfaI | CTAG | 6 cut(s) | 24, 44, 75, 146, 383, 1207 |
| BfmI | CTRYAG | 1 cut(s) | 100 |
| BfoI | RGCGCY | 2 cut(s) | 1001, 1042 |
| BfrI | CTTAAG | 1 cut(s) | 167 |
| BfuI | GTATCC | 1 cut(s) | 592 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 677, 992 |
| BisI | GCNGC | 4 cut(s) | 100, 393, 669, 996 |
| BlsI | GCNGC | 4 cut(s) | 101, 394, 670, 997 |
| Bme1390I | CCNGG | 2 cut(s) | 487, 620 |
| Bme18I | GGWCC | 2 cut(s) | 477, 887 |
| BmeT110I | CYCGRG | 1 cut(s) | 608 |
| BmgT120I | GGNCC | 3 cut(s) | 182, 477, 887 |
| BmiI | GGNNCC | 3 cut(s) | 478, 479, 999 |
| BmrFI | CCNGG | 2 cut(s) | 487, 620 |
| BmsI | GCATC | 1 cut(s) | 116 |
| BmtI | GCTAGC | 1 cut(s) | 149 |
| BpiI | GAAGAC | 1 cut(s) | 762 |
| BpmI | CTGGAG | 1 cut(s) | 716 |
| BpuEI | CTTGAG | 2 cut(s) | 214, 630 |
| BsaHI | GRCGYC | 1 cut(s) | 998 |
| BsaI | GGTCTC | 1 cut(s) | 781 |
| BsaJI | CCNNGG | 1 cut(s) | 178 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 440, 470 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 156, 307, 486 |
| Bse1I | ACTGG | 7 cut(s) | 393, 414, 513, 538, 600, 733, 831 |
| BseBI | CCWGG | 2 cut(s) | 487, 620 |
| BseDI | CCNNGG | 1 cut(s) | 178 |
| BseGI | GGATG | 6 cut(s) | 19, 131, 495, 699, 727, 1017 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 156, 307, 486 |
| BseMII | CTCAG | 1 cut(s) | 1049 |
| BseNI | ACTGG | 7 cut(s) | 393, 414, 513, 538, 600, 733, 831 |
| BseXI | GCAGC | 2 cut(s) | 86, 680 |
| BseYI | CCCAGC | 1 cut(s) | 429 |
| BshFI | GGCC | 5 cut(s) | 177, 184, 321, 986, 1016 |
| BshNI | GGYRCC | 1 cut(s) | 997 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1122 |
| BsiHKCI | CYCGRG | 1 cut(s) | 608 |
| BslFI | GGGAC | 1 cut(s) | 490 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 156, 307, 486 |
| BsmAI | GTCTC | 2 cut(s) | 781, 851 |
| BsmFI | GGGAC | 1 cut(s) | 490 |
| BsnI | GGCC | 5 cut(s) | 177, 184, 321, 986, 1016 |
| Bso31I | GGTCTC | 1 cut(s) | 781 |
| BsoBI | CYCGRG | 1 cut(s) | 608 |
| Bsp1286I | GDGCHC | 2 cut(s) | 243, 1122 |
| Bsp143I | GATC | 3 cut(s) | 310, 1191, 1203 |
| BspACI | CCGC | 4 cut(s) | 351, 392, 995, 1139 |
| BspANI | GGCC | 5 cut(s) | 177, 184, 321, 986, 1016 |
| BspCNI | CTCAG | 1 cut(s) | 1050 |
| BspLI | GGNNCC | 3 cut(s) | 478, 479, 999 |
| BspMAI | CTGCAG | 1 cut(s) | 104 |
| BspOI | GCTAGC | 1 cut(s) | 149 |
| BspPI | GGATC | 1 cut(s) | 318 |
| BspT107I | GGYRCC | 1 cut(s) | 997 |
| BspTI | CTTAAG | 1 cut(s) | 167 |
| BspTNI | GGTCTC | 1 cut(s) | 781 |
| BsrI | ACTGG | 7 cut(s) | 393, 414, 513, 538, 600, 733, 831 |
| BssECI | CCNNGG | 1 cut(s) | 178 |
| BssMI | GATC | 3 cut(s) | 310, 1191, 1203 |
| BssNI | GRCGYC | 1 cut(s) | 998 |
| BssSI | CACGAG | 1 cut(s) | 1121 |
| BssT1I | CCWWGG | 1 cut(s) | 178 |
| Bst2BI | CACGAG | 1 cut(s) | 1121 |
| Bst2UI | CCWGG | 2 cut(s) | 487, 620 |
| Bst4CI | ACNGT | 3 cut(s) | 110, 116, 1177 |
| Bst6I | CTCTTC | 1 cut(s) | 940 |
| BstACI | GRCGYC | 1 cut(s) | 998 |
| BstAFI | CTTAAG | 1 cut(s) | 167 |
| BstC8I | GCNNGC | 3 cut(s) | 97, 147, 642 |
| BstDEI | CTNAG | 2 cut(s) | 673, 1058 |
| BstF5I | GGATG | 6 cut(s) | 19, 131, 495, 699, 727, 1017 |
| BstH2I | RGCGCY | 2 cut(s) | 1001, 1042 |
| BstHHI | GCGC | 2 cut(s) | 1000, 1041 |
| BstKTI | GATC | 3 cut(s) | 313, 1194, 1206 |
| BstMAI | GTCTC | 2 cut(s) | 781, 851 |
| BstMBI | GATC | 3 cut(s) | 310, 1191, 1203 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 151, 656, 665, 677, 992, 1147, 1168 |
| BstNI | CCWGG | 2 cut(s) | 487, 620 |
| BstNSI | RCATGY | 2 cut(s) | 628, 635 |
| BstSCI | CCNGG | 2 cut(s) | 485, 618 |
| BstSFI | CTRYAG | 1 cut(s) | 100 |
| BstV1I | GCAGC | 2 cut(s) | 86, 680 |
| BstV2I | GAAGAC | 1 cut(s) | 762 |
| BstX2I | RGATCY | 1 cut(s) | 310 |
| BstYI | RGATCY | 1 cut(s) | 310 |
| BsuI | GTATCC | 1 cut(s) | 592 |
| BsuRI | GGCC | 5 cut(s) | 177, 184, 321, 986, 1016 |
| BtsCI | GGATG | 6 cut(s) | 19, 131, 495, 699, 727, 1017 |
| BtsI | GCAGTG | 2 cut(s) | 76, 109 |
| BtsIMutI | CAGTG | 3 cut(s) | 76, 109, 1173 |
| Cac8I | GCNNGC | 3 cut(s) | 97, 147, 642 |
| CaiI | CAGNNNCTG | 2 cut(s) | 108, 409 |
| CfoI | GCGC | 2 cut(s) | 1000, 1041 |
| Cfr13I | GGNCC | 3 cut(s) | 182, 477, 887 |
| CviAII | CATG | 5 cut(s) | 62, 269, 625, 632, 988 |
| DdeI | CTNAG | 2 cut(s) | 673, 1058 |
| DinI | GGCGCC | 1 cut(s) | 999 |
| DpnI | GATC | 3 cut(s) | 312, 1193, 1205 |
| DpnII | GATC | 3 cut(s) | 310, 1191, 1203 |
| DraIII | CACNNNGTG | 1 cut(s) | 1179 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 885 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 885 |
| EaeI | YGGCCR | 2 cut(s) | 319, 984 |
| Eam1104I | CTCTTC | 1 cut(s) | 940 |
| EarI | CTCTTC | 1 cut(s) | 940 |
| Ecl136II | GAGCTC | 1 cut(s) | 1120 |
| Eco130I | CCWWGG | 1 cut(s) | 178 |
| Eco24I | GRGCYC | 2 cut(s) | 243, 1122 |
| Eco31I | GGTCTC | 1 cut(s) | 781 |
| Eco32I | GATATC | 1 cut(s) | 545 |
| Eco47I | GGWCC | 2 cut(s) | 477, 887 |
| Eco53kI | GAGCTC | 1 cut(s) | 1120 |
| Eco88I | CYCGRG | 1 cut(s) | 608 |
| EcoICRI | GAGCTC | 1 cut(s) | 1120 |
| EcoO109I | RGGNCCY | 1 cut(s) | 477 |
| EcoRII | CCWGG | 2 cut(s) | 485, 618 |
| EcoRV | GATATC | 1 cut(s) | 545 |
| EcoT14I | CCWWGG | 1 cut(s) | 178 |
| EcoT38I | GRGCYC | 2 cut(s) | 243, 1122 |
| EgeI | GGCGCC | 1 cut(s) | 999 |
| EheI | GGCGCC | 1 cut(s) | 999 |
| ErhI | CCWWGG | 1 cut(s) | 178 |
| FaeI | CATG | 5 cut(s) | 65, 272, 628, 635, 991 |
| FaqI | GGGAC | 1 cut(s) | 490 |
| FatI | CATG | 5 cut(s) | 61, 268, 624, 631, 987 |
| FauNDI | CATATG | 1 cut(s) | 717 |
| Fnu4HI | GCNGC | 4 cut(s) | 100, 393, 669, 996 |
| FokI | GGATG | 6 cut(s) | 26, 138, 502, 686, 734, 1004 |
| FriOI | GRGCYC | 2 cut(s) | 243, 1122 |
| Fsp4HI | GCNGC | 4 cut(s) | 100, 393, 669, 996 |
| FspBI | CTAG | 6 cut(s) | 24, 44, 75, 146, 383, 1207 |
| GlaI | GCGC | 2 cut(s) | 999, 1040 |
| GluI | GCNGC | 4 cut(s) | 100, 393, 669, 996 |
| GsaI | CCCAGC | 1 cut(s) | 433 |
| GsuI | CTGGAG | 1 cut(s) | 716 |
| HaeII | RGCGCY | 2 cut(s) | 1001, 1042 |
| HaeIII | GGCC | 5 cut(s) | 177, 184, 321, 986, 1016 |
| HhaI | GCGC | 2 cut(s) | 1000, 1041 |
| Hin1I | GRCGYC | 1 cut(s) | 998 |
| Hin1II | CATG | 5 cut(s) | 65, 272, 628, 635, 991 |
| Hin6I | GCGC | 2 cut(s) | 998, 1039 |
| HinP1I | GCGC | 2 cut(s) | 998, 1039 |
| HincII | GTYRAC | 1 cut(s) | 953 |
| HindII | GTYRAC | 1 cut(s) | 953 |
| HindIII | AAGCTT | 1 cut(s) | 648 |
| HinfI | GANTC | 4 cut(s) | 379, 709, 809, 1054 |
| HphI | GGTGA | 2 cut(s) | 700, 1128 |
| Hpy166II | GTNNAC | 1 cut(s) | 953 |
| Hpy188I | TCNGA | 1 cut(s) | 1059 |
| Hpy8I | GTNNAC | 1 cut(s) | 953 |
| HpyAV | CCTTC | 3 cut(s) | 457, 492, 905 |
| HpyCH4III | ACNGT | 3 cut(s) | 110, 116, 1177 |
| HpyCH4IV | ACGT | 3 cut(s) | 801, 880, 955 |
| HpyCH4V | TGCA | 5 cut(s) | 61, 69, 82, 102, 129 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 151, 656, 665, 677, 992, 1147, 1168 |
| HpyF3I | CTNAG | 2 cut(s) | 673, 1058 |
| HpySE526I | ACGT | 3 cut(s) | 801, 880, 955 |
| Hsp92I | GRCGYC | 1 cut(s) | 998 |
| Hsp92II | CATG | 5 cut(s) | 65, 272, 628, 635, 991 |
| HspAI | GCGC | 2 cut(s) | 998, 1039 |
| KasI | GGCGCC | 1 cut(s) | 997 |
| KflI | GGGWCCC | 1 cut(s) | 477 |
| Kzo9I | GATC | 3 cut(s) | 310, 1191, 1203 |
| LmnI | GCTCC | 2 cut(s) | 523, 735 |
| Lsp1109I | GCAGC | 2 cut(s) | 86, 680 |
| LweI | GCATC | 1 cut(s) | 116 |
| MaeI | CTAG | 6 cut(s) | 24, 44, 75, 146, 383, 1207 |
| MaeII | ACGT | 3 cut(s) | 801, 880, 955 |
| MaeIII | GTNAC | 5 cut(s) | 104, 110, 494, 806, 1134 |
| MalI | GATC | 3 cut(s) | 312, 1193, 1205 |
| MboI | GATC | 3 cut(s) | 310, 1191, 1203 |
| MboII | GAAGA | 6 cut(s) | 305, 764, 767, 957, 1138, 1201 |
| MflI | RGATCY | 1 cut(s) | 310 |
| MhlI | GDGCHC | 2 cut(s) | 243, 1122 |
| MlsI | TGGCCA | 2 cut(s) | 321, 986 |
| MluCI | AATT | 4 cut(s) | 8, 603, 871, 1130 |
| MluNI | TGGCCA | 2 cut(s) | 321, 986 |
| Mly113I | GGCGCC | 1 cut(s) | 998 |
| MlyI | GAGTC | 3 cut(s) | 703, 803, 1063 |
| MmeI | TCCRAC | 1 cut(s) | 288 |
| Mox20I | TGGCCA | 2 cut(s) | 321, 986 |
| MscI | TGGCCA | 2 cut(s) | 321, 986 |
| MseI | TTAA | 1 cut(s) | 168 |
| MslI | CAYNNNNRTG | 4 cut(s) | 267, 720, 1022, 1067 |
| Msp20I | TGGCCA | 2 cut(s) | 321, 986 |
| MspCI | CTTAAG | 1 cut(s) | 167 |
| MspR9I | CCNGG | 2 cut(s) | 487, 620 |
| MvaI | CCWGG | 2 cut(s) | 487, 620 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 151, 656, 665, 677, 992, 1147, 1168 |
| NarI | GGCGCC | 1 cut(s) | 998 |
| NdeI | CATATG | 1 cut(s) | 717 |
| NdeII | GATC | 3 cut(s) | 310, 1191, 1203 |
| NheI | GCTAGC | 1 cut(s) | 145 |
| NlaIII | CATG | 5 cut(s) | 65, 272, 628, 635, 991 |
| NlaIV | GGNNCC | 3 cut(s) | 478, 479, 999 |
| NmuCI | GTSAC | 4 cut(s) | 104, 110, 806, 1134 |
| NspI | RCATGY | 2 cut(s) | 628, 635 |
| PaeR7I | CTCGAG | 1 cut(s) | 608 |
| PciI | ACATGT | 1 cut(s) | 631 |
| PfeI | GAWTC | 1 cut(s) | 379 |
| PflFI | GACNNNGTC | 2 cut(s) | 39, 116 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 307 |
| PfoI | TCCNGGA | 2 cut(s) | 485, 618 |
| PkrI | GCNGC | 4 cut(s) | 101, 394, 670, 997 |
| PleI | GAGTC | 3 cut(s) | 703, 803, 1062 |
| PluTI | GGCGCC | 1 cut(s) | 1001 |
| PpsI | GAGTC | 3 cut(s) | 703, 803, 1062 |
| PpuMI | RGGWCCY | 1 cut(s) | 477 |
| PscI | ACATGT | 1 cut(s) | 631 |
| Psp124BI | GAGCTC | 1 cut(s) | 1122 |
| Psp1406I | AACGTT | 1 cut(s) | 801 |
| Psp5II | RGGWCCY | 1 cut(s) | 477 |
| Psp6I | CCWGG | 2 cut(s) | 485, 618 |
| PspFI | CCCAGC | 1 cut(s) | 429 |
| PspGI | CCWGG | 2 cut(s) | 485, 618 |
| PspN4I | GGNNCC | 3 cut(s) | 478, 479, 999 |
| PspPI | GGNCC | 3 cut(s) | 182, 477, 887 |
| PspPPI | RGGWCCY | 1 cut(s) | 477 |
| PstI | CTGCAG | 1 cut(s) | 104 |
| PstNI | CAGNNNCTG | 2 cut(s) | 108, 409 |
| PsuI | RGATCY | 1 cut(s) | 310 |
| PsyI | GACNNNGTC | 2 cut(s) | 39, 116 |
| RseI | CAYNNNNRTG | 4 cut(s) | 267, 720, 1022, 1067 |
| SacI | GAGCTC | 1 cut(s) | 1122 |
| SaqAI | TTAA | 1 cut(s) | 168 |
| SatI | GCNGC | 4 cut(s) | 100, 393, 669, 996 |
| Sau3AI | GATC | 3 cut(s) | 310, 1191, 1203 |
| Sau96I | GGNCC | 3 cut(s) | 182, 477, 887 |
| SchI | GAGTC | 3 cut(s) | 703, 803, 1063 |
| ScrFI | CCNGG | 2 cut(s) | 487, 620 |
| SduI | GDGCHC | 2 cut(s) | 243, 1122 |
| SfaNI | GCATC | 1 cut(s) | 116 |
| SfcI | CTRYAG | 1 cut(s) | 100 |
| SfoI | GGCGCC | 1 cut(s) | 999 |
| Sfr274I | CTCGAG | 1 cut(s) | 608 |
| SinI | GGWCC | 2 cut(s) | 477, 887 |
| SlaI | CTCGAG | 1 cut(s) | 608 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 267, 720, 1022, 1067 |
| SmlI | CTYRAG | 4 cut(s) | 167, 193, 608, 645 |
| SmoI | CTYRAG | 4 cut(s) | 167, 193, 608, 645 |
| Sse9I | AATT | 4 cut(s) | 8, 603, 871, 1130 |
| SsiI | CCGC | 4 cut(s) | 351, 392, 995, 1139 |
| SspDI | GGCGCC | 1 cut(s) | 997 |
| SspMI | CTAG | 6 cut(s) | 24, 44, 75, 146, 383, 1207 |
| SstI | GAGCTC | 1 cut(s) | 1122 |
| StyD4I | CCNGG | 2 cut(s) | 485, 618 |
| StyI | CCWWGG | 1 cut(s) | 178 |
| TaaI | ACNGT | 3 cut(s) | 110, 116, 1177 |
| TaiI | ACGT | 3 cut(s) | 804, 883, 958 |
| TaqI | TCGA | 5 cut(s) | 332, 425, 446, 609, 1080 |
| TasI | AATT | 4 cut(s) | 8, 603, 871, 1130 |
| TauI | GCSGC | 2 cut(s) | 395, 998 |
| TfiI | GAWTC | 1 cut(s) | 379 |
| Tru1I | TTAA | 1 cut(s) | 168 |
| Tru9I | TTAA | 1 cut(s) | 168 |
| TscAI | CASTG | 3 cut(s) | 76, 109, 1180 |
| TseFI | GTSAC | 4 cut(s) | 104, 110, 806, 1134 |
| TseI | GCWGC | 2 cut(s) | 99, 668 |
| Tsp45I | GTSAC | 4 cut(s) | 104, 110, 806, 1134 |
| TspDTI | ATGAA | 2 cut(s) | 761, 765 |
| TspRI | CASTG | 3 cut(s) | 76, 109, 1180 |
| Tth111I | GACNNNGTC | 2 cut(s) | 39, 116 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 307 |
| Vha464I | CTTAAG | 1 cut(s) | 167 |
| VpaK11BI | GGWCC | 2 cut(s) | 477, 887 |
| XbaI | TCTAGA | 1 cut(s) | 382 |
| XceI | RCATGY | 2 cut(s) | 628, 635 |
| XhoI | CTCGAG | 1 cut(s) | 608 |
| XspI | CTAG | 6 cut(s) | 24, 44, 75, 146, 383, 1207 |