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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 409 |
| AciI | CCGC | 1 cut(s) | 79 |
| AcoI | YGGCCR | 1 cut(s) | 396 |
| AcyI | GRCGYC | 1 cut(s) | 410 |
| AdeI | CACNNNGTG | 1 cut(s) | 591 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 512 |
| AgsI | TTSAA | 1 cut(s) | 447 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 3 cut(s) | 49, 105, 129 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 2 cut(s) | 532, 583 |
| AluI | AGCT | 2 cut(s) | 532, 583 |
| Alw21I | GWGCWC | 2 cut(s) | 476, 534 |
| AoxI | GGCC | 3 cut(s) | 46, 93, 396 |
| AspLEI | GCGC | 1 cut(s) | 412 |
| AspS9I | GGNCC | 1 cut(s) | 47 |
| AsuHPI | GGTGA | 2 cut(s) | 211, 540 |
| BaeGI | GKGCMC | 1 cut(s) | 519 |
| BalI | TGGCCA | 1 cut(s) | 398 |
| BanI | GGYRCC | 1 cut(s) | 409 |
| BanII | GRGCYC | 2 cut(s) | 126, 534 |
| BbsI | GAAGAC | 1 cut(s) | 273 |
| Bbv12I | GWGCWC | 2 cut(s) | 476, 534 |
| BccI | CCATC | 2 cut(s) | 92, 437 |
| BciT130I | CCWGG | 3 cut(s) | 51, 107, 131 |
| BciVI | GTATCC | 2 cut(s) | 103, 513 |
| BfaI | CTAG | 3 cut(s) | 273, 338, 619 |
| BfoI | RGCGCY | 1 cut(s) | 413 |
| BfuI | GTATCC | 2 cut(s) | 103, 513 |
| Bme1390I | CCNGG | 3 cut(s) | 51, 107, 131 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 1 cut(s) | 47 |
| BmiI | GGNNCC | 2 cut(s) | 354, 411 |
| BmrFI | CCNGG | 3 cut(s) | 51, 107, 131 |
| BmsI | GCATC | 3 cut(s) | 94, 188, 429 |
| BpiI | GAAGAC | 1 cut(s) | 273 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 140 |
| BsaHI | GRCGYC | 1 cut(s) | 410 |
| BsaJI | CCNNGG | 2 cut(s) | 49, 183 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 512 |
| Bse1I | ACTGG | 2 cut(s) | 24, 244 |
| Bse3DI | GCAATG | 1 cut(s) | 316 |
| BseBI | CCWGG | 3 cut(s) | 51, 107, 131 |
| BseDI | CCNNGG | 2 cut(s) | 49, 183 |
| BseGI | GGATG | 3 cut(s) | 179, 238, 429 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 512 |
| BseMI | GCAATG | 1 cut(s) | 316 |
| BseMII | CTCAG | 1 cut(s) | 461 |
| BseNI | ACTGG | 2 cut(s) | 24, 244 |
| BseSI | GKGCMC | 1 cut(s) | 519 |
| BseYI | CCCAGC | 1 cut(s) | 125 |
| BshFI | GGCC | 3 cut(s) | 48, 95, 398 |
| BshNI | GGYRCC | 1 cut(s) | 409 |
| BsiHKAI | GWGCWC | 2 cut(s) | 476, 534 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 512 |
| BsnI | GGCC | 3 cut(s) | 48, 95, 398 |
| Bsp1286I | GDGCHC | 4 cut(s) | 126, 476, 519, 534 |
| Bsp143I | GATC | 4 cut(s) | 154, 507, 603, 615 |
| BspACI | CCGC | 1 cut(s) | 79 |
| BspANI | GGCC | 3 cut(s) | 48, 95, 398 |
| BspCNI | CTCAG | 1 cut(s) | 462 |
| BspHI | TCATGA | 1 cut(s) | 534 |
| BspLI | GGNNCC | 2 cut(s) | 354, 411 |
| BspT107I | GGYRCC | 1 cut(s) | 409 |
| BsrDI | GCAATG | 1 cut(s) | 316 |
| BsrI | ACTGG | 2 cut(s) | 24, 244 |
| BssECI | CCNNGG | 2 cut(s) | 49, 183 |
| BssMI | GATC | 4 cut(s) | 154, 507, 603, 615 |
| BssNI | GRCGYC | 1 cut(s) | 410 |
| BssT1I | CCWWGG | 1 cut(s) | 183 |
| Bst2UI | CCWGG | 3 cut(s) | 51, 107, 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| Bst6I | CTCTTC | 1 cut(s) | 353 |
| BstACI | GRCGYC | 1 cut(s) | 410 |
| BstC8I | GCNNGC | 1 cut(s) | 83 |
| BstDEI | CTNAG | 2 cut(s) | 422, 470 |
| BstF5I | GGATG | 3 cut(s) | 179, 238, 429 |
| BstH2I | RGCGCY | 1 cut(s) | 413 |
| BstHHI | GCGC | 1 cut(s) | 412 |
| BstKTI | GATC | 4 cut(s) | 157, 510, 606, 618 |
| BstMBI | GATC | 4 cut(s) | 154, 507, 603, 615 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 448, 580 |
| BstNI | CCWGG | 3 cut(s) | 51, 107, 131 |
| BstSCI | CCNGG | 3 cut(s) | 49, 105, 129 |
| BstSLI | GKGCMC | 1 cut(s) | 519 |
| BstV2I | GAAGAC | 1 cut(s) | 273 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 406 |
| BsuI | GTATCC | 2 cut(s) | 103, 513 |
| BsuRI | GGCC | 3 cut(s) | 48, 95, 398 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 3 cut(s) | 179, 238, 429 |
| BtsIMutI | CAGTG | 1 cut(s) | 322 |
| Cac8I | GCNNGC | 1 cut(s) | 83 |
| CciI | TCATGA | 1 cut(s) | 534 |
| CfoI | GCGC | 1 cut(s) | 412 |
| Cfr13I | GGNCC | 1 cut(s) | 47 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 2 cut(s) | 400, 535 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 2 cut(s) | 422, 470 |
| DinI | GGCGCC | 1 cut(s) | 411 |
| DpnI | GATC | 4 cut(s) | 156, 509, 605, 617 |
| DpnII | GATC | 4 cut(s) | 154, 507, 603, 615 |
| DraIII | CACNNNGTG | 1 cut(s) | 591 |
| EaeI | YGGCCR | 1 cut(s) | 396 |
| Eam1104I | CTCTTC | 1 cut(s) | 353 |
| EarI | CTCTTC | 1 cut(s) | 353 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 532 |
| Eco130I | CCWWGG | 1 cut(s) | 183 |
| Eco24I | GRGCYC | 2 cut(s) | 126, 534 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco53kI | GAGCTC | 1 cut(s) | 532 |
| EcoICRI | GAGCTC | 1 cut(s) | 532 |
| EcoRII | CCWGG | 3 cut(s) | 49, 105, 129 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EcoT14I | CCWWGG | 1 cut(s) | 183 |
| EcoT38I | GRGCYC | 2 cut(s) | 126, 534 |
| EgeI | GGCGCC | 1 cut(s) | 411 |
| EheI | GGCGCC | 1 cut(s) | 411 |
| ErhI | CCWWGG | 1 cut(s) | 183 |
| FaeI | CATG | 2 cut(s) | 403, 538 |
| FaiI | YATR | 9 cut(s) | 60, 228, 230, 255, 257, 401, 536, 564, 590 |
| FatI | CATG | 2 cut(s) | 399, 534 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| FokI | GGATG | 3 cut(s) | 166, 245, 416 |
| FriOI | GRGCYC | 2 cut(s) | 126, 534 |
| FspBI | CTAG | 3 cut(s) | 273, 338, 619 |
| GlaI | GCGC | 1 cut(s) | 411 |
| GsaI | CCCAGC | 1 cut(s) | 129 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeII | RGCGCY | 1 cut(s) | 413 |
| HaeIII | GGCC | 3 cut(s) | 48, 95, 398 |
| HhaI | GCGC | 1 cut(s) | 412 |
| Hin1I | GRCGYC | 1 cut(s) | 410 |
| Hin1II | CATG | 2 cut(s) | 403, 538 |
| Hin6I | GCGC | 1 cut(s) | 410 |
| HinP1I | GCGC | 1 cut(s) | 410 |
| HincII | GTYRAC | 1 cut(s) | 366 |
| HindII | GTYRAC | 1 cut(s) | 366 |
| HinfI | GANTC | 6 cut(s) | 102, 115, 220, 236, 320, 466 |
| HphI | GGTGA | 2 cut(s) | 211, 540 |
| Hpy166II | GTNNAC | 1 cut(s) | 366 |
| Hpy188I | TCNGA | 2 cut(s) | 471, 507 |
| Hpy188III | TCNNGA | 6 cut(s) | 71, 119, 332, 491, 535, 607 |
| Hpy8I | GTNNAC | 1 cut(s) | 366 |
| HpyAV | CCTTC | 1 cut(s) | 270 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 3 cut(s) | 135, 368, 389 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 448, 580 |
| HpyF3I | CTNAG | 2 cut(s) | 422, 470 |
| HpySE526I | ACGT | 3 cut(s) | 135, 368, 389 |
| Hsp92I | GRCGYC | 1 cut(s) | 410 |
| Hsp92II | CATG | 2 cut(s) | 403, 538 |
| HspAI | GCGC | 1 cut(s) | 410 |
| KasI | GGCGCC | 1 cut(s) | 409 |
| Kzo9I | GATC | 4 cut(s) | 154, 507, 603, 615 |
| LmnI | GCTCC | 1 cut(s) | 34 |
| LweI | GCATC | 3 cut(s) | 94, 188, 429 |
| MaeI | CTAG | 3 cut(s) | 273, 338, 619 |
| MaeII | ACGT | 3 cut(s) | 135, 368, 389 |
| MaeIII | GTNAC | 2 cut(s) | 317, 546 |
| MalI | GATC | 4 cut(s) | 156, 509, 605, 617 |
| MboI | GATC | 4 cut(s) | 154, 507, 603, 615 |
| MboII | GAAGA | 5 cut(s) | 275, 278, 370, 550, 613 |
| MhlI | GDGCHC | 4 cut(s) | 126, 476, 519, 534 |
| MlsI | TGGCCA | 1 cut(s) | 398 |
| MluNI | TGGCCA | 1 cut(s) | 398 |
| Mly113I | GGCGCC | 1 cut(s) | 410 |
| MlyI | GAGTC | 3 cut(s) | 214, 314, 475 |
| MnlI | CCTC | 5 cut(s) | 57, 181, 354, 376, 464 |
| Mox20I | TGGCCA | 1 cut(s) | 398 |
| MscI | TGGCCA | 1 cut(s) | 398 |
| MslI | CAYNNNNRTG | 4 cut(s) | 231, 404, 434, 479 |
| Msp20I | TGGCCA | 1 cut(s) | 398 |
| MspR9I | CCNGG | 3 cut(s) | 51, 107, 131 |
| MvaI | CCWGG | 3 cut(s) | 51, 107, 131 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 448, 580 |
| NarI | GGCGCC | 1 cut(s) | 410 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 4 cut(s) | 154, 507, 603, 615 |
| NlaIII | CATG | 2 cut(s) | 403, 538 |
| NlaIV | GGNNCC | 2 cut(s) | 354, 411 |
| NmuCI | GTSAC | 2 cut(s) | 317, 546 |
| PagI | TCATGA | 1 cut(s) | 534 |
| PfeI | GAWTC | 3 cut(s) | 102, 115, 236 |
| PfoI | TCCNGGA | 1 cut(s) | 105 |
| PleI | GAGTC | 3 cut(s) | 214, 314, 474 |
| PluTI | GGCGCC | 1 cut(s) | 413 |
| PpsI | GAGTC | 3 cut(s) | 214, 314, 474 |
| Psp124BI | GAGCTC | 1 cut(s) | 534 |
| Psp6I | CCWGG | 3 cut(s) | 49, 105, 129 |
| PspFI | CCCAGC | 1 cut(s) | 125 |
| PspGI | CCWGG | 3 cut(s) | 49, 105, 129 |
| PspN4I | GGNNCC | 2 cut(s) | 354, 411 |
| PspPI | GGNCC | 1 cut(s) | 47 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 4 cut(s) | 231, 404, 434, 479 |
| SacI | GAGCTC | 1 cut(s) | 534 |
| Sau3AI | GATC | 4 cut(s) | 154, 507, 603, 615 |
| Sau96I | GGNCC | 1 cut(s) | 47 |
| SchI | GAGTC | 3 cut(s) | 214, 314, 475 |
| ScrFI | CCNGG | 3 cut(s) | 51, 107, 131 |
| SduI | GDGCHC | 4 cut(s) | 126, 476, 519, 534 |
| SetI | ASST | 9 cut(s) | 138, 201, 365, 371, 392, 456, 534, 556, 585 |
| SfaNI | GCATC | 3 cut(s) | 94, 188, 429 |
| SfoI | GGCGCC | 1 cut(s) | 411 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 231, 404, 434, 479 |
| SmlI | CTYRAG | 2 cut(s) | 89, 119 |
| SmoI | CTYRAG | 2 cut(s) | 89, 119 |
| SsiI | CCGC | 1 cut(s) | 79 |
| SspDI | GGCGCC | 1 cut(s) | 409 |
| SspI | AATATT | 1 cut(s) | 303 |
| SspMI | CTAG | 3 cut(s) | 273, 338, 619 |
| SstI | GAGCTC | 1 cut(s) | 534 |
| StyD4I | CCNGG | 3 cut(s) | 49, 105, 129 |
| StyI | CCWWGG | 1 cut(s) | 183 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 3 cut(s) | 138, 371, 392 |
| TaqI | TCGA | 2 cut(s) | 294, 492 |
| TfiI | GAWTC | 3 cut(s) | 102, 115, 236 |
| TscAI | CASTG | 1 cut(s) | 322 |
| TseFI | GTSAC | 2 cut(s) | 317, 546 |
| Tsp45I | GTSAC | 2 cut(s) | 317, 546 |
| TspDTI | ATGAA | 4 cut(s) | 272, 276, 497, 551 |
| TspGWI | ACGGA | 2 cut(s) | 359, 365 |
| TspRI | CASTG | 1 cut(s) | 322 |
| XspI | CTAG | 3 cut(s) | 273, 338, 619 |