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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 936 |
| AccBSI | CCGCTC | 1 cut(s) | 493 |
| AccII | CGCG | 3 cut(s) | 229, 741, 921 |
| AclWI | GGATC | 2 cut(s) | 23, 482 |
| AcoI | YGGCCR | 1 cut(s) | 91 |
| AcuI | CTGAAG | 2 cut(s) | 95, 141 |
| AcyI | GRCGYC | 3 cut(s) | 5, 31, 937 |
| AfaI | GTAC | 1 cut(s) | 500 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 228, 932 |
| AgsI | TTSAA | 5 cut(s) | 205, 410, 628, 839, 876 |
| AhlI | ACTAGT | 1 cut(s) | 473 |
| AjiI | CACGTC | 2 cut(s) | 248, 271 |
| AjnI | CCWGG | 1 cut(s) | 195 |
| AluBI | AGCT | 7 cut(s) | 264, 346, 413, 458, 532, 814, 824 |
| AluI | AGCT | 7 cut(s) | 264, 346, 413, 458, 532, 814, 824 |
| Alw21I | GWGCWC | 1 cut(s) | 816 |
| Alw26I | GTCTC | 2 cut(s) | 544, 748 |
| AlwI | GGATC | 2 cut(s) | 23, 482 |
| Ama87I | CYCGRG | 1 cut(s) | 371 |
| AoxI | GGCC | 1 cut(s) | 91 |
| ApeKI | GCWGC | 6 cut(s) | 159, 188, 191, 217, 264, 431 |
| AspA2I | CCTAGG | 1 cut(s) | 377 |
| AspLEI | GCGC | 2 cut(s) | 923, 939 |
| AsuC2I | CCSGG | 1 cut(s) | 9 |
| AvaI | CYCGRG | 1 cut(s) | 371 |
| AvrII | CCTAGG | 1 cut(s) | 377 |
| BalI | TGGCCA | 1 cut(s) | 93 |
| BanI | GGYRCC | 1 cut(s) | 936 |
| BanII | GRGCYC | 1 cut(s) | 816 |
| BbsI | GAAGAC | 4 cut(s) | 83, 129, 525, 728 |
| Bbv12I | GWGCWC | 1 cut(s) | 816 |
| BbvI | GCAGC | 6 cut(s) | 171, 200, 203, 229, 251, 443 |
| BccI | CCATC | 3 cut(s) | 133, 594, 748 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 767, 801 |
| BciT130I | CCWGG | 1 cut(s) | 197 |
| BcnI | CCSGG | 1 cut(s) | 9 |
| BcoDI | GTCTC | 2 cut(s) | 544, 748 |
| BcuI | ACTAGT | 1 cut(s) | 473 |
| BfaI | CTAG | 6 cut(s) | 39, 303, 359, 378, 474, 590 |
| BfoI | RGCGCY | 1 cut(s) | 940 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 440 |
| BglII | AGATCT | 1 cut(s) | 878 |
| BlnI | CCTAGG | 1 cut(s) | 377 |
| Bme1390I | CCNGG | 2 cut(s) | 9, 197 |
| BmeT110I | CYCGRG | 1 cut(s) | 371 |
| BmgBI | CACGTC | 2 cut(s) | 248, 271 |
| BmiI | GGNNCC | 1 cut(s) | 938 |
| BmrFI | CCNGG | 2 cut(s) | 9, 197 |
| BmrI | ACTGGG | 1 cut(s) | 143 |
| BmsI | GCATC | 2 cut(s) | 133, 346 |
| BmuI | ACTGGG | 1 cut(s) | 143 |
| BoxI | GACNNNNGTC | 1 cut(s) | 109 |
| BpiI | GAAGAC | 4 cut(s) | 83, 129, 525, 728 |
| BpmI | CTGGAG | 1 cut(s) | 479 |
| BpuEI | CTTGAG | 1 cut(s) | 326 |
| BpuMI | CCSGG | 1 cut(s) | 9 |
| Bsa29I | ATCGAT | 1 cut(s) | 777 |
| BsaBI | GATNNNNATC | 1 cut(s) | 147 |
| BsaHI | GRCGYC | 3 cut(s) | 5, 31, 937 |
| BsaI | GGTCTC | 1 cut(s) | 544 |
| BsaJI | CCNNGG | 3 cut(s) | 195, 227, 377 |
| BsaWI | WCCGGW | 1 cut(s) | 292 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 228, 932 |
| Bse1I | ACTGG | 3 cut(s) | 94, 138, 496 |
| Bse8I | GATNNNNATC | 1 cut(s) | 147 |
| BseBI | CCWGG | 1 cut(s) | 197 |
| BseCI | ATCGAT | 1 cut(s) | 777 |
| BseDI | CCNNGG | 3 cut(s) | 195, 227, 377 |
| BseGI | GGATG | 5 cut(s) | 144, 148, 462, 490, 852 |
| BseJI | GATNNNNATC | 1 cut(s) | 147 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 228, 932 |
| BseMII | CTCAG | 1 cut(s) | 254 |
| BseNI | ACTGG | 3 cut(s) | 94, 138, 496 |
| BseRI | GAGGAG | 1 cut(s) | 39 |
| BseXI | GCAGC | 6 cut(s) | 171, 200, 203, 229, 251, 443 |
| BseYI | CCCAGC | 2 cut(s) | 155, 222 |
| Bsh1236I | CGCG | 3 cut(s) | 229, 741, 921 |
| BshFI | GGCC | 1 cut(s) | 93 |
| BshNI | GGYRCC | 1 cut(s) | 936 |
| BshVI | ATCGAT | 1 cut(s) | 777 |
| BsiHKAI | GWGCWC | 1 cut(s) | 816 |
| BsiHKCI | CYCGRG | 1 cut(s) | 371 |
| BsiSI | CCGG | 2 cut(s) | 8, 293 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 228, 932 |
| BsmAI | GTCTC | 2 cut(s) | 544, 748 |
| BsmBI | CGTCTC | 1 cut(s) | 748 |
| BsnI | GGCC | 1 cut(s) | 93 |
| Bso31I | GGTCTC | 1 cut(s) | 544 |
| BsoBI | CYCGRG | 1 cut(s) | 371 |
| Bsp1286I | GDGCHC | 1 cut(s) | 816 |
| Bsp143I | GATC | 6 cut(s) | 15, 35, 148, 487, 696, 878 |
| BspANI | GGCC | 1 cut(s) | 93 |
| BspCNI | CTCAG | 1 cut(s) | 253 |
| BspDI | ATCGAT | 1 cut(s) | 777 |
| BspFNI | CGCG | 3 cut(s) | 229, 741, 921 |
| BspLI | GGNNCC | 1 cut(s) | 938 |
| BspPI | GGATC | 2 cut(s) | 23, 482 |
| BspT107I | GGYRCC | 1 cut(s) | 936 |
| BspTNI | GGTCTC | 1 cut(s) | 544 |
| BsrBI | CCGCTC | 1 cut(s) | 493 |
| BsrI | ACTGG | 3 cut(s) | 94, 138, 496 |
| BssECI | CCNNGG | 3 cut(s) | 195, 227, 377 |
| BssMI | GATC | 6 cut(s) | 15, 35, 148, 487, 696, 878 |
| BssNI | GRCGYC | 3 cut(s) | 5, 31, 937 |
| BssT1I | CCWWGG | 1 cut(s) | 377 |
| Bst2UI | CCWGG | 1 cut(s) | 197 |
| Bst4CI | ACNGT | 2 cut(s) | 111, 259 |
| BstACI | GRCGYC | 3 cut(s) | 5, 31, 937 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 388 |
| BstDEI | CTNAG | 3 cut(s) | 240, 436, 762 |
| BstDSI | CCRYGG | 1 cut(s) | 227 |
| BstF5I | GGATG | 5 cut(s) | 144, 148, 462, 490, 852 |
| BstFNI | CGCG | 3 cut(s) | 229, 741, 921 |
| BstH2I | RGCGCY | 1 cut(s) | 940 |
| BstHHI | GCGC | 2 cut(s) | 923, 939 |
| BstKTI | GATC | 6 cut(s) | 18, 38, 151, 490, 699, 881 |
| BstMAI | GTCTC | 2 cut(s) | 544, 748 |
| BstMBI | GATC | 6 cut(s) | 15, 35, 148, 487, 696, 878 |
| BstNI | CCWGG | 1 cut(s) | 197 |
| BstNSI | RCATGY | 1 cut(s) | 391 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 109 |
| BstSCI | CCNGG | 2 cut(s) | 7, 195 |
| BstUI | CGCG | 3 cut(s) | 229, 741, 921 |
| BstV1I | GCAGC | 6 cut(s) | 171, 200, 203, 229, 251, 443 |
| BstV2I | GAAGAC | 4 cut(s) | 83, 129, 525, 728 |
| BstX2I | RGATCY | 1 cut(s) | 878 |
| BstYI | RGATCY | 1 cut(s) | 878 |
| Bsu15I | ATCGAT | 1 cut(s) | 777 |
| BsuRI | GGCC | 1 cut(s) | 93 |
| BsuTUI | ATCGAT | 1 cut(s) | 777 |
| BtgI | CCRYGG | 1 cut(s) | 227 |
| BtgZI | GCGATG | 1 cut(s) | 722 |
| BtrI | CACGTC | 2 cut(s) | 248, 271 |
| BtsCI | GGATG | 5 cut(s) | 144, 148, 462, 490, 852 |
| CfoI | GCGC | 2 cut(s) | 923, 939 |
| Cfr42I | CCGCGG | 1 cut(s) | 230 |
| ClaI | ATCGAT | 1 cut(s) | 777 |
| CseI | GACGC | 3 cut(s) | 13, 39, 730 |
| Csp6I | GTAC | 1 cut(s) | 499 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 296, 331, 864, 899 |
| CviAII | CATG | 2 cut(s) | 388, 845 |
| CviQI | GTAC | 1 cut(s) | 499 |
| DdeI | CTNAG | 3 cut(s) | 240, 436, 762 |
| DinI | GGCGCC | 1 cut(s) | 938 |
| DpnI | GATC | 6 cut(s) | 17, 37, 150, 489, 698, 880 |
| DpnII | GATC | 6 cut(s) | 15, 35, 148, 487, 696, 878 |
| EaeI | YGGCCR | 1 cut(s) | 91 |
| Ecl136II | GAGCTC | 1 cut(s) | 814 |
| Eco130I | CCWWGG | 1 cut(s) | 377 |
| Eco24I | GRGCYC | 1 cut(s) | 816 |
| Eco31I | GGTCTC | 1 cut(s) | 544 |
| Eco53kI | GAGCTC | 1 cut(s) | 814 |
| Eco57I | CTGAAG | 2 cut(s) | 95, 141 |
| Eco88I | CYCGRG | 1 cut(s) | 371 |
| EcoICRI | GAGCTC | 1 cut(s) | 814 |
| EcoRII | CCWGG | 1 cut(s) | 195 |
| EcoT14I | CCWWGG | 1 cut(s) | 377 |
| EcoT38I | GRGCYC | 1 cut(s) | 816 |
| EgeI | GGCGCC | 1 cut(s) | 938 |
| EheI | GGCGCC | 1 cut(s) | 938 |
| ErhI | CCWWGG | 1 cut(s) | 377 |
| Esp3I | CGTCTC | 1 cut(s) | 748 |
| FaeI | CATG | 2 cut(s) | 391, 848 |
| FatI | CATG | 2 cut(s) | 387, 844 |
| FauNDI | CATATG | 1 cut(s) | 480 |
| FokI | GGATG | 5 cut(s) | 151, 155, 449, 497, 839 |
| FriOI | GRGCYC | 1 cut(s) | 816 |
| FspBI | CTAG | 6 cut(s) | 39, 303, 359, 378, 474, 590 |
| GlaI | GCGC | 2 cut(s) | 922, 938 |
| GsaI | CCCAGC | 2 cut(s) | 159, 226 |
| GsuI | CTGGAG | 1 cut(s) | 479 |
| HaeII | RGCGCY | 1 cut(s) | 940 |
| HaeIII | GGCC | 1 cut(s) | 93 |
| HapII | CCGG | 2 cut(s) | 8, 293 |
| HgaI | GACGC | 3 cut(s) | 13, 39, 730 |
| HhaI | GCGC | 2 cut(s) | 923, 939 |
| Hin1I | GRCGYC | 3 cut(s) | 5, 31, 937 |
| Hin1II | CATG | 2 cut(s) | 391, 848 |
| Hin6I | GCGC | 2 cut(s) | 921, 937 |
| HinP1I | GCGC | 2 cut(s) | 921, 937 |
| HincII | GTYRAC | 3 cut(s) | 286, 298, 308 |
| HindII | GTYRAC | 3 cut(s) | 286, 298, 308 |
| HindIII | AAGCTT | 1 cut(s) | 411 |
| HinfI | GANTC | 5 cut(s) | 354, 367, 724, 795, 905 |
| HpaII | CCGG | 2 cut(s) | 8, 293 |
| Hpy166II | GTNNAC | 4 cut(s) | 286, 298, 308, 331 |
| Hpy188I | TCNGA | 2 cut(s) | 255, 652 |
| Hpy188III | TCNNGA | 6 cut(s) | 19, 371, 584, 638, 876, 902 |
| Hpy8I | GTNNAC | 4 cut(s) | 286, 298, 308, 331 |
| Hpy99I | CGWCG | 2 cut(s) | 108, 111 |
| HpyAV | CCTTC | 1 cut(s) | 745 |
| HpyCH4III | ACNGT | 2 cut(s) | 111, 259 |
| HpyCH4IV | ACGT | 3 cut(s) | 247, 270, 564 |
| HpyCH4V | TGCA | 2 cut(s) | 749, 788 |
| HpyF3I | CTNAG | 3 cut(s) | 240, 436, 762 |
| HpySE526I | ACGT | 3 cut(s) | 247, 270, 564 |
| Hsp92I | GRCGYC | 3 cut(s) | 5, 31, 937 |
| Hsp92II | CATG | 2 cut(s) | 391, 848 |
| HspAI | GCGC | 2 cut(s) | 921, 937 |
| KasI | GGCGCC | 1 cut(s) | 936 |
| KspI | CCGCGG | 1 cut(s) | 230 |
| Kzo9I | GATC | 6 cut(s) | 15, 35, 148, 487, 696, 878 |
| LmnI | GCTCC | 3 cut(s) | 428, 498, 821 |
| Lsp1109I | GCAGC | 6 cut(s) | 171, 200, 203, 229, 251, 443 |
| LweI | GCATC | 2 cut(s) | 133, 346 |
| MaeI | CTAG | 6 cut(s) | 39, 303, 359, 378, 474, 590 |
| MaeII | ACGT | 3 cut(s) | 247, 270, 564 |
| MaeIII | GTNAC | 2 cut(s) | 569, 781 |
| MalI | GATC | 6 cut(s) | 17, 37, 150, 489, 698, 880 |
| MbiI | CCGCTC | 1 cut(s) | 493 |
| MboI | GATC | 6 cut(s) | 15, 35, 148, 487, 696, 878 |
| MboII | GAAGA | 6 cut(s) | 88, 134, 527, 530, 733, 874 |
| MflI | RGATCY | 1 cut(s) | 878 |
| MhlI | GDGCHC | 1 cut(s) | 816 |
| MlsI | TGGCCA | 1 cut(s) | 93 |
| MluCI | AATT | 4 cut(s) | 393, 680, 871, 910 |
| MluNI | TGGCCA | 1 cut(s) | 93 |
| Mly113I | GGCGCC | 1 cut(s) | 937 |
| MlyI | GAGTC | 1 cut(s) | 718 |
| MnlI | CCTC | 6 cut(s) | 17, 20, 300, 433, 620, 926 |
| Mox20I | TGGCCA | 1 cut(s) | 93 |
| MscI | TGGCCA | 1 cut(s) | 93 |
| MseI | TTAA | 3 cut(s) | 666, 674, 807 |
| MslI | CAYNNNNRTG | 3 cut(s) | 467, 483, 857 |
| Msp20I | TGGCCA | 1 cut(s) | 93 |
| MspA1I | CMGCKG | 2 cut(s) | 229, 264 |
| MspI | CCGG | 2 cut(s) | 8, 293 |
| MspR9I | CCNGG | 2 cut(s) | 9, 197 |
| MvaI | CCWGG | 1 cut(s) | 197 |
| MvnI | CGCG | 3 cut(s) | 229, 741, 921 |
| NarI | GGCGCC | 1 cut(s) | 937 |
| NciI | CCSGG | 1 cut(s) | 9 |
| NdeI | CATATG | 1 cut(s) | 480 |
| NdeII | GATC | 6 cut(s) | 15, 35, 148, 487, 696, 878 |
| NlaIII | CATG | 2 cut(s) | 391, 848 |
| NlaIV | GGNNCC | 1 cut(s) | 938 |
| NmuCI | GTSAC | 1 cut(s) | 569 |
| NspI | RCATGY | 1 cut(s) | 391 |
| PaeR7I | CTCGAG | 1 cut(s) | 371 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 319 |
| PfeI | GAWTC | 4 cut(s) | 354, 367, 795, 905 |
| PleI | GAGTC | 1 cut(s) | 718 |
| PluTI | GGCGCC | 1 cut(s) | 940 |
| PpsI | GAGTC | 1 cut(s) | 718 |
| PshAI | GACNNNNGTC | 1 cut(s) | 109 |
| Psp124BI | GAGCTC | 1 cut(s) | 816 |
| Psp6I | CCWGG | 1 cut(s) | 195 |
| PspFI | CCCAGC | 2 cut(s) | 155, 222 |
| PspGI | CCWGG | 1 cut(s) | 195 |
| PspN4I | GGNNCC | 1 cut(s) | 938 |
| PsuI | RGATCY | 1 cut(s) | 878 |
| PvuII | CAGCTG | 1 cut(s) | 264 |
| RsaI | GTAC | 1 cut(s) | 500 |
| RsaNI | GTAC | 1 cut(s) | 499 |
| RseI | CAYNNNNRTG | 3 cut(s) | 467, 483, 857 |
| SacI | GAGCTC | 1 cut(s) | 816 |
| SacII | CCGCGG | 1 cut(s) | 230 |
| SaqAI | TTAA | 3 cut(s) | 666, 674, 807 |
| Sau3AI | GATC | 6 cut(s) | 15, 35, 148, 487, 696, 878 |
| SchI | GAGTC | 1 cut(s) | 718 |
| ScrFI | CCNGG | 2 cut(s) | 9, 197 |
| SduI | GDGCHC | 1 cut(s) | 816 |
| SfaNI | GCATC | 2 cut(s) | 133, 346 |
| SfoI | GGCGCC | 1 cut(s) | 938 |
| Sfr274I | CTCGAG | 1 cut(s) | 371 |
| Sfr303I | CCGCGG | 1 cut(s) | 230 |
| SgrBI | CCGCGG | 1 cut(s) | 230 |
| SlaI | CTCGAG | 1 cut(s) | 371 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 467, 483, 857 |
| SmlI | CTYRAG | 2 cut(s) | 341, 371 |
| SmoI | CTYRAG | 2 cut(s) | 341, 371 |
| SpeI | ACTAGT | 1 cut(s) | 473 |
| Sse9I | AATT | 4 cut(s) | 393, 680, 871, 910 |
| SspDI | GGCGCC | 1 cut(s) | 936 |
| SspMI | CTAG | 6 cut(s) | 39, 303, 359, 378, 474, 590 |
| SstI | GAGCTC | 1 cut(s) | 816 |
| StyD4I | CCNGG | 2 cut(s) | 7, 195 |
| StyI | CCWWGG | 1 cut(s) | 377 |
| TaaI | ACNGT | 2 cut(s) | 111, 259 |
| TaiI | ACGT | 3 cut(s) | 250, 273, 567 |
| TaqI | TCGA | 4 cut(s) | 348, 372, 546, 777 |
| TaqII | GACCGA | 1 cut(s) | 271 |
| TasI | AATT | 4 cut(s) | 393, 680, 871, 910 |
| TatI | WGTACW | 1 cut(s) | 498 |
| TauI | GCSGC | 4 cut(s) | 60, 63, 211, 229 |
| TfiI | GAWTC | 4 cut(s) | 354, 367, 795, 905 |
| Tru1I | TTAA | 3 cut(s) | 666, 674, 807 |
| Tru9I | TTAA | 3 cut(s) | 666, 674, 807 |
| TseFI | GTSAC | 1 cut(s) | 569 |
| TseI | GCWGC | 6 cut(s) | 159, 188, 191, 217, 264, 431 |
| Tsp45I | GTSAC | 1 cut(s) | 569 |
| TspDTI | ATGAA | 4 cut(s) | 524, 528, 564, 842 |
| TspGWI | ACGGA | 1 cut(s) | 557 |
| XceI | RCATGY | 1 cut(s) | 391 |
| XhoI | CTCGAG | 1 cut(s) | 371 |
| XmaJI | CCTAGG | 1 cut(s) | 377 |
| XspI | CTAG | 6 cut(s) | 39, 303, 359, 378, 474, 590 |