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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 306 |
| AccB1I | GGYRCC | 1 cut(s) | 146 |
| AccII | CGCG | 1 cut(s) | 246 |
| AccIII | TCCGGA | 1 cut(s) | 226 |
| AciI | CCGC | 3 cut(s) | 477, 494, 497 |
| AclWI | GGATC | 1 cut(s) | 389 |
| AcoI | YGGCCR | 1 cut(s) | 13 |
| AcyI | GRCGYC | 1 cut(s) | 147 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 257, 328 |
| AgsI | TTSAA | 2 cut(s) | 87, 415 |
| AluBI | AGCT | 2 cut(s) | 139, 161 |
| AluI | AGCT | 2 cut(s) | 139, 161 |
| Alw21I | GWGCWC | 2 cut(s) | 141, 358 |
| Alw26I | GTCTC | 1 cut(s) | 73 |
| Alw44I | GTGCAC | 1 cut(s) | 354 |
| AlwI | GGATC | 1 cut(s) | 389 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 71 |
| Aor13HI | TCCGGA | 1 cut(s) | 226 |
| AoxI | GGCC | 2 cut(s) | 13, 483 |
| ApaLI | GTGCAC | 1 cut(s) | 354 |
| ApeKI | GCWGC | 1 cut(s) | 469 |
| AspLEI | GCGC | 2 cut(s) | 149, 248 |
| AspS9I | GGNCC | 3 cut(s) | 260, 308, 483 |
| AvaII | GGWCC | 2 cut(s) | 260, 308 |
| AxyI | CCTNAGG | 1 cut(s) | 279 |
| BaeGI | GKGCMC | 1 cut(s) | 358 |
| BalI | TGGCCA | 1 cut(s) | 15 |
| BanI | GGYRCC | 1 cut(s) | 146 |
| BanII | GRGCYC | 1 cut(s) | 141 |
| BbsI | GAAGAC | 1 cut(s) | 53 |
| Bbv12I | GWGCWC | 2 cut(s) | 141, 358 |
| BbvI | GCAGC | 1 cut(s) | 481 |
| BcoDI | GTCTC | 1 cut(s) | 73 |
| BfaI | CTAG | 1 cut(s) | 435 |
| BfmI | CTRYAG | 1 cut(s) | 238 |
| BfoI | RGCGCY | 1 cut(s) | 150 |
| BisI | GCNGC | 2 cut(s) | 470, 495 |
| BlsI | GCNGC | 2 cut(s) | 471, 496 |
| Bme18I | GGWCC | 2 cut(s) | 260, 308 |
| BmgT120I | GGNCC | 3 cut(s) | 260, 308, 483 |
| BmiI | GGNNCC | 4 cut(s) | 148, 262, 362, 484 |
| BmrI | ACTGGG | 1 cut(s) | 59 |
| BmsI | GCATC | 1 cut(s) | 431 |
| BmuI | ACTGGG | 1 cut(s) | 59 |
| BpiI | GAAGAC | 1 cut(s) | 53 |
| BsaBI | GATNNNNATC | 1 cut(s) | 38 |
| BsaHI | GRCGYC | 1 cut(s) | 147 |
| BsaJI | CCNNGG | 2 cut(s) | 207, 264 |
| BsaWI | WCCGGW | 1 cut(s) | 226 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 257, 328 |
| Bse118I | RCCGGY | 1 cut(s) | 485 |
| Bse1I | ACTGG | 1 cut(s) | 65 |
| Bse21I | CCTNAGG | 1 cut(s) | 279 |
| Bse8I | GATNNNNATC | 1 cut(s) | 38 |
| BseAI | TCCGGA | 1 cut(s) | 226 |
| BseDI | CCNNGG | 2 cut(s) | 207, 264 |
| BseJI | GATNNNNATC | 1 cut(s) | 38 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 257, 328 |
| BseNI | ACTGG | 1 cut(s) | 65 |
| BseSI | GKGCMC | 1 cut(s) | 358 |
| BseXI | GCAGC | 1 cut(s) | 481 |
| Bsh1236I | CGCG | 1 cut(s) | 246 |
| BshFI | GGCC | 2 cut(s) | 15, 485 |
| BshNI | GGYRCC | 1 cut(s) | 146 |
| BsiHKAI | GWGCWC | 2 cut(s) | 141, 358 |
| BsiSI | CCGG | 2 cut(s) | 227, 486 |
| BslFI | GGGAC | 1 cut(s) | 302 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 257, 328 |
| BsmAI | GTCTC | 1 cut(s) | 73 |
| BsmFI | GGGAC | 1 cut(s) | 302 |
| BsnI | GGCC | 2 cut(s) | 15, 485 |
| Bsp1286I | GDGCHC | 2 cut(s) | 141, 358 |
| Bsp13I | TCCGGA | 1 cut(s) | 226 |
| Bsp143I | GATC | 2 cut(s) | 39, 381 |
| BspACI | CCGC | 3 cut(s) | 477, 494, 497 |
| BspANI | GGCC | 2 cut(s) | 15, 485 |
| BspEI | TCCGGA | 1 cut(s) | 226 |
| BspFNI | CGCG | 1 cut(s) | 246 |
| BspHI | TCATGA | 1 cut(s) | 133 |
| BspLI | GGNNCC | 4 cut(s) | 148, 262, 362, 484 |
| BspPI | GGATC | 1 cut(s) | 389 |
| BspT107I | GGYRCC | 1 cut(s) | 146 |
| BsrFI | RCCGGY | 1 cut(s) | 485 |
| BsrI | ACTGG | 1 cut(s) | 65 |
| BssAI | RCCGGY | 1 cut(s) | 485 |
| BssECI | CCNNGG | 2 cut(s) | 207, 264 |
| BssMI | GATC | 2 cut(s) | 39, 381 |
| BssNI | GRCGYC | 1 cut(s) | 147 |
| BssT1I | CCWWGG | 1 cut(s) | 264 |
| Bst4CI | ACNGT | 2 cut(s) | 448, 458 |
| Bst6I | CTCTTC | 1 cut(s) | 366 |
| BstACI | GRCGYC | 1 cut(s) | 147 |
| BstC8I | GCNNGC | 1 cut(s) | 354 |
| BstDEI | CTNAG | 2 cut(s) | 216, 279 |
| BstDSI | CCRYGG | 1 cut(s) | 207 |
| BstFNI | CGCG | 1 cut(s) | 246 |
| BstH2I | RGCGCY | 1 cut(s) | 150 |
| BstHHI | GCGC | 2 cut(s) | 149, 248 |
| BstKTI | GATC | 2 cut(s) | 42, 384 |
| BstMAI | GTCTC | 1 cut(s) | 73 |
| BstMBI | GATC | 2 cut(s) | 39, 381 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 491 |
| BstSFI | CTRYAG | 1 cut(s) | 238 |
| BstSLI | GKGCMC | 1 cut(s) | 358 |
| BstUI | CGCG | 1 cut(s) | 246 |
| BstV1I | GCAGC | 1 cut(s) | 481 |
| BstV2I | GAAGAC | 1 cut(s) | 53 |
| Bsu36I | CCTNAGG | 1 cut(s) | 279 |
| BsuRI | GGCC | 2 cut(s) | 15, 485 |
| BtgI | CCRYGG | 1 cut(s) | 207 |
| BtsI | GCAGTG | 1 cut(s) | 479 |
| BtsIMutI | CAGTG | 3 cut(s) | 444, 463, 479 |
| Cac8I | GCNNGC | 1 cut(s) | 354 |
| CaiI | CAGNNNCTG | 1 cut(s) | 71 |
| CciI | TCATGA | 1 cut(s) | 133 |
| CfoI | GCGC | 2 cut(s) | 149, 248 |
| Cfr10I | RCCGGY | 1 cut(s) | 485 |
| Cfr13I | GGNCC | 3 cut(s) | 260, 308, 483 |
| CviAII | CATG | 2 cut(s) | 134, 491 |
| CviJI | RGCY | 6 cut(s) | 15, 20, 139, 161, 220, 485 |
| CviKI_1 | RGCY | 6 cut(s) | 15, 20, 139, 161, 220, 485 |
| DdeI | CTNAG | 2 cut(s) | 216, 279 |
| DinI | GGCGCC | 1 cut(s) | 148 |
| DpnI | GATC | 2 cut(s) | 41, 383 |
| DpnII | GATC | 2 cut(s) | 39, 381 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 306 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 306 |
| EaeI | YGGCCR | 1 cut(s) | 13 |
| Eam1104I | CTCTTC | 1 cut(s) | 366 |
| EarI | CTCTTC | 1 cut(s) | 366 |
| Ecl136II | GAGCTC | 1 cut(s) | 139 |
| Eco130I | CCWWGG | 1 cut(s) | 264 |
| Eco24I | GRGCYC | 1 cut(s) | 141 |
| Eco47I | GGWCC | 2 cut(s) | 260, 308 |
| Eco53kI | GAGCTC | 1 cut(s) | 139 |
| Eco81I | CCTNAGG | 1 cut(s) | 279 |
| EcoICRI | GAGCTC | 1 cut(s) | 139 |
| EcoO109I | RGGNCCY | 1 cut(s) | 260 |
| EcoT14I | CCWWGG | 1 cut(s) | 264 |
| EcoT38I | GRGCYC | 1 cut(s) | 141 |
| EgeI | GGCGCC | 1 cut(s) | 148 |
| EheI | GGCGCC | 1 cut(s) | 148 |
| ErhI | CCWWGG | 1 cut(s) | 264 |
| FaeI | CATG | 2 cut(s) | 137, 494 |
| FaqI | GGGAC | 1 cut(s) | 302 |
| FatI | CATG | 2 cut(s) | 133, 490 |
| Fnu4HI | GCNGC | 2 cut(s) | 470, 495 |
| FriOI | GRGCYC | 1 cut(s) | 141 |
| Fsp4HI | GCNGC | 2 cut(s) | 470, 495 |
| FspBI | CTAG | 1 cut(s) | 435 |
| GlaI | GCGC | 2 cut(s) | 148, 247 |
| GluI | GCNGC | 2 cut(s) | 470, 495 |
| HaeII | RGCGCY | 1 cut(s) | 150 |
| HaeIII | GGCC | 2 cut(s) | 15, 485 |
| HapII | CCGG | 2 cut(s) | 227, 486 |
| HhaI | GCGC | 2 cut(s) | 149, 248 |
| Hin1I | GRCGYC | 1 cut(s) | 147 |
| Hin1II | CATG | 2 cut(s) | 137, 494 |
| Hin6I | GCGC | 2 cut(s) | 147, 246 |
| HinP1I | GCGC | 2 cut(s) | 147, 246 |
| HinfI | GANTC | 2 cut(s) | 49, 230 |
| HpaII | CCGG | 2 cut(s) | 227, 486 |
| Hpy166II | GTNNAC | 1 cut(s) | 356 |
| Hpy188I | TCNGA | 2 cut(s) | 99, 506 |
| Hpy188III | TCNNGA | 4 cut(s) | 43, 134, 227, 297 |
| Hpy8I | GTNNAC | 1 cut(s) | 356 |
| HpyAV | CCTTC | 3 cut(s) | 70, 326, 503 |
| HpyCH4III | ACNGT | 2 cut(s) | 448, 458 |
| HpyCH4IV | ACGT | 3 cut(s) | 118, 156, 301 |
| HpyCH4V | TGCA | 4 cut(s) | 74, 113, 356, 444 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 491 |
| HpyF3I | CTNAG | 2 cut(s) | 216, 279 |
| HpySE526I | ACGT | 3 cut(s) | 118, 156, 301 |
| Hsp92I | GRCGYC | 1 cut(s) | 147 |
| Hsp92II | CATG | 2 cut(s) | 137, 494 |
| HspAI | GCGC | 2 cut(s) | 147, 246 |
| KasI | GGCGCC | 1 cut(s) | 146 |
| Kpn2I | TCCGGA | 1 cut(s) | 226 |
| Kzo9I | GATC | 2 cut(s) | 39, 381 |
| LmnI | GCTCC | 1 cut(s) | 268 |
| LpnPI | CCDG | 5 cut(s) | 78, 240, 282, 291, 499 |
| Lsp1109I | GCAGC | 1 cut(s) | 481 |
| LweI | GCATC | 1 cut(s) | 431 |
| MaeI | CTAG | 1 cut(s) | 435 |
| MaeII | ACGT | 3 cut(s) | 118, 156, 301 |
| MalI | GATC | 2 cut(s) | 41, 383 |
| MboI | GATC | 2 cut(s) | 39, 381 |
| MboII | GAAGA | 4 cut(s) | 58, 199, 383, 450 |
| MhlI | GDGCHC | 2 cut(s) | 141, 358 |
| MlsI | TGGCCA | 1 cut(s) | 15 |
| MluCI | AATT | 1 cut(s) | 91 |
| MluNI | TGGCCA | 1 cut(s) | 15 |
| Mly113I | GGCGCC | 1 cut(s) | 147 |
| MlyI | GAGTC | 1 cut(s) | 43 |
| MmeI | TCCRAC | 1 cut(s) | 484 |
| MnlI | CCTC | 6 cut(s) | 251, 342, 367, 389, 454, 473 |
| Mox20I | TGGCCA | 1 cut(s) | 15 |
| MroI | TCCGGA | 1 cut(s) | 226 |
| MscI | TGGCCA | 1 cut(s) | 15 |
| Msp20I | TGGCCA | 1 cut(s) | 15 |
| MspI | CCGG | 2 cut(s) | 227, 486 |
| MvnI | CGCG | 1 cut(s) | 246 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 491 |
| NarI | GGCGCC | 1 cut(s) | 147 |
| NdeII | GATC | 2 cut(s) | 39, 381 |
| NlaIII | CATG | 2 cut(s) | 137, 494 |
| NlaIV | GGNNCC | 4 cut(s) | 148, 262, 362, 484 |
| PagI | TCATGA | 1 cut(s) | 133 |
| PfeI | GAWTC | 1 cut(s) | 230 |
| PkrI | GCNGC | 2 cut(s) | 471, 496 |
| PleI | GAGTC | 1 cut(s) | 43 |
| PluTI | GGCGCC | 1 cut(s) | 150 |
| PpsI | GAGTC | 1 cut(s) | 43 |
| PpuMI | RGGWCCY | 1 cut(s) | 260 |
| Psp124BI | GAGCTC | 1 cut(s) | 141 |
| Psp5II | RGGWCCY | 1 cut(s) | 260 |
| PspN4I | GGNNCC | 4 cut(s) | 148, 262, 362, 484 |
| PspPI | GGNCC | 3 cut(s) | 260, 308, 483 |
| PspPPI | RGGWCCY | 1 cut(s) | 260 |
| PstNI | CAGNNNCTG | 1 cut(s) | 71 |
| SacI | GAGCTC | 1 cut(s) | 141 |
| SatI | GCNGC | 2 cut(s) | 470, 495 |
| Sau3AI | GATC | 2 cut(s) | 39, 381 |
| Sau96I | GGNCC | 3 cut(s) | 260, 308, 483 |
| SchI | GAGTC | 1 cut(s) | 43 |
| SduI | GDGCHC | 2 cut(s) | 141, 358 |
| SetI | ASST | 9 cut(s) | 62, 121, 131, 141, 159, 163, 304, 378, 514 |
| SfaNI | GCATC | 1 cut(s) | 431 |
| SfcI | CTRYAG | 1 cut(s) | 238 |
| SfoI | GGCGCC | 1 cut(s) | 148 |
| SinI | GGWCC | 2 cut(s) | 260, 308 |
| Sse9I | AATT | 1 cut(s) | 91 |
| SsiI | CCGC | 3 cut(s) | 477, 494, 497 |
| SspDI | GGCGCC | 1 cut(s) | 146 |
| SspMI | CTAG | 1 cut(s) | 435 |
| SstI | GAGCTC | 1 cut(s) | 141 |
| StyI | CCWWGG | 1 cut(s) | 264 |
| TaaI | ACNGT | 2 cut(s) | 448, 458 |
| TaiI | ACGT | 3 cut(s) | 121, 159, 304 |
| TaqI | TCGA | 1 cut(s) | 42 |
| TasI | AATT | 1 cut(s) | 91 |
| TauI | GCSGC | 1 cut(s) | 497 |
| TfiI | GAWTC | 1 cut(s) | 230 |
| TscAI | CASTG | 3 cut(s) | 451, 463, 479 |
| TseI | GCWGC | 1 cut(s) | 469 |
| TspDTI | ATGAA | 1 cut(s) | 122 |
| TspGWI | ACGGA | 1 cut(s) | 373 |
| TspRI | CASTG | 3 cut(s) | 451, 463, 479 |
| VneI | GTGCAC | 1 cut(s) | 354 |
| VpaK11BI | GGWCC | 2 cut(s) | 260, 308 |
| XspI | CTAG | 1 cut(s) | 435 |