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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 324 |
| AccB1I | GGYRCC | 1 cut(s) | 500 |
| AccBSI | CCGCTC | 1 cut(s) | 105 |
| AccII | CGCG | 3 cut(s) | 74, 249, 600 |
| AciI | CCGC | 5 cut(s) | 74, 93, 105, 150, 292 |
| AclI | AACGTT | 1 cut(s) | 243 |
| AclWI | GGATC | 1 cut(s) | 630 |
| AcoI | YGGCCR | 2 cut(s) | 127, 147 |
| AfaI | GTAC | 1 cut(s) | 315 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 19, 125, 193, 611 |
| AflII | CTTAAG | 1 cut(s) | 632 |
| AgsI | TTSAA | 1 cut(s) | 307 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 307 |
| AjnI | CCWGG | 1 cut(s) | 12 |
| AluBI | AGCT | 3 cut(s) | 335, 493, 515 |
| AluI | AGCT | 3 cut(s) | 335, 493, 515 |
| Alw21I | GWGCWC | 1 cut(s) | 495 |
| Alw26I | GTCTC | 2 cut(s) | 427, 636 |
| AlwI | GGATC | 1 cut(s) | 630 |
| AoxI | GGCC | 4 cut(s) | 28, 127, 147, 169 |
| ApeKI | GCWGC | 1 cut(s) | 229 |
| AspLEI | GCGC | 2 cut(s) | 74, 602 |
| AsuC2I | CCSGG | 1 cut(s) | 204 |
| AsuHPI | GGTGA | 1 cut(s) | 191 |
| AxyI | CCTNAGG | 1 cut(s) | 606 |
| BanI | GGYRCC | 1 cut(s) | 500 |
| BanII | GRGCYC | 2 cut(s) | 120, 495 |
| BbsI | GAAGAC | 2 cut(s) | 204, 407 |
| Bbv12I | GWGCWC | 1 cut(s) | 495 |
| BbvI | GCAGC | 1 cut(s) | 241 |
| BccI | CCATC | 1 cut(s) | 273 |
| BciT130I | CCWGG | 1 cut(s) | 14 |
| BcnI | CCSGG | 1 cut(s) | 204 |
| BcoDI | GTCTC | 2 cut(s) | 427, 636 |
| BfaI | CTAG | 2 cut(s) | 555, 660 |
| BfmI | CTRYAG | 1 cut(s) | 592 |
| BfrI | CTTAAG | 1 cut(s) | 632 |
| BisI | GCNGC | 3 cut(s) | 94, 150, 230 |
| BlsI | GCNGC | 3 cut(s) | 95, 151, 231 |
| Bme1390I | CCNGG | 2 cut(s) | 14, 204 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 307 |
| BmiI | GGNNCC | 2 cut(s) | 502, 568 |
| BmrFI | CCNGG | 2 cut(s) | 14, 204 |
| BpiI | GAAGAC | 2 cut(s) | 204, 407 |
| BpuEI | CTTGAG | 1 cut(s) | 245 |
| BpuMI | CCSGG | 1 cut(s) | 204 |
| BsaJI | CCNNGG | 4 cut(s) | 12, 13, 175, 202 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 18, 48 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 19, 125, 193, 611 |
| Bse118I | RCCGGY | 3 cut(s) | 125, 145, 167 |
| Bse21I | CCTNAGG | 1 cut(s) | 606 |
| BseBI | CCWGG | 1 cut(s) | 14 |
| BseDI | CCNNGG | 4 cut(s) | 12, 13, 175, 202 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 19, 125, 193, 611 |
| BseRI | GAGGAG | 1 cut(s) | 59 |
| BseX3I | CGGCCG | 2 cut(s) | 127, 147 |
| BseXI | GCAGC | 1 cut(s) | 241 |
| Bsh1236I | CGCG | 3 cut(s) | 74, 249, 600 |
| Bsh1285I | CGRYCG | 2 cut(s) | 130, 150 |
| BshFI | GGCC | 4 cut(s) | 30, 129, 149, 171 |
| BshNI | GGYRCC | 1 cut(s) | 500 |
| BsiEI | CGRYCG | 2 cut(s) | 130, 150 |
| BsiHKAI | GWGCWC | 1 cut(s) | 495 |
| BsiSI | CCGG | 4 cut(s) | 126, 146, 168, 204 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 19, 125, 193, 611 |
| BsmAI | GTCTC | 2 cut(s) | 427, 636 |
| BsmBI | CGTCTC | 1 cut(s) | 427 |
| BsmI | GAATGC | 1 cut(s) | 469 |
| BsnI | GGCC | 4 cut(s) | 30, 129, 149, 171 |
| Bsp1286I | GDGCHC | 2 cut(s) | 120, 495 |
| Bsp143I | GATC | 2 cut(s) | 435, 622 |
| Bsp68I | TCGCGA | 1 cut(s) | 249 |
| BspACI | CCGC | 5 cut(s) | 74, 93, 105, 150, 292 |
| BspANI | GGCC | 4 cut(s) | 30, 129, 149, 171 |
| BspFNI | CGCG | 3 cut(s) | 74, 249, 600 |
| BspHI | TCATGA | 1 cut(s) | 487 |
| BspLI | GGNNCC | 2 cut(s) | 502, 568 |
| BspPI | GGATC | 1 cut(s) | 630 |
| BspT107I | GGYRCC | 1 cut(s) | 500 |
| BspTI | CTTAAG | 1 cut(s) | 632 |
| BsrBI | CCGCTC | 1 cut(s) | 105 |
| BsrFI | RCCGGY | 3 cut(s) | 125, 145, 167 |
| BssAI | RCCGGY | 3 cut(s) | 125, 145, 167 |
| BssECI | CCNNGG | 4 cut(s) | 12, 13, 175, 202 |
| BssMI | GATC | 2 cut(s) | 435, 622 |
| BssT1I | CCWWGG | 1 cut(s) | 175 |
| Bst2UI | CCWGG | 1 cut(s) | 14 |
| BstAFI | CTTAAG | 1 cut(s) | 632 |
| BstDEI | CTNAG | 4 cut(s) | 2, 338, 516, 606 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 17, 191, 609 |
| BstFNI | CGCG | 3 cut(s) | 74, 249, 600 |
| BstHHI | GCGC | 2 cut(s) | 74, 602 |
| BstKTI | GATC | 2 cut(s) | 438, 625 |
| BstMAI | GTCTC | 2 cut(s) | 427, 636 |
| BstMBI | GATC | 2 cut(s) | 435, 622 |
| BstMCI | CGRYCG | 2 cut(s) | 130, 150 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 102, 246 |
| BstNI | CCWGG | 1 cut(s) | 14 |
| BstSCI | CCNGG | 2 cut(s) | 12, 202 |
| BstSFI | CTRYAG | 1 cut(s) | 592 |
| BstUI | CGCG | 3 cut(s) | 74, 249, 600 |
| BstV1I | GCAGC | 1 cut(s) | 241 |
| BstV2I | GAAGAC | 2 cut(s) | 204, 407 |
| BstZI | CGGCCG | 2 cut(s) | 127, 147 |
| Bsu36I | CCTNAGG | 1 cut(s) | 606 |
| BsuRI | GGCC | 4 cut(s) | 30, 129, 149, 171 |
| BtuMI | TCGCGA | 1 cut(s) | 249 |
| CciI | TCATGA | 1 cut(s) | 487 |
| CfoI | GCGC | 2 cut(s) | 74, 602 |
| Cfr10I | RCCGGY | 3 cut(s) | 125, 145, 167 |
| CseI | GACGC | 2 cut(s) | 606, 624 |
| Csp6I | GTAC | 1 cut(s) | 314 |
| CviAII | CATG | 2 cut(s) | 488, 505 |
| CviQI | GTAC | 1 cut(s) | 314 |
| DdeI | CTNAG | 4 cut(s) | 2, 338, 516, 606 |
| DpnI | GATC | 2 cut(s) | 437, 624 |
| DpnII | GATC | 2 cut(s) | 435, 622 |
| DriI | GACNNNNNGTC | 1 cut(s) | 307 |
| EaeI | YGGCCR | 2 cut(s) | 127, 147 |
| EagI | CGGCCG | 2 cut(s) | 127, 147 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 307 |
| Ecl136II | GAGCTC | 1 cut(s) | 493 |
| EclXI | CGGCCG | 2 cut(s) | 127, 147 |
| Eco130I | CCWWGG | 1 cut(s) | 175 |
| Eco24I | GRGCYC | 2 cut(s) | 120, 495 |
| Eco52I | CGGCCG | 2 cut(s) | 127, 147 |
| Eco53kI | GAGCTC | 1 cut(s) | 493 |
| Eco81I | CCTNAGG | 1 cut(s) | 606 |
| EcoICRI | GAGCTC | 1 cut(s) | 493 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 17, 191, 609 |
| EcoRII | CCWGG | 1 cut(s) | 12 |
| EcoT14I | CCWWGG | 1 cut(s) | 175 |
| EcoT38I | GRGCYC | 2 cut(s) | 120, 495 |
| ErhI | CCWWGG | 1 cut(s) | 175 |
| Esp3I | CGTCTC | 1 cut(s) | 427 |
| FaeI | CATG | 2 cut(s) | 491, 508 |
| FaiI | YATR | 9 cut(s) | 214, 285, 324, 377, 389, 489, 506, 549, 594 |
| FatI | CATG | 2 cut(s) | 487, 504 |
| Fnu4HI | GCNGC | 3 cut(s) | 94, 150, 230 |
| FriOI | GRGCYC | 2 cut(s) | 120, 495 |
| Fsp4HI | GCNGC | 3 cut(s) | 94, 150, 230 |
| FspBI | CTAG | 2 cut(s) | 555, 660 |
| GlaI | GCGC | 2 cut(s) | 73, 601 |
| GluI | GCNGC | 3 cut(s) | 94, 150, 230 |
| HaeIII | GGCC | 4 cut(s) | 30, 129, 149, 171 |
| HapII | CCGG | 4 cut(s) | 126, 146, 168, 204 |
| HgaI | GACGC | 2 cut(s) | 606, 624 |
| HhaI | GCGC | 2 cut(s) | 74, 602 |
| Hin1II | CATG | 2 cut(s) | 491, 508 |
| Hin6I | GCGC | 2 cut(s) | 72, 600 |
| HinP1I | GCGC | 2 cut(s) | 72, 600 |
| HinfI | GANTC | 5 cut(s) | 98, 108, 251, 403, 584 |
| HpaII | CCGG | 4 cut(s) | 126, 146, 168, 204 |
| HphI | GGTGA | 1 cut(s) | 191 |
| Hpy188I | TCNGA | 3 cut(s) | 331, 453, 652 |
| Hpy188III | TCNNGA | 5 cut(s) | 248, 263, 397, 488, 581 |
| HpyAV | CCTTC | 2 cut(s) | 17, 424 |
| HpyCH4IV | ACGT | 3 cut(s) | 243, 472, 510 |
| HpyCH4V | TGCA | 1 cut(s) | 467 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 102, 246 |
| HpyF3I | CTNAG | 4 cut(s) | 2, 338, 516, 606 |
| HpySE526I | ACGT | 3 cut(s) | 243, 472, 510 |
| Hsp92II | CATG | 2 cut(s) | 491, 508 |
| HspAI | GCGC | 2 cut(s) | 72, 600 |
| Kzo9I | GATC | 2 cut(s) | 435, 622 |
| Lsp1109I | GCAGC | 1 cut(s) | 241 |
| MaeI | CTAG | 2 cut(s) | 555, 660 |
| MaeII | ACGT | 3 cut(s) | 243, 472, 510 |
| MaeIII | GTNAC | 3 cut(s) | 38, 158, 299 |
| MalI | GATC | 2 cut(s) | 437, 624 |
| MbiI | CCGCTC | 1 cut(s) | 105 |
| MboI | GATC | 2 cut(s) | 435, 622 |
| MboII | GAAGA | 3 cut(s) | 209, 412, 553 |
| MhlI | GDGCHC | 2 cut(s) | 120, 495 |
| MluCI | AATT | 2 cut(s) | 445, 646 |
| MlyI | GAGTC | 5 cut(s) | 107, 117, 245, 397, 593 |
| MseI | TTAA | 3 cut(s) | 353, 392, 633 |
| MspCI | CTTAAG | 1 cut(s) | 632 |
| MspI | CCGG | 4 cut(s) | 126, 146, 168, 204 |
| MspR9I | CCNGG | 2 cut(s) | 14, 204 |
| Mva1269I | GAATGC | 1 cut(s) | 469 |
| MvaI | CCWGG | 1 cut(s) | 14 |
| MvnI | CGCG | 3 cut(s) | 74, 249, 600 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 102, 246 |
| NciI | CCSGG | 1 cut(s) | 204 |
| NdeII | GATC | 2 cut(s) | 435, 622 |
| NlaIII | CATG | 2 cut(s) | 491, 508 |
| NlaIV | GGNNCC | 2 cut(s) | 502, 568 |
| NmeAIII | GCCGAG | 1 cut(s) | 56 |
| NmuCI | GTSAC | 3 cut(s) | 38, 158, 299 |
| NruI | TCGCGA | 1 cut(s) | 249 |
| PagI | TCATGA | 1 cut(s) | 487 |
| PasI | CCCWGGG | 1 cut(s) | 13 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 622 |
| PctI | GAATGC | 1 cut(s) | 469 |
| PkrI | GCNGC | 3 cut(s) | 95, 151, 231 |
| PleI | GAGTC | 5 cut(s) | 106, 116, 245, 397, 592 |
| PpsI | GAGTC | 5 cut(s) | 106, 116, 245, 397, 592 |
| PsiI | TTATAA | 1 cut(s) | 324 |
| Psp124BI | GAGCTC | 1 cut(s) | 495 |
| Psp1406I | AACGTT | 1 cut(s) | 243 |
| Psp6I | CCWGG | 1 cut(s) | 12 |
| PspGI | CCWGG | 1 cut(s) | 12 |
| PspN4I | GGNNCC | 2 cut(s) | 502, 568 |
| RruI | TCGCGA | 1 cut(s) | 249 |
| RsaI | GTAC | 1 cut(s) | 315 |
| RsaNI | GTAC | 1 cut(s) | 314 |
| SacI | GAGCTC | 1 cut(s) | 495 |
| SaqAI | TTAA | 3 cut(s) | 353, 392, 633 |
| SatI | GCNGC | 3 cut(s) | 94, 150, 230 |
| Sau3AI | GATC | 2 cut(s) | 435, 622 |
| SchI | GAGTC | 5 cut(s) | 107, 117, 245, 397, 593 |
| ScrFI | CCNGG | 2 cut(s) | 14, 204 |
| SduI | GDGCHC | 2 cut(s) | 120, 495 |
| SfcI | CTRYAG | 1 cut(s) | 592 |
| SmlI | CTYRAG | 2 cut(s) | 224, 632 |
| SmoI | CTYRAG | 2 cut(s) | 224, 632 |
| Sse9I | AATT | 2 cut(s) | 445, 646 |
| SsiI | CCGC | 5 cut(s) | 74, 93, 105, 150, 292 |
| SspMI | CTAG | 2 cut(s) | 555, 660 |
| SstI | GAGCTC | 1 cut(s) | 495 |
| StyD4I | CCNGG | 2 cut(s) | 12, 202 |
| StyI | CCWWGG | 1 cut(s) | 175 |
| TaiI | ACGT | 3 cut(s) | 246, 475, 513 |
| TaqI | TCGA | 4 cut(s) | 101, 114, 396, 625 |
| TasI | AATT | 2 cut(s) | 445, 646 |
| TatI | WGTACW | 1 cut(s) | 313 |
| TauI | GCSGC | 2 cut(s) | 96, 152 |
| Tru1I | TTAA | 3 cut(s) | 353, 392, 633 |
| Tru9I | TTAA | 3 cut(s) | 353, 392, 633 |
| TseFI | GTSAC | 3 cut(s) | 38, 158, 299 |
| TseI | GCWGC | 1 cut(s) | 229 |
| Tsp45I | GTSAC | 3 cut(s) | 38, 158, 299 |
| TspDTI | ATGAA | 2 cut(s) | 476, 521 |
| Vha464I | CTTAAG | 1 cut(s) | 632 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 17, 191, 609 |
| XspI | CTAG | 2 cut(s) | 555, 660 |