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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 177 |
| AccB1I | GGYRCC | 2 cut(s) | 353, 464 |
| AccII | CGCG | 1 cut(s) | 564 |
| AccIII | TCCGGA | 1 cut(s) | 544 |
| AciI | CCGC | 1 cut(s) | 145 |
| AclI | AACGTT | 1 cut(s) | 96 |
| AcoI | YGGCCR | 1 cut(s) | 220 |
| AcyI | GRCGYC | 2 cut(s) | 354, 465 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 46, 575 |
| AflIII | ACRYGT | 1 cut(s) | 21 |
| AgsI | TTSAA | 3 cut(s) | 160, 294, 405 |
| AluBI | AGCT | 5 cut(s) | 64, 188, 346, 457, 479 |
| AluI | AGCT | 5 cut(s) | 64, 188, 346, 457, 479 |
| Alw21I | GWGCWC | 2 cut(s) | 348, 459 |
| Alw26I | GTCTC | 3 cut(s) | 207, 280, 391 |
| Aor13HI | TCCGGA | 1 cut(s) | 544 |
| AoxI | GGCC | 1 cut(s) | 220 |
| ApeKI | GCWGC | 1 cut(s) | 82 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspLEI | GCGC | 3 cut(s) | 356, 467, 566 |
| BalI | TGGCCA | 1 cut(s) | 222 |
| BanI | GGYRCC | 2 cut(s) | 353, 464 |
| BanII | GRGCYC | 2 cut(s) | 348, 459 |
| BbsI | GAAGAC | 2 cut(s) | 57, 260 |
| Bbv12I | GWGCWC | 2 cut(s) | 348, 459 |
| BbvI | GCAGC | 1 cut(s) | 94 |
| BccI | CCATC | 2 cut(s) | 126, 202 |
| BcoDI | GTCTC | 3 cut(s) | 207, 280, 391 |
| BfaI | CTAG | 1 cut(s) | 519 |
| BfmI | CTRYAG | 1 cut(s) | 556 |
| BfoI | RGCGCY | 2 cut(s) | 357, 468 |
| BisI | GCNGC | 1 cut(s) | 83 |
| BlsI | GCNGC | 1 cut(s) | 84 |
| BmiI | GGNNCC | 2 cut(s) | 355, 466 |
| BpiI | GAAGAC | 2 cut(s) | 57, 260 |
| BpuEI | CTTGAG | 1 cut(s) | 98 |
| BsaBI | GATNNNNATC | 3 cut(s) | 245, 315, 426 |
| BsaHI | GRCGYC | 2 cut(s) | 354, 465 |
| BsaJI | CCNNGG | 1 cut(s) | 525 |
| BsaWI | WCCGGW | 1 cut(s) | 544 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 46, 575 |
| Bse8I | GATNNNNATC | 3 cut(s) | 245, 315, 426 |
| BseAI | TCCGGA | 1 cut(s) | 544 |
| BseDI | CCNNGG | 1 cut(s) | 525 |
| BseJI | GATNNNNATC | 3 cut(s) | 245, 315, 426 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 46, 575 |
| BseXI | GCAGC | 1 cut(s) | 94 |
| BsgI | GTGCAG | 2 cut(s) | 264, 375 |
| Bsh1236I | CGCG | 1 cut(s) | 564 |
| BshFI | GGCC | 1 cut(s) | 222 |
| BshNI | GGYRCC | 2 cut(s) | 353, 464 |
| BsiHKAI | GWGCWC | 2 cut(s) | 348, 459 |
| BsiSI | CCGG | 1 cut(s) | 545 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 46, 575 |
| BsmAI | GTCTC | 3 cut(s) | 207, 280, 391 |
| BsmBI | CGTCTC | 2 cut(s) | 280, 391 |
| BsnI | GGCC | 1 cut(s) | 222 |
| Bsp1286I | GDGCHC | 2 cut(s) | 348, 459 |
| Bsp13I | TCCGGA | 1 cut(s) | 544 |
| Bsp143I | GATC | 1 cut(s) | 246 |
| BspACI | CCGC | 1 cut(s) | 145 |
| BspANI | GGCC | 1 cut(s) | 222 |
| BspEI | TCCGGA | 1 cut(s) | 544 |
| BspFNI | CGCG | 1 cut(s) | 564 |
| BspHI | TCATGA | 2 cut(s) | 340, 451 |
| BspLI | GGNNCC | 2 cut(s) | 355, 466 |
| BspQI | GCTCTTC | 1 cut(s) | 195 |
| BspT107I | GGYRCC | 2 cut(s) | 353, 464 |
| BssECI | CCNNGG | 1 cut(s) | 525 |
| BssMI | GATC | 1 cut(s) | 246 |
| BssNI | GRCGYC | 2 cut(s) | 354, 465 |
| BssT1I | CCWWGG | 1 cut(s) | 525 |
| Bst6I | CTCTTC | 1 cut(s) | 195 |
| BstACI | GRCGYC | 2 cut(s) | 354, 465 |
| BstDEI | CTNAG | 1 cut(s) | 534 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 44 |
| BstFNI | CGCG | 1 cut(s) | 564 |
| BstH2I | RGCGCY | 2 cut(s) | 357, 468 |
| BstHHI | GCGC | 3 cut(s) | 356, 467, 566 |
| BstKTI | GATC | 1 cut(s) | 249 |
| BstMAI | GTCTC | 3 cut(s) | 207, 280, 391 |
| BstMBI | GATC | 1 cut(s) | 246 |
| BstSFI | CTRYAG | 1 cut(s) | 556 |
| BstUI | CGCG | 1 cut(s) | 564 |
| BstV1I | GCAGC | 1 cut(s) | 94 |
| BstV2I | GAAGAC | 2 cut(s) | 57, 260 |
| BsuRI | GGCC | 1 cut(s) | 222 |
| BtgZI | GCGATG | 1 cut(s) | 145 |
| BtsIMutI | CAGTG | 2 cut(s) | 281, 392 |
| CciI | TCATGA | 2 cut(s) | 340, 451 |
| CfoI | GCGC | 3 cut(s) | 356, 467, 566 |
| CviAII | CATG | 6 cut(s) | 13, 341, 358, 452, 469, 488 |
| CviJI | RGCY | 9 cut(s) | 64, 141, 188, 222, 227, 346, 457, 479, 538 |
| CviKI_1 | RGCY | 9 cut(s) | 64, 141, 188, 222, 227, 346, 457, 479, 538 |
| DdeI | CTNAG | 1 cut(s) | 534 |
| DinI | GGCGCC | 2 cut(s) | 355, 466 |
| DpnI | GATC | 1 cut(s) | 248 |
| DpnII | GATC | 1 cut(s) | 246 |
| EaeI | YGGCCR | 1 cut(s) | 220 |
| Eam1104I | CTCTTC | 1 cut(s) | 195 |
| EarI | CTCTTC | 1 cut(s) | 195 |
| Ecl136II | GAGCTC | 2 cut(s) | 346, 457 |
| Eco130I | CCWWGG | 1 cut(s) | 525 |
| Eco24I | GRGCYC | 2 cut(s) | 348, 459 |
| Eco53kI | GAGCTC | 2 cut(s) | 346, 457 |
| EcoICRI | GAGCTC | 2 cut(s) | 346, 457 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 44 |
| EcoT14I | CCWWGG | 1 cut(s) | 525 |
| EcoT38I | GRGCYC | 2 cut(s) | 348, 459 |
| EgeI | GGCGCC | 2 cut(s) | 355, 466 |
| EheI | GGCGCC | 2 cut(s) | 355, 466 |
| ErhI | CCWWGG | 1 cut(s) | 525 |
| Esp3I | CGTCTC | 2 cut(s) | 280, 391 |
| FaeI | CATG | 6 cut(s) | 16, 344, 361, 455, 472, 491 |
| FatI | CATG | 6 cut(s) | 12, 340, 357, 451, 468, 487 |
| Fnu4HI | GCNGC | 1 cut(s) | 83 |
| FriOI | GRGCYC | 2 cut(s) | 348, 459 |
| Fsp4HI | GCNGC | 1 cut(s) | 83 |
| FspBI | CTAG | 1 cut(s) | 519 |
| GlaI | GCGC | 3 cut(s) | 355, 466, 565 |
| GluI | GCNGC | 1 cut(s) | 83 |
| HaeII | RGCGCY | 2 cut(s) | 357, 468 |
| HaeIII | GGCC | 1 cut(s) | 222 |
| HapII | CCGG | 1 cut(s) | 545 |
| HhaI | GCGC | 3 cut(s) | 356, 467, 566 |
| Hin1I | GRCGYC | 2 cut(s) | 354, 465 |
| Hin1II | CATG | 6 cut(s) | 16, 344, 361, 455, 472, 491 |
| Hin6I | GCGC | 3 cut(s) | 354, 465, 564 |
| HinP1I | GCGC | 3 cut(s) | 354, 465, 564 |
| HinfI | GANTC | 4 cut(s) | 104, 256, 367, 548 |
| HpaII | CCGG | 1 cut(s) | 545 |
| Hpy188I | TCNGA | 4 cut(s) | 184, 207, 306, 417 |
| Hpy188III | TCNNGA | 8 cut(s) | 101, 116, 250, 320, 341, 431, 452, 545 |
| HpyAV | CCTTC | 2 cut(s) | 277, 388 |
| HpyCH4IV | ACGT | 5 cut(s) | 23, 96, 325, 436, 474 |
| HpyCH4V | TGCA | 2 cut(s) | 281, 392 |
| HpyF3I | CTNAG | 1 cut(s) | 534 |
| HpySE526I | ACGT | 5 cut(s) | 23, 96, 325, 436, 474 |
| Hsp92I | GRCGYC | 2 cut(s) | 354, 465 |
| Hsp92II | CATG | 6 cut(s) | 16, 344, 361, 455, 472, 491 |
| HspAI | GCGC | 3 cut(s) | 354, 465, 564 |
| KasI | GGCGCC | 2 cut(s) | 353, 464 |
| Kpn2I | TCCGGA | 1 cut(s) | 544 |
| Kzo9I | GATC | 1 cut(s) | 246 |
| LguI | GCTCTTC | 1 cut(s) | 195 |
| LpnPI | CCDG | 5 cut(s) | 122, 129, 333, 444, 558 |
| Lsp1109I | GCAGC | 1 cut(s) | 94 |
| MaeI | CTAG | 1 cut(s) | 519 |
| MaeII | ACGT | 5 cut(s) | 23, 96, 325, 436, 474 |
| MaeIII | GTNAC | 1 cut(s) | 101 |
| MalI | GATC | 1 cut(s) | 248 |
| MboI | GATC | 1 cut(s) | 246 |
| MboII | GAAGA | 4 cut(s) | 62, 182, 265, 517 |
| MhlI | GDGCHC | 2 cut(s) | 348, 459 |
| MlsI | TGGCCA | 1 cut(s) | 222 |
| MluCI | AATT | 2 cut(s) | 298, 409 |
| MluNI | TGGCCA | 1 cut(s) | 222 |
| Mly113I | GGCGCC | 2 cut(s) | 354, 465 |
| MlyI | GAGTC | 4 cut(s) | 98, 250, 361, 557 |
| MnlI | CCTC | 4 cut(s) | 40, 50, 152, 569 |
| Mox20I | TGGCCA | 1 cut(s) | 222 |
| MroI | TCCGGA | 1 cut(s) | 544 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MscI | TGGCCA | 1 cut(s) | 222 |
| MslI | CAYNNNNRTG | 1 cut(s) | 15 |
| Msp20I | TGGCCA | 1 cut(s) | 222 |
| MspI | CCGG | 1 cut(s) | 545 |
| MvnI | CGCG | 1 cut(s) | 564 |
| NarI | GGCGCC | 2 cut(s) | 354, 465 |
| NdeII | GATC | 1 cut(s) | 246 |
| NlaIII | CATG | 6 cut(s) | 16, 344, 361, 455, 472, 491 |
| NlaIV | GGNNCC | 2 cut(s) | 355, 466 |
| NmuCI | GTSAC | 1 cut(s) | 101 |
| PagI | TCATGA | 2 cut(s) | 340, 451 |
| PciSI | GCTCTTC | 1 cut(s) | 195 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PkrI | GCNGC | 1 cut(s) | 84 |
| PleI | GAGTC | 4 cut(s) | 98, 250, 361, 556 |
| PluTI | GGCGCC | 2 cut(s) | 357, 468 |
| PpsI | GAGTC | 4 cut(s) | 98, 250, 361, 556 |
| PsiI | TTATAA | 1 cut(s) | 177 |
| Psp124BI | GAGCTC | 2 cut(s) | 348, 459 |
| Psp1406I | AACGTT | 1 cut(s) | 96 |
| PspN4I | GGNNCC | 2 cut(s) | 355, 466 |
| RseI | CAYNNNNRTG | 1 cut(s) | 15 |
| SacI | GAGCTC | 2 cut(s) | 348, 459 |
| SapI | GCTCTTC | 1 cut(s) | 195 |
| SatI | GCNGC | 1 cut(s) | 83 |
| Sau3AI | GATC | 1 cut(s) | 246 |
| SchI | GAGTC | 4 cut(s) | 98, 250, 361, 557 |
| SduI | GDGCHC | 2 cut(s) | 348, 459 |
| SfcI | CTRYAG | 1 cut(s) | 556 |
| SfoI | GGCGCC | 2 cut(s) | 355, 466 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 15 |
| SmlI | CTYRAG | 1 cut(s) | 77 |
| SmoI | CTYRAG | 1 cut(s) | 77 |
| Sse9I | AATT | 2 cut(s) | 298, 409 |
| SsiI | CCGC | 1 cut(s) | 145 |
| SspDI | GGCGCC | 2 cut(s) | 353, 464 |
| SspI | AATATT | 1 cut(s) | 496 |
| SspMI | CTAG | 1 cut(s) | 519 |
| SstI | GAGCTC | 2 cut(s) | 348, 459 |
| StyI | CCWWGG | 1 cut(s) | 525 |
| TaiI | ACGT | 5 cut(s) | 26, 99, 328, 439, 477 |
| TaqI | TCGA | 1 cut(s) | 249 |
| TasI | AATT | 2 cut(s) | 298, 409 |
| TscAI | CASTG | 2 cut(s) | 288, 399 |
| TseFI | GTSAC | 1 cut(s) | 101 |
| TseI | GCWGC | 1 cut(s) | 82 |
| Tsp45I | GTSAC | 1 cut(s) | 101 |
| TspDTI | ATGAA | 7 cut(s) | 29, 48, 329, 374, 440, 485, 518 |
| TspRI | CASTG | 2 cut(s) | 288, 399 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 44 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 63 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 1 cut(s) | 519 |