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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 408 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 756 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 787, 925 |
| AccBSI | CCGCTC | 1 cut(s) | 1027 |
| AccI | GTMKAC | 1 cut(s) | 748 |
| AciI | CCGC | 2 cut(s) | 203, 1025 |
| AclWI | GGATC | 3 cut(s) | 39, 434, 646 |
| AcsI | RAATTY | 2 cut(s) | 70, 1089 |
| AcuI | CTGAAG | 1 cut(s) | 675 |
| AfaI | GTAC | 1 cut(s) | 269 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 26, 127, 423, 787, 925 |
| AflIII | ACRYGT | 1 cut(s) | 958 |
| AgsI | TTSAA | 5 cut(s) | 61, 259, 383, 482, 949 |
| AhlI | ACTAGT | 1 cut(s) | 674 |
| AjiI | CACGTC | 2 cut(s) | 695, 737 |
| AjnI | CCWGG | 1 cut(s) | 19 |
| AluBI | AGCT | 6 cut(s) | 8, 215, 295, 604, 764, 941 |
| AluI | AGCT | 6 cut(s) | 8, 215, 295, 604, 764, 941 |
| Alw21I | GWGCWC | 3 cut(s) | 345, 355, 606 |
| Alw26I | GTCTC | 3 cut(s) | 630, 959, 1039 |
| AlwI | GGATC | 3 cut(s) | 39, 434, 646 |
| AoxI | GGCC | 6 cut(s) | 129, 170, 468, 790, 886, 927 |
| ApaI | GGGCCC | 2 cut(s) | 133, 794 |
| ApeKI | GCWGC | 1 cut(s) | 526 |
| ApoI | RAATTY | 2 cut(s) | 70, 1089 |
| AspLEI | GCGC | 1 cut(s) | 378 |
| AspS9I | GGNCC | 6 cut(s) | 129, 130, 170, 790, 791, 928 |
| AsuHPI | GGTGA | 4 cut(s) | 9, 317, 421, 541 |
| BaeGI | GKGCMC | 2 cut(s) | 133, 794 |
| BanII | GRGCYC | 4 cut(s) | 133, 606, 794, 898 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 251, 283 |
| BauI | CACGAG | 1 cut(s) | 765 |
| BbsI | GAAGAC | 3 cut(s) | 569, 861, 921 |
| Bbv12I | GWGCWC | 3 cut(s) | 345, 355, 606 |
| BbvI | GCAGC | 1 cut(s) | 538 |
| BccI | CCATC | 4 cut(s) | 179, 249, 255, 627 |
| BciT130I | CCWGG | 1 cut(s) | 21 |
| BclI | TGATCA | 1 cut(s) | 834 |
| BcoDI | GTCTC | 3 cut(s) | 630, 959, 1039 |
| BcuI | ACTAGT | 1 cut(s) | 674 |
| BfaI | CTAG | 3 cut(s) | 348, 675, 1105 |
| BfmI | CTRYAG | 2 cut(s) | 633, 1011 |
| BisI | GCNGC | 1 cut(s) | 527 |
| BlpI | GCTNAGC | 1 cut(s) | 588 |
| BlsI | GCNGC | 1 cut(s) | 528 |
| BmcAI | AGTACT | 1 cut(s) | 269 |
| Bme1390I | CCNGG | 1 cut(s) | 21 |
| BmgBI | CACGTC | 2 cut(s) | 695, 737 |
| BmgT120I | GGNCC | 6 cut(s) | 129, 130, 170, 790, 791, 928 |
| BmiI | GGNNCC | 2 cut(s) | 131, 792 |
| BmrFI | CCNGG | 1 cut(s) | 21 |
| BmsI | GCATC | 3 cut(s) | 127, 379, 465 |
| BpiI | GAAGAC | 3 cut(s) | 569, 861, 921 |
| Bpu10I | CCTNAGC | 1 cut(s) | 216 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 588 |
| BpuEI | CTTGAG | 1 cut(s) | 311 |
| BsaJI | CCNNGG | 5 cut(s) | 20, 166, 724, 794, 992 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 444, 474 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 26, 127, 423, 787, 925 |
| Bse1I | ACTGG | 1 cut(s) | 1080 |
| BseBI | CCWGG | 1 cut(s) | 21 |
| BseDI | CCNNGG | 5 cut(s) | 20, 166, 724, 794, 992 |
| BseGI | GGATG | 2 cut(s) | 43, 190 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 26, 127, 423, 787, 925 |
| BseMII | CTCAG | 5 cut(s) | 207, 479, 579, 996, 1050 |
| BseNI | ACTGG | 1 cut(s) | 1080 |
| BseSI | GKGCMC | 2 cut(s) | 133, 794 |
| BseXI | GCAGC | 1 cut(s) | 538 |
| BseYI | CCCAGC | 1 cut(s) | 26 |
| BsgI | GTGCAG | 1 cut(s) | 930 |
| BshFI | GGCC | 6 cut(s) | 131, 172, 470, 792, 888, 929 |
| BsiHKAI | GWGCWC | 3 cut(s) | 345, 355, 606 |
| BslFI | GGGAC | 1 cut(s) | 184 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 26, 127, 423, 787, 925 |
| BsmAI | GTCTC | 3 cut(s) | 630, 959, 1039 |
| BsmFI | GGGAC | 1 cut(s) | 184 |
| BsmI | GAATGC | 1 cut(s) | 667 |
| BsnI | GGCC | 6 cut(s) | 131, 172, 470, 792, 888, 929 |
| Bsp120I | GGGCCC | 2 cut(s) | 129, 790 |
| Bsp1286I | GDGCHC | 6 cut(s) | 133, 345, 355, 606, 794, 898 |
| Bsp143I | GATC | 5 cut(s) | 31, 426, 562, 638, 834 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 588 |
| BspACI | CCGC | 2 cut(s) | 203, 1025 |
| BspANI | GGCC | 6 cut(s) | 131, 172, 470, 792, 888, 929 |
| BspCNI | CTCAG | 5 cut(s) | 206, 478, 580, 997, 1049 |
| BspLI | GGNNCC | 2 cut(s) | 131, 792 |
| BspPI | GGATC | 3 cut(s) | 39, 434, 646 |
| BsrBI | CCGCTC | 1 cut(s) | 1027 |
| BsrI | ACTGG | 1 cut(s) | 1080 |
| BssECI | CCNNGG | 5 cut(s) | 20, 166, 724, 794, 992 |
| BssMI | GATC | 5 cut(s) | 31, 426, 562, 638, 834 |
| BssSI | CACGAG | 1 cut(s) | 765 |
| BssT1I | CCWWGG | 3 cut(s) | 166, 794, 992 |
| Bst2BI | CACGAG | 1 cut(s) | 765 |
| Bst2UI | CCWGG | 1 cut(s) | 21 |
| Bst4CI | ACNGT | 7 cut(s) | 44, 277, 337, 392, 460, 725, 860 |
| BstC8I | GCNNGC | 1 cut(s) | 898 |
| BstDEI | CTNAG | 7 cut(s) | 193, 216, 465, 588, 869, 1005, 1036 |
| BstDSI | CCRYGG | 1 cut(s) | 724 |
| BstF5I | GGATG | 2 cut(s) | 43, 190 |
| BstHHI | GCGC | 1 cut(s) | 378 |
| BstKTI | GATC | 5 cut(s) | 34, 429, 565, 641, 837 |
| BstMAI | GTCTC | 3 cut(s) | 630, 959, 1039 |
| BstMBI | GATC | 5 cut(s) | 31, 426, 562, 638, 834 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 137 |
| BstNI | CCWGG | 1 cut(s) | 21 |
| BstNSI | RCATGY | 1 cut(s) | 962 |
| BstSCI | CCNGG | 1 cut(s) | 19 |
| BstSFI | CTRYAG | 2 cut(s) | 633, 1011 |
| BstSLI | GKGCMC | 2 cut(s) | 133, 794 |
| BstV1I | GCAGC | 1 cut(s) | 538 |
| BstV2I | GAAGAC | 3 cut(s) | 569, 861, 921 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 167 |
| BsuRI | GGCC | 6 cut(s) | 131, 172, 470, 792, 888, 929 |
| BtgI | CCRYGG | 1 cut(s) | 724 |
| BtrI | CACGTC | 2 cut(s) | 695, 737 |
| BtsCI | GGATG | 2 cut(s) | 43, 190 |
| BtsIMutI | CAGTG | 2 cut(s) | 865, 1087 |
| Cac8I | GCNNGC | 1 cut(s) | 898 |
| CfoI | GCGC | 1 cut(s) | 378 |
| Cfr13I | GGNCC | 6 cut(s) | 129, 130, 170, 790, 791, 928 |
| CseI | GACGC | 2 cut(s) | 186, 376 |
| Csp6I | GTAC | 1 cut(s) | 268 |
| CviAII | CATG | 6 cut(s) | 418, 472, 503, 683, 707, 959 |
| CviQI | GTAC | 1 cut(s) | 268 |
| DdeI | CTNAG | 7 cut(s) | 193, 216, 465, 588, 869, 1005, 1036 |
| DpnI | GATC | 5 cut(s) | 33, 428, 564, 640, 836 |
| DpnII | GATC | 5 cut(s) | 31, 426, 562, 638, 834 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 756 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 756 |
| Ecl136II | GAGCTC | 1 cut(s) | 604 |
| Eco130I | CCWWGG | 3 cut(s) | 166, 794, 992 |
| Eco24I | GRGCYC | 4 cut(s) | 133, 606, 794, 898 |
| Eco53kI | GAGCTC | 1 cut(s) | 604 |
| Eco57I | CTGAAG | 1 cut(s) | 675 |
| EcoICRI | GAGCTC | 1 cut(s) | 604 |
| EcoO109I | RGGNCCY | 1 cut(s) | 130 |
| EcoRI | GAATTC | 1 cut(s) | 1089 |
| EcoRII | CCWGG | 1 cut(s) | 19 |
| EcoT14I | CCWWGG | 3 cut(s) | 166, 794, 992 |
| EcoT38I | GRGCYC | 4 cut(s) | 133, 606, 794, 898 |
| ErhI | CCWWGG | 3 cut(s) | 166, 794, 992 |
| FaeI | CATG | 6 cut(s) | 421, 475, 506, 686, 710, 962 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 273, 305 |
| FaqI | GGGAC | 1 cut(s) | 184 |
| FatI | CATG | 6 cut(s) | 417, 471, 502, 682, 706, 958 |
| FauI | CCCGC | 1 cut(s) | 210 |
| FbaI | TGATCA | 1 cut(s) | 834 |
| FblI | GTMKAC | 1 cut(s) | 748 |
| Fnu4HI | GCNGC | 1 cut(s) | 527 |
| FokI | GGATG | 2 cut(s) | 50, 197 |
| FriOI | GRGCYC | 4 cut(s) | 133, 606, 794, 898 |
| Fsp4HI | GCNGC | 1 cut(s) | 527 |
| FspBI | CTAG | 3 cut(s) | 348, 675, 1105 |
| GlaI | GCGC | 1 cut(s) | 377 |
| GluI | GCNGC | 1 cut(s) | 527 |
| GsaI | CCCAGC | 1 cut(s) | 30 |
| HaeIII | GGCC | 6 cut(s) | 131, 172, 470, 792, 888, 929 |
| HgaI | GACGC | 2 cut(s) | 186, 376 |
| HhaI | GCGC | 1 cut(s) | 378 |
| Hin1II | CATG | 6 cut(s) | 421, 475, 506, 686, 710, 962 |
| Hin6I | GCGC | 1 cut(s) | 376 |
| HinP1I | GCGC | 1 cut(s) | 376 |
| HincII | GTYRAC | 1 cut(s) | 749 |
| HindII | GTYRAC | 1 cut(s) | 749 |
| HindIII | AAGCTT | 1 cut(s) | 939 |
| HinfI | GANTC | 5 cut(s) | 12, 145, 442, 546, 998 |
| HphI | GGTGA | 4 cut(s) | 9, 317, 421, 541 |
| Hpy166II | GTNNAC | 1 cut(s) | 749 |
| Hpy188I | TCNGA | 5 cut(s) | 562, 831, 988, 1006, 1039 |
| Hpy188III | TCNNGA | 6 cut(s) | 35, 58, 152, 383, 424, 1094 |
| Hpy8I | GTNNAC | 1 cut(s) | 749 |
| HpyAV | CCTTC | 4 cut(s) | 253, 389, 499, 696 |
| HpyCH4III | ACNGT | 7 cut(s) | 44, 277, 337, 392, 460, 725, 860 |
| HpyCH4IV | ACGT | 3 cut(s) | 355, 694, 736 |
| HpyCH4V | TGCA | 1 cut(s) | 911 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 137 |
| HpyF3I | CTNAG | 7 cut(s) | 193, 216, 465, 588, 869, 1005, 1036 |
| HpySE526I | ACGT | 3 cut(s) | 355, 694, 736 |
| Hsp92II | CATG | 6 cut(s) | 421, 475, 506, 686, 710, 962 |
| HspAI | GCGC | 1 cut(s) | 376 |
| Ksp22I | TGATCA | 1 cut(s) | 834 |
| Kzo9I | GATC | 5 cut(s) | 31, 426, 562, 638, 834 |
| LmnI | GCTCC | 1 cut(s) | 348 |
| Lsp1109I | GCAGC | 1 cut(s) | 538 |
| LweI | GCATC | 3 cut(s) | 127, 379, 465 |
| MaeI | CTAG | 3 cut(s) | 348, 675, 1105 |
| MaeII | ACGT | 3 cut(s) | 355, 694, 736 |
| MaeIII | GTNAC | 2 cut(s) | 460, 719 |
| MalI | GATC | 5 cut(s) | 33, 428, 564, 640, 836 |
| MbiI | CCGCTC | 1 cut(s) | 1027 |
| MboI | GATC | 5 cut(s) | 31, 426, 562, 638, 834 |
| MboII | GAAGA | 5 cut(s) | 73, 569, 625, 866, 926 |
| MhlI | GDGCHC | 6 cut(s) | 133, 345, 355, 606, 794, 898 |
| MluCI | AATT | 5 cut(s) | 70, 80, 409, 1063, 1089 |
| MnlI | CCTC | 5 cut(s) | 442, 517, 536, 852, 941 |
| MseI | TTAA | 2 cut(s) | 272, 608 |
| MslI | CAYNNNNRTG | 2 cut(s) | 735, 849 |
| MspR9I | CCNGG | 1 cut(s) | 21 |
| Mva1269I | GAATGC | 1 cut(s) | 667 |
| MvaI | CCWGG | 1 cut(s) | 21 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 137 |
| NdeII | GATC | 5 cut(s) | 31, 426, 562, 638, 834 |
| NlaIII | CATG | 6 cut(s) | 421, 475, 506, 686, 710, 962 |
| NlaIV | GGNNCC | 2 cut(s) | 131, 792 |
| NmeAIII | GCCGAG | 1 cut(s) | 166 |
| NspI | RCATGY | 1 cut(s) | 962 |
| PciI | ACATGT | 1 cut(s) | 958 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 904 |
| PctI | GAATGC | 1 cut(s) | 667 |
| PfeI | GAWTC | 5 cut(s) | 12, 145, 442, 546, 998 |
| PflFI | GACNNNGTC | 1 cut(s) | 44 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 787, 925 |
| PkrI | GCNGC | 1 cut(s) | 528 |
| PscI | ACATGT | 1 cut(s) | 958 |
| PsiI | TTATAA | 1 cut(s) | 408 |
| Psp124BI | GAGCTC | 1 cut(s) | 606 |
| Psp6I | CCWGG | 1 cut(s) | 19 |
| PspFI | CCCAGC | 1 cut(s) | 26 |
| PspGI | CCWGG | 1 cut(s) | 19 |
| PspN4I | GGNNCC | 2 cut(s) | 131, 792 |
| PspOMI | GGGCCC | 2 cut(s) | 129, 790 |
| PspPI | GGNCC | 6 cut(s) | 129, 130, 170, 790, 791, 928 |
| PsyI | GACNNNGTC | 1 cut(s) | 44 |
| RsaI | GTAC | 1 cut(s) | 269 |
| RsaNI | GTAC | 1 cut(s) | 268 |
| RseI | CAYNNNNRTG | 2 cut(s) | 735, 849 |
| SacI | GAGCTC | 1 cut(s) | 606 |
| SalI | GTCGAC | 1 cut(s) | 747 |
| SaqAI | TTAA | 2 cut(s) | 272, 608 |
| SatI | GCNGC | 1 cut(s) | 527 |
| Sau3AI | GATC | 5 cut(s) | 31, 426, 562, 638, 834 |
| Sau96I | GGNCC | 6 cut(s) | 129, 130, 170, 790, 791, 928 |
| ScaI | AGTACT | 1 cut(s) | 269 |
| ScrFI | CCNGG | 1 cut(s) | 21 |
| SduI | GDGCHC | 6 cut(s) | 133, 345, 355, 606, 794, 898 |
| SfaNI | GCATC | 3 cut(s) | 127, 379, 465 |
| SfcI | CTRYAG | 2 cut(s) | 633, 1011 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 735, 849 |
| SmlI | CTYRAG | 1 cut(s) | 290 |
| SmoI | CTYRAG | 1 cut(s) | 290 |
| SpeI | ACTAGT | 1 cut(s) | 674 |
| Sse9I | AATT | 5 cut(s) | 70, 80, 409, 1063, 1089 |
| SsiI | CCGC | 2 cut(s) | 203, 1025 |
| SspI | AATATT | 1 cut(s) | 557 |
| SspMI | CTAG | 3 cut(s) | 348, 675, 1105 |
| SstI | GAGCTC | 1 cut(s) | 606 |
| StyD4I | CCNGG | 1 cut(s) | 19 |
| StyI | CCWWGG | 3 cut(s) | 166, 794, 992 |
| TaaI | ACNGT | 7 cut(s) | 44, 277, 337, 392, 460, 725, 860 |
| TaiI | ACGT | 3 cut(s) | 358, 697, 739 |
| TaqI | TCGA | 3 cut(s) | 153, 748, 1029 |
| TasI | AATT | 5 cut(s) | 70, 80, 409, 1063, 1089 |
| TatI | WGTACW | 1 cut(s) | 267 |
| TfiI | GAWTC | 5 cut(s) | 12, 145, 442, 546, 998 |
| Tru1I | TTAA | 2 cut(s) | 272, 608 |
| Tru9I | TTAA | 2 cut(s) | 272, 608 |
| TscAI | CASTG | 2 cut(s) | 865, 1087 |
| TseI | GCWGC | 1 cut(s) | 526 |
| TspDTI | ATGAA | 7 cut(s) | 137, 375, 455, 491, 626, 867, 990 |
| TspRI | CASTG | 2 cut(s) | 865, 1087 |
| Tth111I | GACNNNGTC | 1 cut(s) | 44 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 787, 925 |
| XapI | RAATTY | 2 cut(s) | 70, 1089 |
| XceI | RCATGY | 1 cut(s) | 962 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 294 |
| XmiI | GTMKAC | 1 cut(s) | 748 |
| XspI | CTAG | 3 cut(s) | 348, 675, 1105 |
| ZrmI | AGTACT | 1 cut(s) | 269 |