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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 392, 555 |
| AccB1I | GGYRCC | 1 cut(s) | 330 |
| AciI | CCGC | 3 cut(s) | 334, 721, 1003 |
| AclWI | GGATC | 3 cut(s) | 20, 1193, 1263 |
| AcoI | YGGCCR | 2 cut(s) | 481, 644 |
| AcsI | RAATTY | 2 cut(s) | 522, 685 |
| AfaI | GTAC | 1 cut(s) | 890 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 340, 401, 430, 490, 564, 593, 653, 754 |
| AgeI | ACCGGT | 1 cut(s) | 442 |
| AgsI | TTSAA | 6 cut(s) | 38, 260, 292, 901, 1018, 1031 |
| AjiI | CACGTC | 1 cut(s) | 778 |
| AjnI | CCWGG | 3 cut(s) | 6, 747, 771 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 659, 691, 930, 962 |
| AluBI | AGCT | 8 cut(s) | 31, 357, 532, 695, 797, 803, 1204, 1214 |
| AluI | AGCT | 8 cut(s) | 31, 357, 532, 695, 797, 803, 1204, 1214 |
| Alw21I | GWGCWC | 1 cut(s) | 1206 |
| Alw26I | GTCTC | 1 cut(s) | 934 |
| AlwI | GGATC | 3 cut(s) | 20, 1193, 1263 |
| Ama87I | CYCGRG | 1 cut(s) | 761 |
| AoxI | GGCC | 6 cut(s) | 385, 421, 481, 548, 584, 644 |
| ApeKI | GCWGC | 5 cut(s) | 25, 28, 398, 561, 821 |
| ApoI | RAATTY | 2 cut(s) | 522, 685 |
| AsiGI | ACCGGT | 1 cut(s) | 442 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1047 |
| AspS9I | GGNCC | 4 cut(s) | 386, 422, 549, 585 |
| AvaI | CYCGRG | 1 cut(s) | 761 |
| BanI | GGYRCC | 1 cut(s) | 330 |
| BanII | GRGCYC | 1 cut(s) | 1206 |
| BbsI | GAAGAC | 1 cut(s) | 915 |
| Bbv12I | GWGCWC | 1 cut(s) | 1206 |
| BbvI | GCAGC | 5 cut(s) | 37, 40, 410, 573, 833 |
| BccI | CCATC | 7 cut(s) | 63, 108, 734, 857, 984, 1138, 1139 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1157, 1191 |
| BciT130I | CCWGG | 3 cut(s) | 8, 749, 773 |
| BcoDI | GTCTC | 1 cut(s) | 934 |
| BfaI | CTAG | 2 cut(s) | 66, 980 |
| BfmI | CTRYAG | 2 cut(s) | 396, 559 |
| BfuAI | ACCTGC | 2 cut(s) | 392, 555 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 830 |
| BglII | AGATCT | 1 cut(s) | 320 |
| BisI | GCNGC | 6 cut(s) | 26, 29, 334, 399, 562, 822 |
| BlsI | GCNGC | 6 cut(s) | 27, 30, 335, 400, 563, 823 |
| Bme1390I | CCNGG | 3 cut(s) | 8, 749, 773 |
| BmeT110I | CYCGRG | 1 cut(s) | 761 |
| BmgBI | CACGTC | 1 cut(s) | 778 |
| BmgT120I | GGNCC | 4 cut(s) | 386, 422, 549, 585 |
| BmiI | GGNNCC | 1 cut(s) | 332 |
| BmrFI | CCNGG | 3 cut(s) | 8, 749, 773 |
| BmsI | GCATC | 3 cut(s) | 118, 736, 1084 |
| BpiI | GAAGAC | 1 cut(s) | 915 |
| BpmI | CTGGAG | 1 cut(s) | 869 |
| BpuEI | CTTGAG | 2 cut(s) | 716, 783 |
| Bsa29I | ATCGAT | 1 cut(s) | 1167 |
| BsaI | GGTCTC | 1 cut(s) | 934 |
| BsaJI | CCNNGG | 2 cut(s) | 7, 1272 |
| BsaWI | WCCGGW | 3 cut(s) | 430, 442, 593 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 340, 401, 430, 490, 564, 593, 653, 754 |
| Bse118I | RCCGGY | 1 cut(s) | 442 |
| Bse1I | ACTGG | 3 cut(s) | 348, 384, 886 |
| BseBI | CCWGG | 3 cut(s) | 8, 749, 773 |
| BseCI | ATCGAT | 1 cut(s) | 1167 |
| BseDI | CCNNGG | 2 cut(s) | 7, 1272 |
| BseGI | GGATG | 4 cut(s) | 133, 181, 852, 880 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 340, 401, 430, 490, 564, 593, 653, 754 |
| BseMII | CTCAG | 2 cut(s) | 425, 588 |
| BseNI | ACTGG | 3 cut(s) | 348, 384, 886 |
| BseXI | GCAGC | 5 cut(s) | 37, 40, 410, 573, 833 |
| BseYI | CCCAGC | 1 cut(s) | 200 |
| BshFI | GGCC | 6 cut(s) | 387, 423, 483, 550, 586, 646 |
| BshNI | GGYRCC | 1 cut(s) | 330 |
| BshTI | ACCGGT | 1 cut(s) | 442 |
| BshVI | ATCGAT | 1 cut(s) | 1167 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1206 |
| BsiHKCI | CYCGRG | 1 cut(s) | 761 |
| BsiSI | CCGG | 7 cut(s) | 431, 443, 468, 480, 594, 631, 643 |
| BslFI | GGGAC | 2 cut(s) | 508, 671 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 340, 401, 430, 490, 564, 593, 653, 754 |
| BsmAI | GTCTC | 1 cut(s) | 934 |
| BsmFI | GGGAC | 2 cut(s) | 508, 671 |
| BsnI | GGCC | 6 cut(s) | 387, 423, 483, 550, 586, 646 |
| Bso31I | GGTCTC | 1 cut(s) | 934 |
| BsoBI | CYCGRG | 1 cut(s) | 761 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1206 |
| Bsp143I | GATC | 6 cut(s) | 12, 153, 320, 1086, 1185, 1268 |
| BspACI | CCGC | 3 cut(s) | 334, 721, 1003 |
| BspANI | GGCC | 6 cut(s) | 387, 423, 483, 550, 586, 646 |
| BspCNI | CTCAG | 2 cut(s) | 424, 587 |
| BspDI | ATCGAT | 1 cut(s) | 1167 |
| BspHI | TCATGA | 1 cut(s) | 1198 |
| BspLI | GGNNCC | 1 cut(s) | 332 |
| BspMAI | CTGCAG | 2 cut(s) | 400, 563 |
| BspMI | ACCTGC | 2 cut(s) | 392, 555 |
| BspPI | GGATC | 3 cut(s) | 20, 1193, 1263 |
| BspT107I | GGYRCC | 1 cut(s) | 330 |
| BspTNI | GGTCTC | 1 cut(s) | 934 |
| BsrFI | RCCGGY | 1 cut(s) | 442 |
| BsrI | ACTGG | 3 cut(s) | 348, 384, 886 |
| BssAI | RCCGGY | 1 cut(s) | 442 |
| BssECI | CCNNGG | 2 cut(s) | 7, 1272 |
| BssMI | GATC | 6 cut(s) | 12, 153, 320, 1086, 1185, 1268 |
| Bst2UI | CCWGG | 3 cut(s) | 8, 749, 773 |
| Bst4CI | ACNGT | 2 cut(s) | 161, 787 |
| BstC8I | GCNNGC | 8 cut(s) | 23, 355, 385, 421, 548, 584, 725, 795 |
| BstDEI | CTNAG | 3 cut(s) | 411, 574, 1152 |
| BstDSI | CCRYGG | 1 cut(s) | 1272 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 399, 562 |
| BstF5I | GGATG | 4 cut(s) | 133, 181, 852, 880 |
| BstKTI | GATC | 6 cut(s) | 15, 156, 323, 1089, 1188, 1271 |
| BstMAI | GTCTC | 1 cut(s) | 934 |
| BstMBI | GATC | 6 cut(s) | 12, 153, 320, 1086, 1185, 1268 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 350, 809, 818, 830, 839 |
| BstNI | CCWGG | 3 cut(s) | 8, 749, 773 |
| BstNSI | RCATGY | 1 cut(s) | 25 |
| BstSCI | CCNGG | 3 cut(s) | 6, 747, 771 |
| BstSFI | CTRYAG | 2 cut(s) | 396, 559 |
| BstV1I | GCAGC | 5 cut(s) | 37, 40, 410, 573, 833 |
| BstV2I | GAAGAC | 1 cut(s) | 915 |
| BstX2I | RGATCY | 3 cut(s) | 12, 320, 1268 |
| BstYI | RGATCY | 3 cut(s) | 12, 320, 1268 |
| Bsu15I | ATCGAT | 1 cut(s) | 1167 |
| BsuRI | GGCC | 6 cut(s) | 387, 423, 483, 550, 586, 646 |
| BsuTUI | ATCGAT | 1 cut(s) | 1167 |
| BtgI | CCRYGG | 1 cut(s) | 1272 |
| BtgZI | GCGATG | 1 cut(s) | 1112 |
| BtrI | CACGTC | 1 cut(s) | 778 |
| BtsCI | GGATG | 4 cut(s) | 133, 181, 852, 880 |
| BtsIMutI | CAGTG | 1 cut(s) | 355 |
| BveI | ACCTGC | 2 cut(s) | 392, 555 |
| Cac8I | GCNNGC | 8 cut(s) | 23, 355, 385, 421, 548, 584, 725, 795 |
| CciI | TCATGA | 1 cut(s) | 1198 |
| Cfr10I | RCCGGY | 1 cut(s) | 442 |
| Cfr13I | GGNCC | 4 cut(s) | 386, 422, 549, 585 |
| ClaI | ATCGAT | 1 cut(s) | 1167 |
| Csp6I | GTAC | 1 cut(s) | 889 |
| CspAI | ACCGGT | 1 cut(s) | 442 |
| CviAII | CATG | 4 cut(s) | 22, 171, 1199, 1235 |
| CviQI | GTAC | 1 cut(s) | 889 |
| DdeI | CTNAG | 3 cut(s) | 411, 574, 1152 |
| DpnI | GATC | 6 cut(s) | 14, 155, 322, 1088, 1187, 1270 |
| DpnII | GATC | 6 cut(s) | 12, 153, 320, 1086, 1185, 1268 |
| EaeI | YGGCCR | 2 cut(s) | 481, 644 |
| EciI | GGCGGA | 1 cut(s) | 710 |
| Ecl136II | GAGCTC | 1 cut(s) | 1204 |
| Eco24I | GRGCYC | 1 cut(s) | 1206 |
| Eco31I | GGTCTC | 1 cut(s) | 934 |
| Eco32I | GATATC | 1 cut(s) | 718 |
| Eco53kI | GAGCTC | 1 cut(s) | 1204 |
| Eco88I | CYCGRG | 1 cut(s) | 761 |
| EcoICRI | GAGCTC | 1 cut(s) | 1204 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 399, 562 |
| EcoRII | CCWGG | 3 cut(s) | 6, 747, 771 |
| EcoRV | GATATC | 1 cut(s) | 718 |
| EcoT22I | ATGCAT | 1 cut(s) | 172 |
| EcoT38I | GRGCYC | 1 cut(s) | 1206 |
| FaeI | CATG | 4 cut(s) | 25, 174, 1202, 1238 |
| FaqI | GGGAC | 2 cut(s) | 508, 671 |
| FatI | CATG | 4 cut(s) | 21, 170, 1198, 1234 |
| FauNDI | CATATG | 1 cut(s) | 870 |
| Fnu4HI | GCNGC | 6 cut(s) | 26, 29, 334, 399, 562, 822 |
| FokI | GGATG | 4 cut(s) | 140, 188, 839, 887 |
| FriOI | GRGCYC | 1 cut(s) | 1206 |
| Fsp4HI | GCNGC | 6 cut(s) | 26, 29, 334, 399, 562, 822 |
| FspBI | CTAG | 2 cut(s) | 66, 980 |
| GluI | GCNGC | 6 cut(s) | 26, 29, 334, 399, 562, 822 |
| GsaI | CCCAGC | 1 cut(s) | 204 |
| GsuI | CTGGAG | 1 cut(s) | 869 |
| HaeIII | GGCC | 6 cut(s) | 387, 423, 483, 550, 586, 646 |
| HapII | CCGG | 7 cut(s) | 431, 443, 468, 480, 594, 631, 643 |
| Hin1II | CATG | 4 cut(s) | 25, 174, 1202, 1238 |
| HincII | GTYRAC | 6 cut(s) | 407, 448, 459, 570, 611, 622 |
| HindII | GTYRAC | 6 cut(s) | 407, 448, 459, 570, 611, 622 |
| HindIII | AAGCTT | 2 cut(s) | 355, 801 |
| HinfI | GANTC | 7 cut(s) | 89, 744, 862, 878, 962, 1114, 1164 |
| HpaII | CCGG | 7 cut(s) | 431, 443, 468, 480, 594, 631, 643 |
| Hpy166II | GTNNAC | 6 cut(s) | 407, 448, 459, 570, 611, 622 |
| Hpy188I | TCNGA | 3 cut(s) | 325, 504, 1042 |
| Hpy188III | TCNNGA | 6 cut(s) | 314, 713, 761, 974, 1028, 1199 |
| Hpy8I | GTNNAC | 6 cut(s) | 407, 448, 459, 570, 611, 622 |
| HpyAV | CCTTC | 3 cut(s) | 32, 912, 1135 |
| HpyCH4III | ACNGT | 2 cut(s) | 161, 787 |
| HpyCH4IV | ACGT | 2 cut(s) | 777, 954 |
| HpyCH4V | TGCA | 8 cut(s) | 25, 170, 212, 353, 398, 561, 1139, 1178 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 350, 809, 818, 830, 839 |
| HpyF3I | CTNAG | 3 cut(s) | 411, 574, 1152 |
| HpySE526I | ACGT | 2 cut(s) | 777, 954 |
| Hsp92II | CATG | 4 cut(s) | 25, 174, 1202, 1238 |
| Kzo9I | GATC | 6 cut(s) | 12, 153, 320, 1086, 1185, 1268 |
| LmnI | GCTCC | 4 cut(s) | 136, 818, 888, 1211 |
| Lsp1109I | GCAGC | 5 cut(s) | 37, 40, 410, 573, 833 |
| LweI | GCATC | 3 cut(s) | 118, 736, 1084 |
| MaeI | CTAG | 2 cut(s) | 66, 980 |
| MaeII | ACGT | 2 cut(s) | 777, 954 |
| MaeIII | GTNAC | 2 cut(s) | 959, 1147 |
| MalI | GATC | 6 cut(s) | 14, 155, 322, 1088, 1187, 1270 |
| MboI | GATC | 6 cut(s) | 12, 153, 320, 1086, 1185, 1268 |
| MboII | GAAGA | 6 cut(s) | 131, 917, 920, 950, 1123, 1264 |
| MflI | RGATCY | 3 cut(s) | 12, 320, 1268 |
| MhlI | GDGCHC | 1 cut(s) | 1206 |
| MluCI | AATT | 4 cut(s) | 93, 522, 685, 1070 |
| MlyI | GAGTC | 3 cut(s) | 98, 856, 956 |
| MmeI | TCCRAC | 3 cut(s) | 282, 527, 690 |
| MnlI | CCTC | 6 cut(s) | 402, 420, 565, 583, 700, 1010 |
| Mph1103I | ATGCAT | 1 cut(s) | 172 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1047 |
| MseI | TTAA | 6 cut(s) | 150, 359, 827, 1056, 1064, 1173 |
| MslI | CAYNNNNRTG | 2 cut(s) | 857, 873 |
| MspI | CCGG | 7 cut(s) | 431, 443, 468, 480, 594, 631, 643 |
| MspR9I | CCNGG | 3 cut(s) | 8, 749, 773 |
| MvaI | CCWGG | 3 cut(s) | 8, 749, 773 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 350, 809, 818, 830, 839 |
| NdeI | CATATG | 1 cut(s) | 870 |
| NdeII | GATC | 6 cut(s) | 12, 153, 320, 1086, 1185, 1268 |
| NlaIII | CATG | 4 cut(s) | 25, 174, 1202, 1238 |
| NlaIV | GGNNCC | 1 cut(s) | 332 |
| NmuCI | GTSAC | 1 cut(s) | 959 |
| NsiI | ATGCAT | 1 cut(s) | 172 |
| NspI | RCATGY | 1 cut(s) | 25 |
| PaeI | GCATGC | 1 cut(s) | 25 |
| PaeR7I | CTCGAG | 1 cut(s) | 761 |
| PagI | TCATGA | 1 cut(s) | 1198 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1047 |
| PfeI | GAWTC | 4 cut(s) | 744, 878, 1114, 1164 |
| PfoI | TCCNGGA | 1 cut(s) | 747 |
| PinAI | ACCGGT | 1 cut(s) | 442 |
| PkrI | GCNGC | 6 cut(s) | 27, 30, 335, 400, 563, 823 |
| PleI | GAGTC | 3 cut(s) | 97, 856, 956 |
| PpsI | GAGTC | 3 cut(s) | 97, 856, 956 |
| Psp124BI | GAGCTC | 1 cut(s) | 1206 |
| Psp6I | CCWGG | 3 cut(s) | 6, 747, 771 |
| PspFI | CCCAGC | 1 cut(s) | 200 |
| PspGI | CCWGG | 3 cut(s) | 6, 747, 771 |
| PspN4I | GGNNCC | 1 cut(s) | 332 |
| PspPI | GGNCC | 4 cut(s) | 386, 422, 549, 585 |
| PstI | CTGCAG | 2 cut(s) | 400, 563 |
| PsuI | RGATCY | 3 cut(s) | 12, 320, 1268 |
| RsaI | GTAC | 1 cut(s) | 890 |
| RsaNI | GTAC | 1 cut(s) | 889 |
| RseI | CAYNNNNRTG | 2 cut(s) | 857, 873 |
| SacI | GAGCTC | 1 cut(s) | 1206 |
| SaqAI | TTAA | 6 cut(s) | 150, 359, 827, 1056, 1064, 1173 |
| SatI | GCNGC | 6 cut(s) | 26, 29, 334, 399, 562, 822 |
| Sau3AI | GATC | 6 cut(s) | 12, 153, 320, 1086, 1185, 1268 |
| Sau96I | GGNCC | 4 cut(s) | 386, 422, 549, 585 |
| SchI | GAGTC | 3 cut(s) | 98, 856, 956 |
| ScrFI | CCNGG | 3 cut(s) | 8, 749, 773 |
| SduI | GDGCHC | 1 cut(s) | 1206 |
| SfaNI | GCATC | 3 cut(s) | 118, 736, 1084 |
| SfcI | CTRYAG | 2 cut(s) | 396, 559 |
| Sfr274I | CTCGAG | 1 cut(s) | 761 |
| SlaI | CTCGAG | 1 cut(s) | 761 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 857, 873 |
| SmlI | CTYRAG | 3 cut(s) | 731, 761, 798 |
| SmoI | CTYRAG | 3 cut(s) | 731, 761, 798 |
| SphI | GCATGC | 1 cut(s) | 25 |
| Sse9I | AATT | 4 cut(s) | 93, 522, 685, 1070 |
| SsiI | CCGC | 3 cut(s) | 334, 721, 1003 |
| SspMI | CTAG | 2 cut(s) | 66, 980 |
| SstI | GAGCTC | 1 cut(s) | 1206 |
| StyD4I | CCNGG | 3 cut(s) | 6, 747, 771 |
| TaaI | ACNGT | 2 cut(s) | 161, 787 |
| TaiI | ACGT | 2 cut(s) | 780, 957 |
| TaqI | TCGA | 6 cut(s) | 542, 705, 762, 936, 1162, 1167 |
| TasI | AATT | 4 cut(s) | 93, 522, 685, 1070 |
| TauI | GCSGC | 1 cut(s) | 336 |
| TfiI | GAWTC | 4 cut(s) | 744, 878, 1114, 1164 |
| Tru1I | TTAA | 6 cut(s) | 150, 359, 827, 1056, 1064, 1173 |
| Tru9I | TTAA | 6 cut(s) | 150, 359, 827, 1056, 1064, 1173 |
| TscAI | CASTG | 1 cut(s) | 355 |
| TseFI | GTSAC | 1 cut(s) | 959 |
| TseI | GCWGC | 5 cut(s) | 25, 28, 398, 561, 821 |
| Tsp45I | GTSAC | 1 cut(s) | 959 |
| TspDTI | ATGAA | 3 cut(s) | 192, 1187, 1232 |
| TspGWI | ACGGA | 3 cut(s) | 947, 1198, 1261 |
| TspRI | CASTG | 1 cut(s) | 355 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 399, 562 |
| XapI | RAATTY | 2 cut(s) | 522, 685 |
| XceI | RCATGY | 1 cut(s) | 25 |
| XhoI | CTCGAG | 1 cut(s) | 761 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1047 |
| XspI | CTAG | 2 cut(s) | 66, 980 |
| Zsp2I | ATGCAT | 1 cut(s) | 172 |