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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 361 |
| AclI | AACGTT | 2 cut(s) | 312, 483 |
| AcsI | RAATTY | 2 cut(s) | 17, 428 |
| AfaI | GTAC | 2 cut(s) | 248, 392 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 112 |
| AgsI | TTSAA | 1 cut(s) | 376 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 2 cut(s) | 105, 129 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 1 cut(s) | 155 |
| AluI | AGCT | 1 cut(s) | 155 |
| Alw26I | GTCTC | 1 cut(s) | 292 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 50 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 1 cut(s) | 93 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 2 cut(s) | 17, 428 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 2 cut(s) | 215, 342 |
| BciT130I | CCWGG | 2 cut(s) | 107, 131 |
| BcoDI | GTCTC | 1 cut(s) | 292 |
| BfaI | CTAG | 2 cut(s) | 126, 338 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 2 cut(s) | 107, 131 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmrFI | CCNGG | 2 cut(s) | 107, 131 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 407 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 112 |
| Bse1I | ACTGG | 2 cut(s) | 82, 244 |
| BseBI | CCWGG | 2 cut(s) | 107, 131 |
| BseGI | GGATG | 2 cut(s) | 210, 238 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 112 |
| BseNI | ACTGG | 2 cut(s) | 82, 244 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 112 |
| BsmAI | GTCTC | 1 cut(s) | 292 |
| BsnI | GGCC | 1 cut(s) | 95 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp143I | GATC | 1 cut(s) | 444 |
| BspACI | CCGC | 1 cut(s) | 361 |
| BspANI | GGCC | 1 cut(s) | 95 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrI | ACTGG | 2 cut(s) | 82, 244 |
| BssMI | GATC | 1 cut(s) | 444 |
| Bst2UI | CCWGG | 2 cut(s) | 107, 131 |
| BstC8I | GCNNGC | 1 cut(s) | 153 |
| BstDEI | CTNAG | 2 cut(s) | 184, 513 |
| BstF5I | GGATG | 2 cut(s) | 210, 238 |
| BstKTI | GATC | 1 cut(s) | 447 |
| BstMAI | GTCTC | 1 cut(s) | 292 |
| BstMBI | GATC | 1 cut(s) | 444 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 176, 188, 197 |
| BstNI | CCWGG | 2 cut(s) | 107, 131 |
| BstSCI | CCNGG | 2 cut(s) | 105, 129 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BtgZI | GCGATG | 1 cut(s) | 470 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 2 cut(s) | 210, 238 |
| Cac8I | GCNNGC | 1 cut(s) | 153 |
| CaiI | CAGNNNCTG | 1 cut(s) | 50 |
| Csp6I | GTAC | 2 cut(s) | 247, 391 |
| CviAII | CATG | 1 cut(s) | 10 |
| CviJI | RGCY | 8 cut(s) | 48, 95, 124, 129, 155, 182, 206, 357 |
| CviKI_1 | RGCY | 8 cut(s) | 48, 95, 124, 129, 155, 182, 206, 357 |
| CviQI | GTAC | 2 cut(s) | 247, 391 |
| DdeI | CTNAG | 2 cut(s) | 184, 513 |
| DpnI | GATC | 1 cut(s) | 446 |
| DpnII | GATC | 1 cut(s) | 444 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoRI | GAATTC | 1 cut(s) | 428 |
| EcoRII | CCWGG | 2 cut(s) | 105, 129 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| FaeI | CATG | 1 cut(s) | 13 |
| FaiI | YATR | 8 cut(s) | 11, 113, 228, 230, 257, 354, 478, 505 |
| FatI | CATG | 1 cut(s) | 9 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 2 cut(s) | 197, 245 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 2 cut(s) | 126, 338 |
| GluI | GCNGC | 1 cut(s) | 180 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| Hin1II | CATG | 1 cut(s) | 13 |
| HinfI | GANTC | 3 cut(s) | 220, 236, 320 |
| Hpy166II | GTNNAC | 1 cut(s) | 79 |
| Hpy188III | TCNNGA | 6 cut(s) | 51, 71, 119, 317, 332, 386 |
| Hpy8I | GTNNAC | 1 cut(s) | 79 |
| HpyAV | CCTTC | 1 cut(s) | 270 |
| HpyCH4IV | ACGT | 3 cut(s) | 135, 312, 483 |
| HpyCH4V | TGCA | 1 cut(s) | 480 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 176, 188, 197 |
| HpyF3I | CTNAG | 2 cut(s) | 184, 513 |
| HpySE526I | ACGT | 3 cut(s) | 135, 312, 483 |
| Hsp92II | CATG | 1 cut(s) | 13 |
| Kzo9I | GATC | 1 cut(s) | 444 |
| LmnI | GCTCC | 3 cut(s) | 34, 246, 467 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| MaeI | CTAG | 2 cut(s) | 126, 338 |
| MaeII | ACGT | 3 cut(s) | 135, 312, 483 |
| MaeIII | GTNAC | 2 cut(s) | 5, 317 |
| MalI | GATC | 1 cut(s) | 446 |
| MboI | GATC | 1 cut(s) | 444 |
| MboII | GAAGA | 1 cut(s) | 308 |
| MluCI | AATT | 3 cut(s) | 17, 428, 492 |
| MlyI | GAGTC | 3 cut(s) | 214, 230, 314 |
| MnlI | CCTC | 3 cut(s) | 181, 368, 511 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MseI | TTAA | 3 cut(s) | 414, 422, 488 |
| MslI | CAYNNNNRTG | 3 cut(s) | 215, 231, 475 |
| MspR9I | CCNGG | 2 cut(s) | 107, 131 |
| MvaI | CCWGG | 2 cut(s) | 107, 131 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 176, 188, 197 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 1 cut(s) | 444 |
| NlaIII | CATG | 1 cut(s) | 13 |
| NmuCI | GTSAC | 1 cut(s) | 317 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfoI | TCCNGGA | 1 cut(s) | 105 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 3 cut(s) | 214, 230, 314 |
| PpsI | GAGTC | 3 cut(s) | 214, 230, 314 |
| Psp1406I | AACGTT | 2 cut(s) | 312, 483 |
| Psp6I | CCWGG | 2 cut(s) | 105, 129 |
| PspGI | CCWGG | 2 cut(s) | 105, 129 |
| PstNI | CAGNNNCTG | 1 cut(s) | 50 |
| RsaI | GTAC | 2 cut(s) | 248, 392 |
| RsaNI | GTAC | 2 cut(s) | 247, 391 |
| RseI | CAYNNNNRTG | 3 cut(s) | 215, 231, 475 |
| SaqAI | TTAA | 3 cut(s) | 414, 422, 488 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 1 cut(s) | 444 |
| SchI | GAGTC | 3 cut(s) | 214, 230, 314 |
| ScrFI | CCNGG | 2 cut(s) | 107, 131 |
| SetI | ASST | 7 cut(s) | 65, 138, 157, 281, 315, 339, 486 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 215, 231, 475 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 386 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 386 |
| Sse9I | AATT | 3 cut(s) | 17, 428, 492 |
| SsiI | CCGC | 1 cut(s) | 361 |
| SspI | AATATT | 1 cut(s) | 303 |
| SspMI | CTAG | 2 cut(s) | 126, 338 |
| StyD4I | CCNGG | 2 cut(s) | 105, 129 |
| TaiI | ACGT | 3 cut(s) | 138, 315, 486 |
| TaqI | TCGA | 2 cut(s) | 120, 294 |
| TasI | AATT | 3 cut(s) | 17, 428, 492 |
| TatI | WGTACW | 1 cut(s) | 390 |
| Tru1I | TTAA | 3 cut(s) | 414, 422, 488 |
| Tru9I | TTAA | 3 cut(s) | 414, 422, 488 |
| TseFI | GTSAC | 1 cut(s) | 317 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 1 cut(s) | 317 |
| TspDTI | ATGAA | 4 cut(s) | 26, 114, 272, 276 |
| XapI | RAATTY | 2 cut(s) | 17, 428 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 103 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 2 cut(s) | 126, 338 |