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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 341 |
| AccII | CGCG | 1 cut(s) | 11 |
| AccIII | TCCGGA | 1 cut(s) | 421 |
| AciI | CCGC | 1 cut(s) | 133 |
| AcsI | RAATTY | 1 cut(s) | 200 |
| AfaI | GTAC | 2 cut(s) | 26, 156 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 34, 452, 502 |
| AflIII | ACRYGT | 1 cut(s) | 550 |
| AgsI | TTSAA | 1 cut(s) | 148 |
| AluBI | AGCT | 1 cut(s) | 334 |
| AluI | AGCT | 1 cut(s) | 334 |
| Alw21I | GWGCWC | 1 cut(s) | 532 |
| Alw26I | GTCTC | 1 cut(s) | 268 |
| Alw44I | GTGCAC | 1 cut(s) | 528 |
| Ama87I | CYCGRG | 1 cut(s) | 65 |
| Aor13HI | TCCGGA | 1 cut(s) | 421 |
| ApaLI | GTGCAC | 1 cut(s) | 528 |
| ApeKI | GCWGC | 1 cut(s) | 70 |
| ApoI | RAATTY | 1 cut(s) | 200 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 177 |
| AspLEI | GCGC | 1 cut(s) | 13 |
| AvaI | CYCGRG | 1 cut(s) | 65 |
| AxyI | CCTNAGG | 1 cut(s) | 474 |
| BaeGI | GKGCMC | 1 cut(s) | 532 |
| BanI | GGYRCC | 1 cut(s) | 341 |
| BbsI | GAAGAC | 2 cut(s) | 45, 248 |
| Bbv12I | GWGCWC | 1 cut(s) | 532 |
| BbvI | GCAGC | 1 cut(s) | 82 |
| BccI | CCATC | 3 cut(s) | 114, 190, 268 |
| BcoDI | GTCTC | 1 cut(s) | 268 |
| BfaI | CTAG | 2 cut(s) | 309, 396 |
| BisI | GCNGC | 1 cut(s) | 71 |
| BlsI | GCNGC | 1 cut(s) | 72 |
| BmeT110I | CYCGRG | 1 cut(s) | 65 |
| BmiI | GGNNCC | 3 cut(s) | 343, 409, 536 |
| BmsI | GCATC | 1 cut(s) | 324 |
| BpiI | GAAGAC | 2 cut(s) | 45, 248 |
| BsaJI | CCNNGG | 2 cut(s) | 402, 538 |
| BsaWI | WCCGGW | 1 cut(s) | 421 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 34, 452, 502 |
| Bse21I | CCTNAGG | 1 cut(s) | 474 |
| BseAI | TCCGGA | 1 cut(s) | 421 |
| BseDI | CCNNGG | 2 cut(s) | 402, 538 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 34, 452, 502 |
| BseSI | GKGCMC | 1 cut(s) | 532 |
| BseXI | GCAGC | 1 cut(s) | 82 |
| Bsh1236I | CGCG | 1 cut(s) | 11 |
| BshNI | GGYRCC | 1 cut(s) | 341 |
| BsiHKAI | GWGCWC | 1 cut(s) | 532 |
| BsiHKCI | CYCGRG | 1 cut(s) | 65 |
| BsiSI | CCGG | 1 cut(s) | 422 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 34, 452, 502 |
| BsmAI | GTCTC | 1 cut(s) | 268 |
| BsmBI | CGTCTC | 1 cut(s) | 268 |
| BsoBI | CYCGRG | 1 cut(s) | 65 |
| Bsp1286I | GDGCHC | 1 cut(s) | 532 |
| Bsp13I | TCCGGA | 1 cut(s) | 421 |
| Bsp143I | GATC | 1 cut(s) | 234 |
| BspACI | CCGC | 1 cut(s) | 133 |
| BspEI | TCCGGA | 1 cut(s) | 421 |
| BspFNI | CGCG | 1 cut(s) | 11 |
| BspHI | TCATGA | 1 cut(s) | 328 |
| BspLI | GGNNCC | 3 cut(s) | 343, 409, 536 |
| BspT107I | GGYRCC | 1 cut(s) | 341 |
| BssECI | CCNNGG | 2 cut(s) | 402, 538 |
| BssMI | GATC | 1 cut(s) | 234 |
| Bst4CI | ACNGT | 1 cut(s) | 539 |
| Bst6I | CTCTTC | 1 cut(s) | 551 |
| BstC8I | GCNNGC | 1 cut(s) | 528 |
| BstDEI | CTNAG | 3 cut(s) | 109, 447, 474 |
| BstDSI | CCRYGG | 2 cut(s) | 402, 538 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 32, 450 |
| BstFNI | CGCG | 1 cut(s) | 11 |
| BstHHI | GCGC | 1 cut(s) | 13 |
| BstKTI | GATC | 1 cut(s) | 237 |
| BstMAI | GTCTC | 1 cut(s) | 268 |
| BstMBI | GATC | 1 cut(s) | 234 |
| BstSLI | GKGCMC | 1 cut(s) | 532 |
| BstUI | CGCG | 1 cut(s) | 11 |
| BstV1I | GCAGC | 1 cut(s) | 82 |
| BstV2I | GAAGAC | 2 cut(s) | 45, 248 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 352 |
| Bsu36I | CCTNAGG | 1 cut(s) | 474 |
| BtgI | CCRYGG | 2 cut(s) | 402, 538 |
| Cac8I | GCNNGC | 1 cut(s) | 528 |
| CciI | TCATGA | 1 cut(s) | 328 |
| CfoI | GCGC | 1 cut(s) | 13 |
| CseI | GACGC | 2 cut(s) | 17, 321 |
| Csp6I | GTAC | 2 cut(s) | 25, 155 |
| CviAII | CATG | 4 cut(s) | 89, 329, 346, 352 |
| CviJI | RGCY | 6 cut(s) | 129, 281, 334, 356, 410, 570 |
| CviKI_1 | RGCY | 6 cut(s) | 129, 281, 334, 356, 410, 570 |
| CviQI | GTAC | 2 cut(s) | 25, 155 |
| DdeI | CTNAG | 3 cut(s) | 109, 447, 474 |
| DpnI | GATC | 1 cut(s) | 236 |
| DpnII | GATC | 1 cut(s) | 234 |
| Eam1104I | CTCTTC | 1 cut(s) | 551 |
| EarI | CTCTTC | 1 cut(s) | 551 |
| Eco81I | CCTNAGG | 1 cut(s) | 474 |
| Eco88I | CYCGRG | 1 cut(s) | 65 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 32, 450 |
| EcoRI | GAATTC | 1 cut(s) | 200 |
| Esp3I | CGTCTC | 1 cut(s) | 268 |
| FaeI | CATG | 4 cut(s) | 92, 332, 349, 355 |
| FatI | CATG | 4 cut(s) | 88, 328, 345, 351 |
| Fnu4HI | GCNGC | 1 cut(s) | 71 |
| Fsp4HI | GCNGC | 1 cut(s) | 71 |
| FspBI | CTAG | 2 cut(s) | 309, 396 |
| GlaI | GCGC | 1 cut(s) | 12 |
| GluI | GCNGC | 1 cut(s) | 71 |
| HapII | CCGG | 1 cut(s) | 422 |
| HgaI | GACGC | 2 cut(s) | 17, 321 |
| HhaI | GCGC | 1 cut(s) | 13 |
| Hin1II | CATG | 4 cut(s) | 92, 332, 349, 355 |
| Hin6I | GCGC | 1 cut(s) | 11 |
| HinP1I | GCGC | 1 cut(s) | 11 |
| HinfI | GANTC | 3 cut(s) | 92, 244, 425 |
| HpaII | CCGG | 1 cut(s) | 422 |
| Hpy166II | GTNNAC | 2 cut(s) | 530, 548 |
| Hpy188I | TCNGA | 1 cut(s) | 294 |
| Hpy188III | TCNNGA | 6 cut(s) | 16, 104, 238, 329, 396, 422 |
| Hpy8I | GTNNAC | 2 cut(s) | 530, 548 |
| HpyAV | CCTTC | 2 cut(s) | 265, 500 |
| HpyCH4III | ACNGT | 1 cut(s) | 539 |
| HpyCH4IV | ACGT | 2 cut(s) | 84, 550 |
| HpyCH4V | TGCA | 1 cut(s) | 530 |
| HpyF3I | CTNAG | 3 cut(s) | 109, 447, 474 |
| HpySE526I | ACGT | 2 cut(s) | 84, 550 |
| Hsp92II | CATG | 4 cut(s) | 92, 332, 349, 355 |
| HspAI | GCGC | 1 cut(s) | 11 |
| Kpn2I | TCCGGA | 1 cut(s) | 421 |
| Kzo9I | GATC | 1 cut(s) | 234 |
| LmnI | GCTCC | 3 cut(s) | 18, 407, 463 |
| LpnPI | CCDG | 4 cut(s) | 29, 110, 117, 435 |
| Lsp1109I | GCAGC | 1 cut(s) | 82 |
| LweI | GCATC | 1 cut(s) | 324 |
| MaeI | CTAG | 2 cut(s) | 309, 396 |
| MaeII | ACGT | 2 cut(s) | 84, 550 |
| MalI | GATC | 1 cut(s) | 236 |
| MboI | GATC | 1 cut(s) | 234 |
| MboII | GAAGA | 3 cut(s) | 50, 253, 568 |
| MhlI | GDGCHC | 1 cut(s) | 532 |
| MluCI | AATT | 5 cut(s) | 166, 200, 417, 430, 487 |
| MlyI | GAGTC | 3 cut(s) | 86, 238, 434 |
| MnlI | CCTC | 7 cut(s) | 28, 38, 140, 446, 496, 524, 560 |
| MroI | TCCGGA | 1 cut(s) | 421 |
| MroXI | GAANNNNTTC | 1 cut(s) | 177 |
| MslI | CAYNNNNRTG | 2 cut(s) | 350, 377 |
| MspI | CCGG | 1 cut(s) | 422 |
| MvnI | CGCG | 1 cut(s) | 11 |
| NdeII | GATC | 1 cut(s) | 234 |
| NlaIII | CATG | 4 cut(s) | 92, 332, 349, 355 |
| NlaIV | GGNNCC | 3 cut(s) | 343, 409, 536 |
| PaeR7I | CTCGAG | 1 cut(s) | 65 |
| PagI | TCATGA | 1 cut(s) | 328 |
| PdmI | GAANNNNTTC | 1 cut(s) | 177 |
| PkrI | GCNGC | 1 cut(s) | 72 |
| PleI | GAGTC | 3 cut(s) | 86, 238, 433 |
| PpsI | GAGTC | 3 cut(s) | 86, 238, 433 |
| PspN4I | GGNNCC | 3 cut(s) | 343, 409, 536 |
| PspXI | VCTCGAGB | 1 cut(s) | 65 |
| RsaI | GTAC | 2 cut(s) | 26, 156 |
| RsaNI | GTAC | 2 cut(s) | 25, 155 |
| RseI | CAYNNNNRTG | 2 cut(s) | 350, 377 |
| SatI | GCNGC | 1 cut(s) | 71 |
| Sau3AI | GATC | 1 cut(s) | 234 |
| SchI | GAGTC | 3 cut(s) | 86, 238, 434 |
| SduI | GDGCHC | 1 cut(s) | 532 |
| SetI | ASST | 8 cut(s) | 30, 87, 257, 326, 336, 457, 516, 553 |
| SfaNI | GCATC | 1 cut(s) | 324 |
| Sfr274I | CTCGAG | 1 cut(s) | 65 |
| SlaI | CTCGAG | 1 cut(s) | 65 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 350, 377 |
| SmlI | CTYRAG | 1 cut(s) | 65 |
| SmoI | CTYRAG | 1 cut(s) | 65 |
| Sse9I | AATT | 5 cut(s) | 166, 200, 417, 430, 487 |
| SsiI | CCGC | 1 cut(s) | 133 |
| SspMI | CTAG | 2 cut(s) | 309, 396 |
| TaaI | ACNGT | 1 cut(s) | 539 |
| TaiI | ACGT | 2 cut(s) | 87, 553 |
| TaqI | TCGA | 2 cut(s) | 66, 237 |
| TasI | AATT | 5 cut(s) | 166, 200, 417, 430, 487 |
| TseI | GCWGC | 1 cut(s) | 70 |
| TspDTI | ATGAA | 3 cut(s) | 17, 317, 362 |
| TspGWI | ACGGA | 2 cut(s) | 142, 547 |
| VneI | GTGCAC | 1 cut(s) | 528 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 32, 450 |
| XapI | RAATTY | 1 cut(s) | 200 |
| XbaI | TCTAGA | 1 cut(s) | 395 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 51 |
| XhoI | CTCGAG | 1 cut(s) | 65 |
| XmnI | GAANNNNTTC | 1 cut(s) | 177 |
| XspI | CTAG | 2 cut(s) | 309, 396 |