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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 710 |
| AccII | CGCG | 1 cut(s) | 176 |
| AciI | CCGC | 1 cut(s) | 592 |
| AclWI | GGATC | 1 cut(s) | 782 |
| AcsI | RAATTY | 3 cut(s) | 333, 659, 753 |
| AcuI | CTGAAG | 1 cut(s) | 860 |
| AfaI | GTAC | 2 cut(s) | 154, 309 |
| AgsI | TTSAA | 6 cut(s) | 70, 189, 224, 607, 818, 855 |
| AjiI | CACGTC | 1 cut(s) | 367 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 519, 551 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 455, 487 |
| AluBI | AGCT | 3 cut(s) | 386, 392, 793 |
| AluI | AGCT | 3 cut(s) | 386, 392, 793 |
| Alw21I | GWGCWC | 1 cut(s) | 795 |
| Alw26I | GTCTC | 1 cut(s) | 523 |
| AlwI | GGATC | 1 cut(s) | 782 |
| Ama87I | CYCGRG | 1 cut(s) | 350 |
| AoxI | GGCC | 1 cut(s) | 509 |
| ApeKI | GCWGC | 1 cut(s) | 47 |
| ApoI | RAATTY | 3 cut(s) | 333, 659, 753 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 636 |
| AsuHPI | GGTGA | 3 cut(s) | 38, 314, 430 |
| AvaI | CYCGRG | 1 cut(s) | 350 |
| BanII | GRGCYC | 1 cut(s) | 795 |
| BauI | CACGAG | 1 cut(s) | 168 |
| Bbv12I | GWGCWC | 1 cut(s) | 795 |
| BbvI | GCAGC | 1 cut(s) | 59 |
| BccI | CCATC | 5 cut(s) | 17, 133, 323, 573, 727 |
| BceAI | ACGGC | 1 cut(s) | 496 |
| BciVI | GTATCC | 1 cut(s) | 334 |
| BcoDI | GTCTC | 1 cut(s) | 523 |
| BfmI | CTRYAG | 1 cut(s) | 765 |
| BfuI | GTATCC | 1 cut(s) | 334 |
| BglII | AGATCT | 1 cut(s) | 58 |
| BisI | GCNGC | 1 cut(s) | 48 |
| BlsI | GCNGC | 1 cut(s) | 49 |
| BmeT110I | CYCGRG | 1 cut(s) | 350 |
| BmgBI | CACGTC | 1 cut(s) | 367 |
| BmiI | GGNNCC | 2 cut(s) | 36, 165 |
| BmsI | GCATC | 2 cut(s) | 325, 673 |
| BpuEI | CTTGAG | 2 cut(s) | 305, 372 |
| BsaI | GGTCTC | 1 cut(s) | 523 |
| BsaJI | CCNNGG | 1 cut(s) | 512 |
| Bse1I | ACTGG | 2 cut(s) | 255, 475 |
| BseDI | CCNNGG | 1 cut(s) | 512 |
| BseGI | GGATG | 4 cut(s) | 28, 97, 469, 831 |
| BseMII | CTCAG | 2 cut(s) | 140, 642 |
| BseNI | ACTGG | 2 cut(s) | 255, 475 |
| BseXI | GCAGC | 1 cut(s) | 59 |
| Bsh1236I | CGCG | 1 cut(s) | 176 |
| BshFI | GGCC | 1 cut(s) | 511 |
| BsiHKAI | GWGCWC | 1 cut(s) | 795 |
| BsiHKCI | CYCGRG | 1 cut(s) | 350 |
| BsmAI | GTCTC | 1 cut(s) | 523 |
| BsnI | GGCC | 1 cut(s) | 511 |
| Bso31I | GGTCTC | 1 cut(s) | 523 |
| BsoBI | CYCGRG | 1 cut(s) | 350 |
| Bsp1286I | GDGCHC | 1 cut(s) | 795 |
| Bsp143I | GATC | 4 cut(s) | 58, 145, 202, 774 |
| Bsp68I | TCGCGA | 1 cut(s) | 176 |
| BspACI | CCGC | 1 cut(s) | 592 |
| BspANI | GGCC | 1 cut(s) | 511 |
| BspCNI | CTCAG | 2 cut(s) | 141, 641 |
| BspFNI | CGCG | 1 cut(s) | 176 |
| BspHI | TCATGA | 2 cut(s) | 787, 804 |
| BspLI | GGNNCC | 2 cut(s) | 36, 165 |
| BspMAI | CTGCAG | 1 cut(s) | 769 |
| BspPI | GGATC | 1 cut(s) | 782 |
| BspTNI | GGTCTC | 1 cut(s) | 523 |
| BsrI | ACTGG | 2 cut(s) | 255, 475 |
| BssECI | CCNNGG | 1 cut(s) | 512 |
| BssMI | GATC | 4 cut(s) | 58, 145, 202, 774 |
| BssSI | CACGAG | 1 cut(s) | 168 |
| Bst2BI | CACGAG | 1 cut(s) | 168 |
| Bst4CI | ACNGT | 2 cut(s) | 89, 376 |
| BstC8I | GCNNGC | 3 cut(s) | 218, 314, 384 |
| BstDEI | CTNAG | 6 cut(s) | 62, 149, 415, 503, 628, 741 |
| BstDSI | CCRYGG | 1 cut(s) | 512 |
| BstF5I | GGATG | 4 cut(s) | 28, 97, 469, 831 |
| BstFNI | CGCG | 1 cut(s) | 176 |
| BstKTI | GATC | 4 cut(s) | 61, 148, 205, 777 |
| BstMAI | GTCTC | 1 cut(s) | 523 |
| BstMBI | GATC | 4 cut(s) | 58, 145, 202, 774 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 53, 182, 191, 871 |
| BstSFI | CTRYAG | 1 cut(s) | 765 |
| BstUI | CGCG | 1 cut(s) | 176 |
| BstV1I | GCAGC | 1 cut(s) | 59 |
| BstX2I | RGATCY | 1 cut(s) | 58 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 23 |
| BstYI | RGATCY | 1 cut(s) | 58 |
| BsuI | GTATCC | 1 cut(s) | 334 |
| BsuRI | GGCC | 1 cut(s) | 511 |
| BtgI | CCRYGG | 1 cut(s) | 512 |
| BtgZI | GCGATG | 1 cut(s) | 701 |
| BtrI | CACGTC | 1 cut(s) | 367 |
| BtsCI | GGATG | 4 cut(s) | 28, 97, 469, 831 |
| BtsI | GCAGTG | 1 cut(s) | 88 |
| BtsIMutI | CAGTG | 1 cut(s) | 88 |
| BtuMI | TCGCGA | 1 cut(s) | 176 |
| Cac8I | GCNNGC | 3 cut(s) | 218, 314, 384 |
| CciI | TCATGA | 2 cut(s) | 787, 804 |
| Csp6I | GTAC | 2 cut(s) | 153, 308 |
| CviAII | CATG | 6 cut(s) | 112, 156, 780, 788, 805, 824 |
| CviQI | GTAC | 2 cut(s) | 153, 308 |
| DdeI | CTNAG | 6 cut(s) | 62, 149, 415, 503, 628, 741 |
| DpnI | GATC | 4 cut(s) | 60, 147, 204, 776 |
| DpnII | GATC | 4 cut(s) | 58, 145, 202, 774 |
| Ecl136II | GAGCTC | 1 cut(s) | 793 |
| Eco24I | GRGCYC | 1 cut(s) | 795 |
| Eco31I | GGTCTC | 1 cut(s) | 523 |
| Eco32I | GATATC | 2 cut(s) | 287, 676 |
| Eco53kI | GAGCTC | 1 cut(s) | 793 |
| Eco57I | CTGAAG | 1 cut(s) | 860 |
| Eco88I | CYCGRG | 1 cut(s) | 350 |
| EcoICRI | GAGCTC | 1 cut(s) | 793 |
| EcoRI | GAATTC | 2 cut(s) | 333, 659 |
| EcoRV | GATATC | 2 cut(s) | 287, 676 |
| EcoT38I | GRGCYC | 1 cut(s) | 795 |
| FaeI | CATG | 6 cut(s) | 115, 159, 783, 791, 808, 827 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 486, 518 |
| FatI | CATG | 6 cut(s) | 111, 155, 779, 787, 804, 823 |
| FauNDI | CATATG | 1 cut(s) | 459 |
| FblI | GTMKAC | 1 cut(s) | 710 |
| Fnu4HI | GCNGC | 1 cut(s) | 48 |
| FokI | GGATG | 4 cut(s) | 35, 84, 476, 818 |
| FriOI | GRGCYC | 1 cut(s) | 795 |
| Fsp4HI | GCNGC | 1 cut(s) | 48 |
| GluI | GCNGC | 1 cut(s) | 48 |
| HaeIII | GGCC | 1 cut(s) | 511 |
| Hin1II | CATG | 6 cut(s) | 115, 159, 783, 791, 808, 827 |
| HindIII | AAGCTT | 1 cut(s) | 390 |
| HinfI | GANTC | 9 cut(s) | 171, 346, 419, 451, 467, 551, 703, 722, 801 |
| HphI | GGTGA | 3 cut(s) | 38, 314, 430 |
| Hpy166II | GTNNAC | 1 cut(s) | 711 |
| Hpy188I | TCNGA | 6 cut(s) | 39, 150, 565, 631, 840, 883 |
| Hpy188III | TCNNGA | 9 cut(s) | 175, 200, 282, 338, 350, 362, 788, 805, 855 |
| Hpy8I | GTNNAC | 1 cut(s) | 711 |
| HpyAV | CCTTC | 6 cut(s) | 64, 218, 451, 501, 724, 845 |
| HpyCH4III | ACNGT | 2 cut(s) | 89, 376 |
| HpyCH4IV | ACGT | 2 cut(s) | 366, 543 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 728, 767 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 53, 182, 191, 871 |
| HpyF3I | CTNAG | 6 cut(s) | 62, 149, 415, 503, 628, 741 |
| HpySE526I | ACGT | 2 cut(s) | 366, 543 |
| Hsp92II | CATG | 6 cut(s) | 115, 159, 783, 791, 808, 827 |
| Kzo9I | GATC | 4 cut(s) | 58, 145, 202, 774 |
| Lsp1109I | GCAGC | 1 cut(s) | 59 |
| LweI | GCATC | 2 cut(s) | 325, 673 |
| MaeII | ACGT | 2 cut(s) | 366, 543 |
| MaeIII | GTNAC | 5 cut(s) | 26, 83, 236, 436, 760 |
| MalI | GATC | 4 cut(s) | 60, 147, 204, 776 |
| MboI | GATC | 4 cut(s) | 58, 145, 202, 774 |
| MboII | GAAGA | 5 cut(s) | 100, 506, 539, 712, 853 |
| MfeI | CAATTG | 1 cut(s) | 273 |
| MflI | RGATCY | 1 cut(s) | 58 |
| MhlI | GDGCHC | 1 cut(s) | 795 |
| MluCI | AATT | 5 cut(s) | 273, 333, 659, 753, 850 |
| MlyI | GAGTC | 5 cut(s) | 180, 428, 445, 716, 810 |
| MnlI | CCTC | 4 cut(s) | 13, 25, 111, 599 |
| MroXI | GAANNNNTTC | 1 cut(s) | 636 |
| MseI | TTAA | 1 cut(s) | 653 |
| MslI | CAYNNNNRTG | 1 cut(s) | 462 |
| MunI | CAATTG | 1 cut(s) | 273 |
| MvnI | CGCG | 1 cut(s) | 176 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 53, 182, 191, 871 |
| NdeI | CATATG | 1 cut(s) | 459 |
| NdeII | GATC | 4 cut(s) | 58, 145, 202, 774 |
| NlaIII | CATG | 6 cut(s) | 115, 159, 783, 791, 808, 827 |
| NlaIV | GGNNCC | 2 cut(s) | 36, 165 |
| NmuCI | GTSAC | 3 cut(s) | 26, 83, 436 |
| NruI | TCGCGA | 1 cut(s) | 176 |
| PaeR7I | CTCGAG | 1 cut(s) | 350 |
| PagI | TCATGA | 2 cut(s) | 787, 804 |
| PdmI | GAANNNNTTC | 1 cut(s) | 636 |
| PfeI | GAWTC | 4 cut(s) | 346, 467, 551, 703 |
| PkrI | GCNGC | 1 cut(s) | 49 |
| PleI | GAGTC | 5 cut(s) | 179, 427, 445, 716, 809 |
| PpsI | GAGTC | 5 cut(s) | 179, 427, 445, 716, 809 |
| Psp124BI | GAGCTC | 1 cut(s) | 795 |
| PspN4I | GGNNCC | 2 cut(s) | 36, 165 |
| PstI | CTGCAG | 1 cut(s) | 769 |
| PsuI | RGATCY | 1 cut(s) | 58 |
| RruI | TCGCGA | 1 cut(s) | 176 |
| RsaI | GTAC | 2 cut(s) | 154, 309 |
| RsaNI | GTAC | 2 cut(s) | 153, 308 |
| RseI | CAYNNNNRTG | 1 cut(s) | 462 |
| SacI | GAGCTC | 1 cut(s) | 795 |
| SaqAI | TTAA | 1 cut(s) | 653 |
| SatI | GCNGC | 1 cut(s) | 48 |
| Sau3AI | GATC | 4 cut(s) | 58, 145, 202, 774 |
| SchI | GAGTC | 5 cut(s) | 180, 428, 445, 716, 810 |
| SduI | GDGCHC | 1 cut(s) | 795 |
| SfaNI | GCATC | 2 cut(s) | 325, 673 |
| SfcI | CTRYAG | 1 cut(s) | 765 |
| Sfr274I | CTCGAG | 1 cut(s) | 350 |
| SlaI | CTCGAG | 1 cut(s) | 350 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 462 |
| SmlI | CTYRAG | 3 cut(s) | 320, 350, 387 |
| SmoI | CTYRAG | 3 cut(s) | 320, 350, 387 |
| Sse9I | AATT | 5 cut(s) | 273, 333, 659, 753, 850 |
| SsiI | CCGC | 1 cut(s) | 592 |
| SstI | GAGCTC | 1 cut(s) | 795 |
| TaaI | ACNGT | 2 cut(s) | 89, 376 |
| TaiI | ACGT | 2 cut(s) | 369, 546 |
| TaqI | TCGA | 4 cut(s) | 351, 454, 525, 751 |
| TasI | AATT | 5 cut(s) | 273, 333, 659, 753, 850 |
| TatI | WGTACW | 1 cut(s) | 152 |
| TfiI | GAWTC | 4 cut(s) | 346, 467, 551, 703 |
| Tru1I | TTAA | 1 cut(s) | 653 |
| Tru9I | TTAA | 1 cut(s) | 653 |
| TscAI | CASTG | 1 cut(s) | 88 |
| TseFI | GTSAC | 3 cut(s) | 26, 83, 436 |
| TseI | GCWGC | 1 cut(s) | 47 |
| Tsp45I | GTSAC | 3 cut(s) | 26, 83, 436 |
| TspDTI | ATGAA | 6 cut(s) | 86, 100, 503, 507, 776, 821 |
| TspGWI | ACGGA | 2 cut(s) | 536, 787 |
| TspRI | CASTG | 1 cut(s) | 88 |
| XapI | RAATTY | 3 cut(s) | 333, 659, 753 |
| XhoI | CTCGAG | 1 cut(s) | 350 |
| XmiI | GTMKAC | 1 cut(s) | 710 |
| XmnI | GAANNNNTTC | 1 cut(s) | 636 |