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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 687 |
| AarI | CACCTGC | 1 cut(s) | 81 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1020 |
| Acc16I | TGCGCA | 1 cut(s) | 1071 |
| Acc36I | ACCTGC | 1 cut(s) | 81 |
| AccB1I | GGYRCC | 2 cut(s) | 863, 1174 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 220 |
| AccII | CGCG | 2 cut(s) | 963, 1164 |
| AciI | CCGC | 4 cut(s) | 17, 87, 655, 1110 |
| AclI | AACGTT | 1 cut(s) | 606 |
| AclWI | GGATC | 1 cut(s) | 1230 |
| AcoI | YGGCCR | 2 cut(s) | 222, 1120 |
| AcyI | GRCGYC | 2 cut(s) | 1134, 1175 |
| AfaI | GTAC | 1 cut(s) | 678 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 220, 400, 974, 1042 |
| AgsI | TTSAA | 3 cut(s) | 358, 461, 670 |
| AhlI | ACTAGT | 1 cut(s) | 200 |
| Alw21I | GWGCWC | 2 cut(s) | 45, 537 |
| Alw26I | GTCTC | 1 cut(s) | 368 |
| AlwI | GGATC | 1 cut(s) | 1230 |
| AoxI | GGCC | 4 cut(s) | 222, 1120, 1238, 1333 |
| ApeKI | GCWGC | 8 cut(s) | 80, 103, 155, 158, 188, 191, 449, 452 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 699 |
| AspLEI | GCGC | 5 cut(s) | 35, 1072, 1166, 1177, 1308 |
| AspS9I | GGNCC | 3 cut(s) | 1022, 1238, 1333 |
| AsuHPI | GGTGA | 1 cut(s) | 1142 |
| AsuNHI | GCTAGC | 1 cut(s) | 125 |
| AvaII | GGWCC | 1 cut(s) | 1022 |
| BalI | TGGCCA | 1 cut(s) | 224 |
| BanI | GGYRCC | 2 cut(s) | 863, 1174 |
| BanII | GRGCYC | 1 cut(s) | 537 |
| BbsI | GAAGAC | 3 cut(s) | 567, 770, 1204 |
| Bbv12I | GWGCWC | 2 cut(s) | 45, 537 |
| BbvI | GCAGC | 8 cut(s) | 92, 115, 167, 170, 200, 203, 436, 439 |
| BccI | CCATC | 4 cut(s) | 416, 509, 636, 791 |
| BciVI | GTATCC | 2 cut(s) | 383, 1266 |
| BcoDI | GTCTC | 1 cut(s) | 368 |
| BcuI | ACTAGT | 1 cut(s) | 200 |
| BfaI | CTAG | 4 cut(s) | 117, 126, 201, 918 |
| BfmI | CTRYAG | 3 cut(s) | 78, 130, 955 |
| BfoI | RGCGCY | 1 cut(s) | 1178 |
| BfuAI | ACCTGC | 1 cut(s) | 81 |
| BfuI | GTATCC | 2 cut(s) | 383, 1266 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1172 |
| BisI | GCNGC | 8 cut(s) | 81, 104, 156, 159, 189, 192, 450, 453 |
| BlsI | GCNGC | 8 cut(s) | 82, 105, 157, 160, 190, 193, 451, 454 |
| Bme18I | GGWCC | 1 cut(s) | 1022 |
| BmgT120I | GGNCC | 3 cut(s) | 1022, 1238, 1333 |
| BmiI | GGNNCC | 4 cut(s) | 865, 1114, 1176, 1190 |
| BmtI | GCTAGC | 1 cut(s) | 129 |
| BpiI | GAAGAC | 3 cut(s) | 567, 770, 1204 |
| BpmI | CTGGAG | 2 cut(s) | 392, 965 |
| BpuEI | CTTGAG | 1 cut(s) | 608 |
| BsaAI | YACGTR | 1 cut(s) | 100 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1221 |
| BsaHI | GRCGYC | 2 cut(s) | 1134, 1175 |
| BsaJI | CCNNGG | 2 cut(s) | 1078, 1123 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 220, 400, 974, 1042 |
| Bse1I | ACTGG | 2 cut(s) | 375, 1348 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1221 |
| BseDI | CCNNGG | 2 cut(s) | 1078, 1123 |
| BseGI | GGATG | 4 cut(s) | 339, 408, 433, 1153 |
| BseJI | GATNNNNATC | 1 cut(s) | 1221 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 220, 400, 974, 1042 |
| BseMII | CTCAG | 2 cut(s) | 705, 870 |
| BseNI | ACTGG | 2 cut(s) | 375, 1348 |
| BseRI | GAGGAG | 1 cut(s) | 429 |
| BseXI | GCAGC | 8 cut(s) | 92, 115, 167, 170, 200, 203, 436, 439 |
| BsgI | GTGCAG | 3 cut(s) | 122, 158, 774 |
| Bsh1236I | CGCG | 2 cut(s) | 963, 1164 |
| BshFI | GGCC | 4 cut(s) | 224, 1122, 1240, 1335 |
| BshNI | GGYRCC | 2 cut(s) | 863, 1174 |
| BsiHKAI | GWGCWC | 2 cut(s) | 45, 537 |
| BsiSI | CCGG | 1 cut(s) | 1119 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 220, 400, 974, 1042 |
| BsmAI | GTCTC | 1 cut(s) | 368 |
| BsnI | GGCC | 4 cut(s) | 224, 1122, 1240, 1335 |
| Bsp1286I | GDGCHC | 2 cut(s) | 45, 537 |
| Bsp143I | GATC | 4 cut(s) | 1084, 1181, 1222, 1326 |
| Bsp19I | CCATGG | 1 cut(s) | 1123 |
| Bsp68I | TCGCGA | 1 cut(s) | 963 |
| BspACI | CCGC | 4 cut(s) | 17, 87, 655, 1110 |
| BspANI | GGCC | 4 cut(s) | 224, 1122, 1240, 1335 |
| BspCNI | CTCAG | 2 cut(s) | 704, 871 |
| BspFNI | CGCG | 2 cut(s) | 963, 1164 |
| BspHI | TCATGA | 2 cut(s) | 510, 850 |
| BspLI | GGNNCC | 4 cut(s) | 865, 1114, 1176, 1190 |
| BspMAI | CTGCAG | 1 cut(s) | 82 |
| BspMI | ACCTGC | 1 cut(s) | 81 |
| BspOI | GCTAGC | 1 cut(s) | 129 |
| BspPI | GGATC | 1 cut(s) | 1230 |
| BspQI | GCTCTTC | 1 cut(s) | 705 |
| BspT107I | GGYRCC | 2 cut(s) | 863, 1174 |
| BsrI | ACTGG | 2 cut(s) | 375, 1348 |
| BssECI | CCNNGG | 2 cut(s) | 1078, 1123 |
| BssMI | GATC | 4 cut(s) | 1084, 1181, 1222, 1326 |
| BssNI | GRCGYC | 2 cut(s) | 1134, 1175 |
| BssT1I | CCWWGG | 1 cut(s) | 1123 |
| Bst4CI | ACNGT | 1 cut(s) | 1079 |
| Bst6I | CTCTTC | 2 cut(s) | 705, 1091 |
| BstACI | GRCGYC | 2 cut(s) | 1134, 1175 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 172 |
| BstBAI | YACGTR | 1 cut(s) | 100 |
| BstC8I | GCNNGC | 6 cut(s) | 27, 31, 78, 127, 168, 1068 |
| BstDEI | CTNAG | 7 cut(s) | 281, 419, 691, 804, 879, 933, 993 |
| BstDSI | CCRYGG | 2 cut(s) | 1078, 1123 |
| BstF5I | GGATG | 4 cut(s) | 339, 408, 433, 1153 |
| BstFNI | CGCG | 2 cut(s) | 963, 1164 |
| BstH2I | RGCGCY | 1 cut(s) | 1178 |
| BstHHI | GCGC | 5 cut(s) | 35, 1072, 1166, 1177, 1308 |
| BstKTI | GATC | 4 cut(s) | 1087, 1184, 1225, 1329 |
| BstMAI | GTCTC | 1 cut(s) | 368 |
| BstMBI | GATC | 4 cut(s) | 1084, 1181, 1222, 1326 |
| BstNSI | RCATGY | 1 cut(s) | 1250 |
| BstSFI | CTRYAG | 3 cut(s) | 78, 130, 955 |
| BstUI | CGCG | 2 cut(s) | 963, 1164 |
| BstV1I | GCAGC | 8 cut(s) | 92, 115, 167, 170, 200, 203, 436, 439 |
| BstV2I | GAAGAC | 3 cut(s) | 567, 770, 1204 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1343 |
| BsuI | GTATCC | 2 cut(s) | 383, 1266 |
| BsuRI | GGCC | 4 cut(s) | 224, 1122, 1240, 1335 |
| BtgI | CCRYGG | 2 cut(s) | 1078, 1123 |
| BtsCI | GGATG | 4 cut(s) | 339, 408, 433, 1153 |
| BtsI | GCAGTG | 1 cut(s) | 170 |
| BtsIMutI | CAGTG | 2 cut(s) | 170, 791 |
| BtuMI | TCGCGA | 1 cut(s) | 963 |
| BveI | ACCTGC | 1 cut(s) | 81 |
| Cac8I | GCNNGC | 6 cut(s) | 27, 31, 78, 127, 168, 1068 |
| CciI | TCATGA | 2 cut(s) | 510, 850 |
| CfoI | GCGC | 5 cut(s) | 35, 1072, 1166, 1177, 1308 |
| Cfr13I | GGNCC | 3 cut(s) | 1022, 1238, 1333 |
| CseI | GACGC | 3 cut(s) | 987, 1142, 1282 |
| Csp6I | GTAC | 1 cut(s) | 677 |
| CviAII | CATG | 7 cut(s) | 511, 523, 851, 868, 1124, 1247, 1314 |
| CviQI | GTAC | 1 cut(s) | 677 |
| DdeI | CTNAG | 7 cut(s) | 281, 419, 691, 804, 879, 933, 993 |
| DinI | GGCGCC | 1 cut(s) | 1176 |
| DpnI | GATC | 4 cut(s) | 1086, 1183, 1224, 1328 |
| DpnII | GATC | 4 cut(s) | 1084, 1181, 1222, 1326 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1020 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1020 |
| EaeI | YGGCCR | 2 cut(s) | 222, 1120 |
| Eam1104I | CTCTTC | 2 cut(s) | 705, 1091 |
| EarI | CTCTTC | 2 cut(s) | 705, 1091 |
| EciI | GGCGGA | 1 cut(s) | 1125 |
| Ecl136II | GAGCTC | 1 cut(s) | 535 |
| Eco130I | CCWWGG | 1 cut(s) | 1123 |
| Eco24I | GRGCYC | 1 cut(s) | 537 |
| Eco32I | GATATC | 1 cut(s) | 137 |
| Eco47I | GGWCC | 1 cut(s) | 1022 |
| Eco53kI | GAGCTC | 1 cut(s) | 535 |
| EcoICRI | GAGCTC | 1 cut(s) | 535 |
| EcoRV | GATATC | 1 cut(s) | 137 |
| EcoT14I | CCWWGG | 1 cut(s) | 1123 |
| EcoT38I | GRGCYC | 1 cut(s) | 537 |
| EgeI | GGCGCC | 1 cut(s) | 1176 |
| EheI | GGCGCC | 1 cut(s) | 1176 |
| ErhI | CCWWGG | 1 cut(s) | 1123 |
| FaeI | CATG | 7 cut(s) | 514, 526, 854, 871, 1127, 1250, 1317 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 344, 376 |
| FatI | CATG | 7 cut(s) | 510, 522, 850, 867, 1123, 1246, 1313 |
| FauI | CCCGC | 2 cut(s) | 24, 94 |
| FauNDI | CATATG | 1 cut(s) | 1092 |
| Fnu4HI | GCNGC | 8 cut(s) | 81, 104, 156, 159, 189, 192, 450, 453 |
| FokI | GGATG | 4 cut(s) | 346, 395, 440, 1140 |
| FriOI | GRGCYC | 1 cut(s) | 537 |
| Fsp4HI | GCNGC | 8 cut(s) | 81, 104, 156, 159, 189, 192, 450, 453 |
| FspBI | CTAG | 4 cut(s) | 117, 126, 201, 918 |
| FspI | TGCGCA | 1 cut(s) | 1071 |
| GlaI | GCGC | 5 cut(s) | 34, 1071, 1165, 1176, 1307 |
| GluI | GCNGC | 8 cut(s) | 81, 104, 156, 159, 189, 192, 450, 453 |
| GsuI | CTGGAG | 2 cut(s) | 392, 965 |
| HaeII | RGCGCY | 1 cut(s) | 1178 |
| HaeIII | GGCC | 4 cut(s) | 224, 1122, 1240, 1335 |
| HapII | CCGG | 1 cut(s) | 1119 |
| HgaI | GACGC | 3 cut(s) | 987, 1142, 1282 |
| HhaI | GCGC | 5 cut(s) | 35, 1072, 1166, 1177, 1308 |
| Hin1I | GRCGYC | 2 cut(s) | 1134, 1175 |
| Hin1II | CATG | 7 cut(s) | 514, 526, 854, 871, 1127, 1250, 1317 |
| Hin6I | GCGC | 5 cut(s) | 33, 1070, 1164, 1175, 1306 |
| HinP1I | GCGC | 5 cut(s) | 33, 1070, 1164, 1175, 1306 |
| HinfI | GANTC | 4 cut(s) | 4, 614, 766, 947 |
| HpaII | CCGG | 1 cut(s) | 1119 |
| HphI | GGTGA | 1 cut(s) | 1142 |
| Hpy188I | TCNGA | 6 cut(s) | 198, 232, 312, 694, 816, 1231 |
| Hpy188III | TCNNGA | 8 cut(s) | 425, 511, 626, 851, 944, 962, 1011, 1291 |
| HpyAV | CCTTC | 2 cut(s) | 218, 1040 |
| HpyCH4III | ACNGT | 1 cut(s) | 1079 |
| HpyCH4IV | ACGT | 3 cut(s) | 99, 606, 1015 |
| HpyCH4V | TGCA | 7 cut(s) | 80, 103, 166, 175, 188, 791, 1270 |
| HpyF3I | CTNAG | 7 cut(s) | 281, 419, 691, 804, 879, 933, 993 |
| HpySE526I | ACGT | 3 cut(s) | 99, 606, 1015 |
| Hsp92I | GRCGYC | 2 cut(s) | 1134, 1175 |
| Hsp92II | CATG | 7 cut(s) | 514, 526, 854, 871, 1127, 1250, 1317 |
| HspAI | GCGC | 5 cut(s) | 33, 1070, 1164, 1175, 1306 |
| KasI | GGCGCC | 1 cut(s) | 1174 |
| Kzo9I | GATC | 4 cut(s) | 1084, 1181, 1222, 1326 |
| LguI | GCTCTTC | 1 cut(s) | 705 |
| LmnI | GCTCC | 7 cut(s) | 111, 199, 470, 540, 1112, 1188, 1317 |
| Lsp1109I | GCAGC | 8 cut(s) | 92, 115, 167, 170, 200, 203, 436, 439 |
| MaeI | CTAG | 4 cut(s) | 117, 126, 201, 918 |
| MaeII | ACGT | 3 cut(s) | 99, 606, 1015 |
| MaeIII | GTNAC | 3 cut(s) | 203, 611, 1130 |
| MalI | GATC | 4 cut(s) | 1086, 1183, 1224, 1328 |
| MboI | GATC | 4 cut(s) | 1084, 1181, 1222, 1326 |
| MboII | GAAGA | 7 cut(s) | 572, 692, 775, 916, 1108, 1204, 1336 |
| MhlI | GDGCHC | 2 cut(s) | 45, 537 |
| MlsI | TGGCCA | 1 cut(s) | 224 |
| MluCI | AATT | 4 cut(s) | 215, 248, 808, 1006 |
| MluNI | TGGCCA | 1 cut(s) | 224 |
| Mly113I | GGCGCC | 1 cut(s) | 1175 |
| MlyI | GAGTC | 3 cut(s) | 608, 760, 956 |
| MmeI | TCCRAC | 2 cut(s) | 221, 255 |
| Mox20I | TGGCCA | 1 cut(s) | 224 |
| MroXI | GAANNNNTTC | 1 cut(s) | 699 |
| MscI | TGGCCA | 1 cut(s) | 224 |
| MseI | TTAA | 2 cut(s) | 113, 1357 |
| MslI | CAYNNNNRTG | 4 cut(s) | 509, 525, 1128, 1202 |
| Msp20I | TGGCCA | 1 cut(s) | 224 |
| MspI | CCGG | 1 cut(s) | 1119 |
| MvnI | CGCG | 2 cut(s) | 963, 1164 |
| NarI | GGCGCC | 1 cut(s) | 1175 |
| NcoI | CCATGG | 1 cut(s) | 1123 |
| NdeI | CATATG | 1 cut(s) | 1092 |
| NdeII | GATC | 4 cut(s) | 1084, 1181, 1222, 1326 |
| NheI | GCTAGC | 1 cut(s) | 125 |
| NlaIII | CATG | 7 cut(s) | 514, 526, 854, 871, 1127, 1250, 1317 |
| NlaIV | GGNNCC | 4 cut(s) | 865, 1114, 1176, 1190 |
| NmuCI | GTSAC | 3 cut(s) | 203, 611, 1130 |
| NruI | TCGCGA | 1 cut(s) | 963 |
| NsbI | TGCGCA | 1 cut(s) | 1071 |
| NspI | RCATGY | 1 cut(s) | 1250 |
| PagI | TCATGA | 2 cut(s) | 510, 850 |
| PaqCI | CACCTGC | 1 cut(s) | 81 |
| PciSI | GCTCTTC | 1 cut(s) | 705 |
| PdmI | GAANNNNTTC | 1 cut(s) | 699 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 220 |
| PkrI | GCNGC | 8 cut(s) | 82, 105, 157, 160, 190, 193, 451, 454 |
| PleI | GAGTC | 3 cut(s) | 608, 760, 955 |
| PluTI | GGCGCC | 1 cut(s) | 1178 |
| PpsI | GAGTC | 3 cut(s) | 608, 760, 955 |
| Ppu21I | YACGTR | 1 cut(s) | 100 |
| PsiI | TTATAA | 1 cut(s) | 687 |
| Psp124BI | GAGCTC | 1 cut(s) | 537 |
| Psp1406I | AACGTT | 1 cut(s) | 606 |
| PspN4I | GGNNCC | 4 cut(s) | 865, 1114, 1176, 1190 |
| PspPI | GGNCC | 3 cut(s) | 1022, 1238, 1333 |
| PstI | CTGCAG | 1 cut(s) | 82 |
| RruI | TCGCGA | 1 cut(s) | 963 |
| RsaI | GTAC | 1 cut(s) | 678 |
| RsaNI | GTAC | 1 cut(s) | 677 |
| RseI | CAYNNNNRTG | 4 cut(s) | 509, 525, 1128, 1202 |
| SacI | GAGCTC | 1 cut(s) | 537 |
| SapI | GCTCTTC | 1 cut(s) | 705 |
| SaqAI | TTAA | 2 cut(s) | 113, 1357 |
| SatI | GCNGC | 8 cut(s) | 81, 104, 156, 159, 189, 192, 450, 453 |
| Sau3AI | GATC | 4 cut(s) | 1084, 1181, 1222, 1326 |
| Sau96I | GGNCC | 3 cut(s) | 1022, 1238, 1333 |
| SchI | GAGTC | 3 cut(s) | 608, 760, 956 |
| SduI | GDGCHC | 2 cut(s) | 45, 537 |
| SfcI | CTRYAG | 3 cut(s) | 78, 130, 955 |
| SfoI | GGCGCC | 1 cut(s) | 1176 |
| SinI | GGWCC | 1 cut(s) | 1022 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 509, 525, 1128, 1202 |
| SmlI | CTYRAG | 1 cut(s) | 587 |
| SmoI | CTYRAG | 1 cut(s) | 587 |
| SpeI | ACTAGT | 1 cut(s) | 200 |
| Sse9I | AATT | 4 cut(s) | 215, 248, 808, 1006 |
| SsiI | CCGC | 4 cut(s) | 17, 87, 655, 1110 |
| SspDI | GGCGCC | 1 cut(s) | 1174 |
| SspI | AATATT | 1 cut(s) | 1266 |
| SspMI | CTAG | 4 cut(s) | 117, 126, 201, 918 |
| SstI | GAGCTC | 1 cut(s) | 537 |
| StyI | CCWWGG | 1 cut(s) | 1123 |
| TaaI | ACNGT | 1 cut(s) | 1079 |
| TaiI | ACGT | 3 cut(s) | 102, 609, 1018 |
| TaqI | TCGA | 6 cut(s) | 7, 45, 268, 367, 1180, 1215 |
| TasI | AATT | 4 cut(s) | 215, 248, 808, 1006 |
| TatI | WGTACW | 1 cut(s) | 676 |
| Tru1I | TTAA | 2 cut(s) | 113, 1357 |
| Tru9I | TTAA | 2 cut(s) | 113, 1357 |
| TscAI | CASTG | 2 cut(s) | 177, 798 |
| TseFI | GTSAC | 3 cut(s) | 203, 611, 1130 |
| TseI | GCWGC | 8 cut(s) | 80, 103, 155, 158, 188, 191, 449, 452 |
| Tsp45I | GTSAC | 3 cut(s) | 203, 611, 1130 |
| TspDTI | ATGAA | 6 cut(s) | 504, 539, 734, 839, 884, 1109 |
| TspRI | CASTG | 2 cut(s) | 177, 798 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 220 |
| VpaK11BI | GGWCC | 1 cut(s) | 1022 |
| XceI | RCATGY | 1 cut(s) | 1250 |
| XmnI | GAANNNNTTC | 1 cut(s) | 699 |
| XspI | CTAG | 4 cut(s) | 117, 126, 201, 918 |