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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 696, 741 |
| AarI | CACCTGC | 1 cut(s) | 210 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 804 |
| Acc16I | TGCGCA | 1 cut(s) | 1061 |
| Acc36I | ACCTGC | 2 cut(s) | 92, 210 |
| AccBSI | CCGCTC | 2 cut(s) | 70, 851 |
| AccII | CGCG | 1 cut(s) | 58 |
| AciI | CCGC | 6 cut(s) | 56, 68, 105, 141, 197, 851 |
| AclWI | GGATC | 1 cut(s) | 896 |
| AcuI | CTGAAG | 3 cut(s) | 186, 414, 1068 |
| AcvI | CACGTG | 1 cut(s) | 877 |
| AcyI | GRCGYC | 1 cut(s) | 481 |
| AdeI | CACNNNGTG | 1 cut(s) | 982 |
| AfaI | GTAC | 1 cut(s) | 986 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 755, 756, 826 |
| AflIII | ACRYGT | 1 cut(s) | 874 |
| AgsI | TTSAA | 4 cut(s) | 702, 913, 945, 1042 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 584 |
| AleI | CACNNNNGTG | 1 cut(s) | 385 |
| AluBI | AGCT | 6 cut(s) | 170, 538, 601, 816, 941, 1046 |
| AluI | AGCT | 6 cut(s) | 170, 538, 601, 816, 941, 1046 |
| Alw21I | GWGCWC | 2 cut(s) | 99, 978 |
| Alw26I | GTCTC | 1 cut(s) | 1008 |
| AlwI | GGATC | 1 cut(s) | 896 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 191 |
| AoxI | GGCC | 2 cut(s) | 316, 924 |
| ApeKI | GCWGC | 8 cut(s) | 11, 60, 111, 118, 170, 173, 816, 1070 |
| AspA2I | CCTAGG | 1 cut(s) | 776 |
| AspLEI | GCGC | 2 cut(s) | 60, 1062 |
| AspS9I | GGNCC | 4 cut(s) | 311, 317, 806, 964 |
| AsuC2I | CCSGG | 1 cut(s) | 315 |
| AsuHPI | GGTGA | 1 cut(s) | 1018 |
| AvaII | GGWCC | 3 cut(s) | 311, 806, 964 |
| AvrII | CCTAGG | 1 cut(s) | 776 |
| AxyI | CCTNAGG | 1 cut(s) | 968 |
| BaeGI | GKGCMC | 1 cut(s) | 762 |
| BanII | GRGCYC | 1 cut(s) | 547 |
| BauI | CACGAG | 1 cut(s) | 683 |
| BbrPI | CACGTG | 1 cut(s) | 877 |
| BbsI | GAAGAC | 2 cut(s) | 252, 617 |
| Bbv12I | GWGCWC | 2 cut(s) | 99, 978 |
| BbvI | GCAGC | 8 cut(s) | 23, 47, 123, 130, 157, 160, 803, 1057 |
| BcnI | CCSGG | 1 cut(s) | 315 |
| BcoDI | GTCTC | 1 cut(s) | 1008 |
| BfaI | CTAG | 3 cut(s) | 152, 777, 938 |
| BfmI | CTRYAG | 5 cut(s) | 27, 109, 116, 203, 1071 |
| BfuAI | ACCTGC | 2 cut(s) | 92, 210 |
| BglII | AGATCT | 1 cut(s) | 424 |
| BisI | GCNGC | 8 cut(s) | 12, 61, 112, 119, 171, 174, 817, 1071 |
| BlnI | CCTAGG | 1 cut(s) | 776 |
| BlsI | GCNGC | 8 cut(s) | 13, 62, 113, 120, 172, 175, 818, 1072 |
| Bme1390I | CCNGG | 1 cut(s) | 315 |
| Bme18I | GGWCC | 3 cut(s) | 311, 806, 964 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 584 |
| BmgT120I | GGNCC | 4 cut(s) | 311, 317, 806, 964 |
| BmiI | GGNNCC | 4 cut(s) | 312, 313, 807, 965 |
| BmrFI | CCNGG | 1 cut(s) | 315 |
| BmsI | GCATC | 5 cut(s) | 31, 164, 465, 517, 1057 |
| BpiI | GAAGAC | 2 cut(s) | 252, 617 |
| BpmI | CTGGAG | 1 cut(s) | 19 |
| Bpu10I | CCTNAGC | 1 cut(s) | 93 |
| BpuEI | CTTGAG | 1 cut(s) | 444 |
| BpuMI | CCSGG | 1 cut(s) | 315 |
| BsaAI | YACGTR | 1 cut(s) | 877 |
| BsaHI | GRCGYC | 1 cut(s) | 481 |
| BsaJI | CCNNGG | 1 cut(s) | 776 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 500, 530 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 755, 756, 826 |
| Bse21I | CCTNAGG | 1 cut(s) | 968 |
| Bse3DI | GCAATG | 1 cut(s) | 923 |
| BseDI | CCNNGG | 1 cut(s) | 776 |
| BseGI | GGATG | 5 cut(s) | 22, 155, 435, 532, 1072 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 755, 756, 826 |
| BseMI | GCAATG | 1 cut(s) | 923 |
| BseMII | CTCAG | 4 cut(s) | 84, 514, 654, 959 |
| BseRI | GAGGAG | 1 cut(s) | 229 |
| BseSI | GKGCMC | 1 cut(s) | 762 |
| BseXI | GCAGC | 8 cut(s) | 23, 47, 123, 130, 157, 160, 803, 1057 |
| BseYI | CCCAGC | 1 cut(s) | 122 |
| BsgI | GTGCAG | 4 cut(s) | 31, 46, 59, 132 |
| Bsh1236I | CGCG | 1 cut(s) | 58 |
| BshFI | GGCC | 2 cut(s) | 318, 926 |
| BsiHKAI | GWGCWC | 2 cut(s) | 99, 978 |
| BsiSI | CCGG | 1 cut(s) | 315 |
| BslFI | GGGAC | 5 cut(s) | 113, 324, 801, 810, 977 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 755, 756, 826 |
| BsmAI | GTCTC | 1 cut(s) | 1008 |
| BsmBI | CGTCTC | 1 cut(s) | 1008 |
| BsmFI | GGGAC | 5 cut(s) | 113, 324, 801, 810, 977 |
| BsnI | GGCC | 2 cut(s) | 318, 926 |
| Bsp1286I | GDGCHC | 4 cut(s) | 99, 547, 762, 978 |
| Bsp143I | GATC | 3 cut(s) | 424, 519, 888 |
| BspACI | CCGC | 6 cut(s) | 56, 68, 105, 141, 197, 851 |
| BspANI | GGCC | 2 cut(s) | 318, 926 |
| BspCNI | CTCAG | 4 cut(s) | 85, 513, 655, 960 |
| BspFNI | CGCG | 1 cut(s) | 58 |
| BspHI | TCATGA | 1 cut(s) | 727 |
| BspLI | GGNNCC | 4 cut(s) | 312, 313, 807, 965 |
| BspMAI | CTGCAG | 4 cut(s) | 113, 120, 207, 1075 |
| BspMI | ACCTGC | 2 cut(s) | 92, 210 |
| BspPI | GGATC | 1 cut(s) | 896 |
| BspQI | GCTCTTC | 1 cut(s) | 552 |
| BsrBI | CCGCTC | 2 cut(s) | 70, 851 |
| BsrDI | GCAATG | 1 cut(s) | 923 |
| BssECI | CCNNGG | 1 cut(s) | 776 |
| BssMI | GATC | 3 cut(s) | 424, 519, 888 |
| BssNI | GRCGYC | 1 cut(s) | 481 |
| BssSI | CACGAG | 1 cut(s) | 683 |
| BssT1I | CCWWGG | 1 cut(s) | 776 |
| Bst2BI | CACGAG | 1 cut(s) | 683 |
| Bst4CI | ACNGT | 2 cut(s) | 187, 363 |
| Bst6I | CTCTTC | 2 cut(s) | 552, 876 |
| BstACI | GRCGYC | 1 cut(s) | 481 |
| BstBAI | YACGTR | 1 cut(s) | 877 |
| BstC8I | GCNNGC | 7 cut(s) | 56, 105, 109, 116, 136, 178, 456 |
| BstDEI | CTNAG | 5 cut(s) | 93, 500, 663, 717, 968 |
| BstF5I | GGATG | 5 cut(s) | 22, 155, 435, 532, 1072 |
| BstFNI | CGCG | 1 cut(s) | 58 |
| BstHHI | GCGC | 2 cut(s) | 60, 1062 |
| BstKTI | GATC | 3 cut(s) | 427, 522, 891 |
| BstMAI | GTCTC | 1 cut(s) | 1008 |
| BstMBI | GATC | 3 cut(s) | 424, 519, 888 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 45, 60, 140, 766 |
| BstNSI | RCATGY | 1 cut(s) | 458 |
| BstSCI | CCNGG | 1 cut(s) | 313 |
| BstSFI | CTRYAG | 5 cut(s) | 27, 109, 116, 203, 1071 |
| BstSLI | GKGCMC | 1 cut(s) | 762 |
| BstUI | CGCG | 1 cut(s) | 58 |
| BstV1I | GCAGC | 8 cut(s) | 23, 47, 123, 130, 157, 160, 803, 1057 |
| BstV2I | GAAGAC | 2 cut(s) | 252, 617 |
| BstX2I | RGATCY | 1 cut(s) | 424 |
| BstYI | RGATCY | 1 cut(s) | 424 |
| Bsu36I | CCTNAGG | 1 cut(s) | 968 |
| BsuRI | GGCC | 2 cut(s) | 318, 926 |
| BtsCI | GGATG | 5 cut(s) | 22, 155, 435, 532, 1072 |
| BtsI | GCAGTG | 1 cut(s) | 144 |
| BtsIMutI | CAGTG | 1 cut(s) | 144 |
| BveI | ACCTGC | 2 cut(s) | 92, 210 |
| Cac8I | GCNNGC | 7 cut(s) | 56, 105, 109, 116, 136, 178, 456 |
| CaiI | CAGNNNCTG | 1 cut(s) | 191 |
| CciI | TCATGA | 1 cut(s) | 727 |
| CfoI | GCGC | 2 cut(s) | 60, 1062 |
| Cfr13I | GGNCC | 4 cut(s) | 311, 317, 806, 964 |
| CseI | GACGC | 2 cut(s) | 115, 489 |
| Csp6I | GTAC | 1 cut(s) | 985 |
| CviAII | CATG | 6 cut(s) | 455, 562, 671, 728, 791, 859 |
| CviQI | GTAC | 1 cut(s) | 985 |
| DdeI | CTNAG | 5 cut(s) | 93, 500, 663, 717, 968 |
| DpnI | GATC | 3 cut(s) | 426, 521, 890 |
| DpnII | GATC | 3 cut(s) | 424, 519, 888 |
| DraIII | CACNNNGTG | 1 cut(s) | 982 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 804 |
| DriI | GACNNNNNGTC | 1 cut(s) | 584 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 804 |
| Eam1104I | CTCTTC | 2 cut(s) | 552, 876 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 584 |
| EarI | CTCTTC | 2 cut(s) | 552, 876 |
| Eco130I | CCWWGG | 1 cut(s) | 776 |
| Eco24I | GRGCYC | 1 cut(s) | 547 |
| Eco47I | GGWCC | 3 cut(s) | 311, 806, 964 |
| Eco57I | CTGAAG | 3 cut(s) | 186, 414, 1068 |
| Eco72I | CACGTG | 1 cut(s) | 877 |
| Eco81I | CCTNAGG | 1 cut(s) | 968 |
| EcoO109I | RGGNCCY | 2 cut(s) | 311, 964 |
| EcoT14I | CCWWGG | 1 cut(s) | 776 |
| EcoT38I | GRGCYC | 1 cut(s) | 547 |
| ErhI | CCWWGG | 1 cut(s) | 776 |
| Esp3I | CGTCTC | 1 cut(s) | 1008 |
| FaeI | CATG | 6 cut(s) | 458, 565, 674, 731, 794, 862 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 972, 1004 |
| FaqI | GGGAC | 5 cut(s) | 113, 324, 801, 810, 977 |
| FatI | CATG | 6 cut(s) | 454, 561, 670, 727, 790, 858 |
| FauI | CCCGC | 4 cut(s) | 63, 112, 148, 204 |
| FauNDI | CATATG | 1 cut(s) | 486 |
| Fnu4HI | GCNGC | 8 cut(s) | 12, 61, 112, 119, 171, 174, 817, 1071 |
| FokI | GGATG | 5 cut(s) | 9, 142, 422, 539, 1079 |
| FriOI | GRGCYC | 1 cut(s) | 547 |
| Fsp4HI | GCNGC | 8 cut(s) | 12, 61, 112, 119, 171, 174, 817, 1071 |
| FspBI | CTAG | 3 cut(s) | 152, 777, 938 |
| FspI | TGCGCA | 1 cut(s) | 1061 |
| GlaI | GCGC | 2 cut(s) | 59, 1061 |
| GluI | GCNGC | 8 cut(s) | 12, 61, 112, 119, 171, 174, 817, 1071 |
| GsaI | CCCAGC | 1 cut(s) | 126 |
| GsuI | CTGGAG | 1 cut(s) | 19 |
| HaeIII | GGCC | 2 cut(s) | 318, 926 |
| HapII | CCGG | 1 cut(s) | 315 |
| HgaI | GACGC | 2 cut(s) | 115, 489 |
| HhaI | GCGC | 2 cut(s) | 60, 1062 |
| Hin1I | GRCGYC | 1 cut(s) | 481 |
| Hin1II | CATG | 6 cut(s) | 458, 565, 674, 731, 794, 862 |
| Hin6I | GCGC | 2 cut(s) | 58, 1060 |
| HinP1I | GCGC | 2 cut(s) | 58, 1060 |
| HinfI | GANTC | 2 cut(s) | 570, 613 |
| HpaII | CCGG | 1 cut(s) | 315 |
| HphI | GGTGA | 1 cut(s) | 1018 |
| Hpy166II | GTNNAC | 1 cut(s) | 985 |
| Hpy188I | TCNGA | 2 cut(s) | 440, 503 |
| Hpy188III | TCNNGA | 9 cut(s) | 366, 392, 472, 662, 685, 702, 728, 827, 945 |
| Hpy8I | GTNNAC | 1 cut(s) | 985 |
| Hpy99I | CGWCG | 1 cut(s) | 483 |
| HpyAV | CCTTC | 4 cut(s) | 247, 278, 634, 824 |
| HpyCH4III | ACNGT | 2 cut(s) | 187, 363 |
| HpyCH4IV | ACGT | 3 cut(s) | 799, 876, 1017 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 45, 60, 140, 766 |
| HpyF3I | CTNAG | 5 cut(s) | 93, 500, 663, 717, 968 |
| HpySE526I | ACGT | 3 cut(s) | 799, 876, 1017 |
| Hsp92I | GRCGYC | 1 cut(s) | 481 |
| Hsp92II | CATG | 6 cut(s) | 458, 565, 674, 731, 794, 862 |
| HspAI | GCGC | 2 cut(s) | 58, 1060 |
| KflI | GGGWCCC | 1 cut(s) | 311 |
| Kzo9I | GATC | 3 cut(s) | 424, 519, 888 |
| LguI | GCTCTTC | 1 cut(s) | 552 |
| LmnI | GCTCC | 4 cut(s) | 75, 766, 848, 973 |
| Lsp1109I | GCAGC | 8 cut(s) | 23, 47, 123, 130, 157, 160, 803, 1057 |
| LweI | GCATC | 5 cut(s) | 31, 164, 465, 517, 1057 |
| MaeI | CTAG | 3 cut(s) | 152, 777, 938 |
| MaeII | ACGT | 3 cut(s) | 799, 876, 1017 |
| MaeIII | GTNAC | 1 cut(s) | 586 |
| MalI | GATC | 3 cut(s) | 426, 521, 890 |
| MbiI | CCGCTC | 2 cut(s) | 70, 851 |
| MboI | GATC | 3 cut(s) | 424, 519, 888 |
| MflI | RGATCY | 1 cut(s) | 424 |
| MhlI | GDGCHC | 4 cut(s) | 99, 547, 762, 978 |
| MluCI | AATT | 5 cut(s) | 557, 603, 691, 697, 736 |
| MlyI | GAGTC | 1 cut(s) | 607 |
| MseI | TTAA | 1 cut(s) | 1020 |
| MslI | CAYNNNNRTG | 2 cut(s) | 385, 683 |
| MspI | CCGG | 1 cut(s) | 315 |
| MspR9I | CCNGG | 1 cut(s) | 315 |
| MvnI | CGCG | 1 cut(s) | 58 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 45, 60, 140, 766 |
| NciI | CCSGG | 1 cut(s) | 315 |
| NdeI | CATATG | 1 cut(s) | 486 |
| NdeII | GATC | 3 cut(s) | 424, 519, 888 |
| NlaIII | CATG | 6 cut(s) | 458, 565, 674, 731, 794, 862 |
| NlaIV | GGNNCC | 4 cut(s) | 312, 313, 807, 965 |
| NmuCI | GTSAC | 1 cut(s) | 586 |
| NsbI | TGCGCA | 1 cut(s) | 1061 |
| NspI | RCATGY | 1 cut(s) | 458 |
| OliI | CACNNNNGTG | 1 cut(s) | 385 |
| PaeI | GCATGC | 1 cut(s) | 458 |
| PagI | TCATGA | 1 cut(s) | 727 |
| PaqCI | CACCTGC | 1 cut(s) | 210 |
| PciSI | GCTCTTC | 1 cut(s) | 552 |
| PfeI | GAWTC | 1 cut(s) | 570 |
| PkrI | GCNGC | 8 cut(s) | 13, 62, 113, 120, 172, 175, 818, 1072 |
| PleI | GAGTC | 1 cut(s) | 607 |
| PmaCI | CACGTG | 1 cut(s) | 877 |
| PmlI | CACGTG | 1 cut(s) | 877 |
| PpsI | GAGTC | 1 cut(s) | 607 |
| Ppu21I | YACGTR | 1 cut(s) | 877 |
| PpuMI | RGGWCCY | 2 cut(s) | 311, 964 |
| PsiI | TTATAA | 2 cut(s) | 696, 741 |
| Psp5II | RGGWCCY | 2 cut(s) | 311, 964 |
| PspCI | CACGTG | 1 cut(s) | 877 |
| PspFI | CCCAGC | 1 cut(s) | 122 |
| PspN4I | GGNNCC | 4 cut(s) | 312, 313, 807, 965 |
| PspPI | GGNCC | 4 cut(s) | 311, 317, 806, 964 |
| PspPPI | RGGWCCY | 2 cut(s) | 311, 964 |
| PstI | CTGCAG | 4 cut(s) | 113, 120, 207, 1075 |
| PstNI | CAGNNNCTG | 1 cut(s) | 191 |
| PsuI | RGATCY | 1 cut(s) | 424 |
| RsaI | GTAC | 1 cut(s) | 986 |
| RsaNI | GTAC | 1 cut(s) | 985 |
| RseI | CAYNNNNRTG | 2 cut(s) | 385, 683 |
| SapI | GCTCTTC | 1 cut(s) | 552 |
| SaqAI | TTAA | 1 cut(s) | 1020 |
| SatI | GCNGC | 8 cut(s) | 12, 61, 112, 119, 171, 174, 817, 1071 |
| Sau3AI | GATC | 3 cut(s) | 424, 519, 888 |
| Sau96I | GGNCC | 4 cut(s) | 311, 317, 806, 964 |
| SchI | GAGTC | 1 cut(s) | 607 |
| ScrFI | CCNGG | 1 cut(s) | 315 |
| SduI | GDGCHC | 4 cut(s) | 99, 547, 762, 978 |
| SfaNI | GCATC | 5 cut(s) | 31, 164, 465, 517, 1057 |
| SfcI | CTRYAG | 5 cut(s) | 27, 109, 116, 203, 1071 |
| SinI | GGWCC | 3 cut(s) | 311, 806, 964 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 385, 683 |
| SmlI | CTYRAG | 1 cut(s) | 459 |
| SmoI | CTYRAG | 1 cut(s) | 459 |
| SphI | GCATGC | 1 cut(s) | 458 |
| Sse9I | AATT | 5 cut(s) | 557, 603, 691, 697, 736 |
| SsiI | CCGC | 6 cut(s) | 56, 68, 105, 141, 197, 851 |
| SspMI | CTAG | 3 cut(s) | 152, 777, 938 |
| StyD4I | CCNGG | 1 cut(s) | 313 |
| StyI | CCWWGG | 1 cut(s) | 776 |
| TaaI | ACNGT | 2 cut(s) | 187, 363 |
| TaiI | ACGT | 3 cut(s) | 802, 879, 1020 |
| TaqI | TCGA | 1 cut(s) | 518 |
| TasI | AATT | 5 cut(s) | 557, 603, 691, 697, 736 |
| TfiI | GAWTC | 1 cut(s) | 570 |
| Tru1I | TTAA | 1 cut(s) | 1020 |
| Tru9I | TTAA | 1 cut(s) | 1020 |
| TscAI | CASTG | 1 cut(s) | 151 |
| TseFI | GTSAC | 1 cut(s) | 586 |
| TseI | GCWGC | 8 cut(s) | 11, 60, 111, 118, 170, 173, 816, 1070 |
| Tsp45I | GTSAC | 1 cut(s) | 586 |
| TspDTI | ATGAA | 4 cut(s) | 424, 550, 716, 1068 |
| TspGWI | ACGGA | 2 cut(s) | 240, 895 |
| TspRI | CASTG | 1 cut(s) | 151 |
| VpaK11BI | GGWCC | 3 cut(s) | 311, 806, 964 |
| XceI | RCATGY | 1 cut(s) | 458 |
| XmaJI | CCTAGG | 1 cut(s) | 776 |
| XspI | CTAG | 3 cut(s) | 152, 777, 938 |