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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 290 |
| AccB1I | GGYRCC | 3 cut(s) | 376, 397, 548 |
| AciI | CCGC | 1 cut(s) | 371 |
| AclWI | GGATC | 2 cut(s) | 223, 486 |
| AcvI | CACGTG | 1 cut(s) | 352 |
| AcyI | GRCGYC | 1 cut(s) | 377 |
| AdeI | CACNNNGTG | 1 cut(s) | 427 |
| AfaI | GTAC | 1 cut(s) | 571 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 98, 353, 411 |
| AflIII | ACRYGT | 2 cut(s) | 349, 461 |
| AgsI | TTSAA | 6 cut(s) | 12, 19, 48, 296, 498, 530 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 115 |
| AluBI | AGCT | 6 cut(s) | 76, 132, 234, 256, 526, 631 |
| AluI | AGCT | 6 cut(s) | 76, 132, 234, 256, 526, 631 |
| Alw21I | GWGCWC | 2 cut(s) | 432, 647 |
| Alw26I | GTCTC | 1 cut(s) | 593 |
| Alw44I | GTGCAC | 2 cut(s) | 428, 643 |
| AlwI | GGATC | 2 cut(s) | 223, 486 |
| AoxI | GGCC | 1 cut(s) | 298 |
| ApaLI | GTGCAC | 2 cut(s) | 428, 643 |
| ApeKI | GCWGC | 1 cut(s) | 655 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 77, 493 |
| AspA2I | CCTAGG | 1 cut(s) | 409 |
| AspLEI | GCGC | 2 cut(s) | 35, 379 |
| AsuHPI | GGTGA | 2 cut(s) | 73, 603 |
| AvrII | CCTAGG | 1 cut(s) | 409 |
| BaeGI | GKGCMC | 2 cut(s) | 432, 647 |
| BanI | GGYRCC | 3 cut(s) | 376, 397, 548 |
| BauI | CACGAG | 1 cut(s) | 277 |
| BbrPI | CACGTG | 1 cut(s) | 352 |
| Bbv12I | GWGCWC | 2 cut(s) | 432, 647 |
| BbvI | GCAGC | 1 cut(s) | 667 |
| BccI | CCATC | 1 cut(s) | 614 |
| BcoDI | GTCTC | 1 cut(s) | 593 |
| BfaI | CTAG | 2 cut(s) | 410, 523 |
| BfmI | CTRYAG | 1 cut(s) | 85 |
| BfoI | RGCGCY | 1 cut(s) | 380 |
| BisI | GCNGC | 1 cut(s) | 656 |
| BlnI | CCTAGG | 1 cut(s) | 409 |
| BlsI | GCNGC | 1 cut(s) | 657 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 115 |
| BmiI | GGNNCC | 3 cut(s) | 378, 399, 550 |
| BmsI | GCATC | 1 cut(s) | 642 |
| BoxI | GACNNNNGTC | 1 cut(s) | 464 |
| Bsa29I | ATCGAT | 1 cut(s) | 471 |
| BsaAI | YACGTR | 1 cut(s) | 352 |
| BsaBI | GATNNNNATC | 1 cut(s) | 477 |
| BsaHI | GRCGYC | 1 cut(s) | 377 |
| BsaJI | CCNNGG | 2 cut(s) | 380, 409 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 348, 378 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 98, 353, 411 |
| Bse3DI | GCAATG | 1 cut(s) | 508 |
| Bse8I | GATNNNNATC | 1 cut(s) | 477 |
| BseCI | ATCGAT | 1 cut(s) | 471 |
| BseDI | CCNNGG | 2 cut(s) | 380, 409 |
| BseGI | GGATG | 2 cut(s) | 602, 657 |
| BseJI | GATNNNNATC | 1 cut(s) | 477 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 98, 353, 411 |
| BseMI | GCAATG | 1 cut(s) | 508 |
| BseMII | CTCAG | 3 cut(s) | 248, 448, 544 |
| BseSI | GKGCMC | 2 cut(s) | 432, 647 |
| BseXI | GCAGC | 1 cut(s) | 667 |
| BshFI | GGCC | 1 cut(s) | 300 |
| BshNI | GGYRCC | 3 cut(s) | 376, 397, 548 |
| BshVI | ATCGAT | 1 cut(s) | 471 |
| BsiHKAI | GWGCWC | 2 cut(s) | 432, 647 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 98, 353, 411 |
| BsmAI | GTCTC | 1 cut(s) | 593 |
| BsnI | GGCC | 1 cut(s) | 300 |
| Bsp1286I | GDGCHC | 2 cut(s) | 432, 647 |
| Bsp143I | GATC | 2 cut(s) | 215, 478 |
| Bsp19I | CCATGG | 1 cut(s) | 380 |
| BspACI | CCGC | 1 cut(s) | 371 |
| BspANI | GGCC | 1 cut(s) | 300 |
| BspCNI | CTCAG | 3 cut(s) | 249, 447, 545 |
| BspDI | ATCGAT | 1 cut(s) | 471 |
| BspHI | TCATGA | 1 cut(s) | 218 |
| BspLI | GGNNCC | 3 cut(s) | 378, 399, 550 |
| BspPI | GGATC | 2 cut(s) | 223, 486 |
| BspQI | GCTCTTC | 1 cut(s) | 83 |
| BspT107I | GGYRCC | 3 cut(s) | 376, 397, 548 |
| BsrDI | GCAATG | 1 cut(s) | 508 |
| BssECI | CCNNGG | 2 cut(s) | 380, 409 |
| BssMI | GATC | 2 cut(s) | 215, 478 |
| BssNI | GRCGYC | 1 cut(s) | 377 |
| BssSI | CACGAG | 1 cut(s) | 277 |
| BssT1I | CCWWGG | 2 cut(s) | 380, 409 |
| Bst2BI | CACGAG | 1 cut(s) | 277 |
| Bst4CI | ACNGT | 2 cut(s) | 89, 406 |
| Bst6I | CTCTTC | 1 cut(s) | 83 |
| BstACI | GRCGYC | 1 cut(s) | 377 |
| BstBAI | YACGTR | 1 cut(s) | 352 |
| BstC8I | GCNNGC | 2 cut(s) | 513, 517 |
| BstDEI | CTNAG | 3 cut(s) | 257, 434, 553 |
| BstDSI | CCRYGG | 1 cut(s) | 380 |
| BstF5I | GGATG | 2 cut(s) | 602, 657 |
| BstH2I | RGCGCY | 1 cut(s) | 380 |
| BstHHI | GCGC | 2 cut(s) | 35, 379 |
| BstKTI | GATC | 2 cut(s) | 218, 481 |
| BstMAI | GTCTC | 1 cut(s) | 593 |
| BstMBI | GATC | 2 cut(s) | 215, 478 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 323, 512 |
| BstNSI | RCATGY | 1 cut(s) | 465 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 464 |
| BstSFI | CTRYAG | 1 cut(s) | 85 |
| BstSLI | GKGCMC | 2 cut(s) | 432, 647 |
| BstV1I | GCAGC | 1 cut(s) | 667 |
| Bsu15I | ATCGAT | 1 cut(s) | 471 |
| BsuRI | GGCC | 1 cut(s) | 300 |
| BsuTUI | ATCGAT | 1 cut(s) | 471 |
| BtgI | CCRYGG | 1 cut(s) | 380 |
| BtsCI | GGATG | 2 cut(s) | 602, 657 |
| Cac8I | GCNNGC | 2 cut(s) | 513, 517 |
| CciI | TCATGA | 1 cut(s) | 218 |
| CfoI | GCGC | 2 cut(s) | 35, 379 |
| ClaI | ATCGAT | 1 cut(s) | 471 |
| Csp6I | GTAC | 1 cut(s) | 570 |
| CviAII | CATG | 6 cut(s) | 93, 219, 265, 381, 388, 462 |
| CviJI | RGCY | 8 cut(s) | 76, 132, 234, 256, 300, 385, 526, 631 |
| CviKI_1 | RGCY | 8 cut(s) | 76, 132, 234, 256, 300, 385, 526, 631 |
| CviQI | GTAC | 1 cut(s) | 570 |
| DdeI | CTNAG | 3 cut(s) | 257, 434, 553 |
| DinI | GGCGCC | 1 cut(s) | 378 |
| DpnI | GATC | 2 cut(s) | 217, 480 |
| DpnII | GATC | 2 cut(s) | 215, 478 |
| DraIII | CACNNNGTG | 1 cut(s) | 427 |
| DriI | GACNNNNNGTC | 1 cut(s) | 115 |
| Eam1104I | CTCTTC | 1 cut(s) | 83 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 115 |
| EarI | CTCTTC | 1 cut(s) | 83 |
| Eco130I | CCWWGG | 2 cut(s) | 380, 409 |
| Eco147I | AGGCCT | 1 cut(s) | 300 |
| Eco72I | CACGTG | 1 cut(s) | 352 |
| EcoT14I | CCWWGG | 2 cut(s) | 380, 409 |
| EgeI | GGCGCC | 1 cut(s) | 378 |
| EheI | GGCGCC | 1 cut(s) | 378 |
| ErhI | CCWWGG | 2 cut(s) | 380, 409 |
| FaeI | CATG | 6 cut(s) | 96, 222, 268, 384, 391, 465 |
| FatI | CATG | 6 cut(s) | 92, 218, 264, 380, 387, 461 |
| Fnu4HI | GCNGC | 1 cut(s) | 656 |
| FokI | GGATG | 2 cut(s) | 589, 664 |
| Fsp4HI | GCNGC | 1 cut(s) | 656 |
| FspBI | CTAG | 2 cut(s) | 410, 523 |
| GlaI | GCGC | 2 cut(s) | 34, 378 |
| GluI | GCNGC | 1 cut(s) | 656 |
| HaeII | RGCGCY | 1 cut(s) | 380 |
| HaeIII | GGCC | 1 cut(s) | 300 |
| HhaI | GCGC | 2 cut(s) | 35, 379 |
| Hin1I | GRCGYC | 1 cut(s) | 377 |
| Hin1II | CATG | 6 cut(s) | 96, 222, 268, 384, 391, 465 |
| Hin6I | GCGC | 2 cut(s) | 33, 377 |
| HinP1I | GCGC | 2 cut(s) | 33, 377 |
| HphI | GGTGA | 2 cut(s) | 73, 603 |
| Hpy166II | GTNNAC | 2 cut(s) | 430, 645 |
| Hpy188I | TCNGA | 1 cut(s) | 72 |
| Hpy188III | TCNNGA | 3 cut(s) | 219, 279, 530 |
| Hpy8I | GTNNAC | 2 cut(s) | 430, 645 |
| HpyAV | CCTTC | 2 cut(s) | 6, 165 |
| HpyCH4III | ACNGT | 2 cut(s) | 89, 406 |
| HpyCH4IV | ACGT | 2 cut(s) | 351, 426 |
| HpyCH4V | TGCA | 5 cut(s) | 430, 506, 577, 645, 655 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 323, 512 |
| HpyF3I | CTNAG | 3 cut(s) | 257, 434, 553 |
| HpySE526I | ACGT | 2 cut(s) | 351, 426 |
| Hsp92I | GRCGYC | 1 cut(s) | 377 |
| Hsp92II | CATG | 6 cut(s) | 96, 222, 268, 384, 391, 465 |
| HspAI | GCGC | 2 cut(s) | 33, 377 |
| KasI | GGCGCC | 1 cut(s) | 376 |
| Kzo9I | GATC | 2 cut(s) | 215, 478 |
| LguI | GCTCTTC | 1 cut(s) | 83 |
| LpnPI | CCDG | 5 cut(s) | 17, 128, 194, 531, 565 |
| Lsp1109I | GCAGC | 1 cut(s) | 667 |
| LweI | GCATC | 1 cut(s) | 642 |
| MaeI | CTAG | 2 cut(s) | 410, 523 |
| MaeII | ACGT | 2 cut(s) | 351, 426 |
| MaeIII | GTNAC | 2 cut(s) | 117, 337 |
| MalI | GATC | 2 cut(s) | 217, 480 |
| MboI | GATC | 2 cut(s) | 215, 478 |
| MboII | GAAGA | 4 cut(s) | 70, 592, 595, 598 |
| MhlI | GDGCHC | 2 cut(s) | 432, 647 |
| MluCI | AATT | 5 cut(s) | 66, 134, 285, 291, 489 |
| Mly113I | GGCGCC | 1 cut(s) | 377 |
| MnlI | CCTC | 6 cut(s) | 92, 202, 215, 439, 443, 612 |
| MroXI | GAANNNNTTC | 2 cut(s) | 77, 493 |
| MseI | TTAA | 1 cut(s) | 439 |
| MslI | CAYNNNNRTG | 4 cut(s) | 277, 392, 473, 650 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 323, 512 |
| NarI | GGCGCC | 1 cut(s) | 377 |
| NcoI | CCATGG | 1 cut(s) | 380 |
| NdeII | GATC | 2 cut(s) | 215, 478 |
| NlaIII | CATG | 6 cut(s) | 96, 222, 268, 384, 391, 465 |
| NlaIV | GGNNCC | 3 cut(s) | 378, 399, 550 |
| NmuCI | GTSAC | 2 cut(s) | 117, 337 |
| NspI | RCATGY | 1 cut(s) | 465 |
| PagI | TCATGA | 1 cut(s) | 218 |
| PceI | AGGCCT | 1 cut(s) | 300 |
| PciI | ACATGT | 1 cut(s) | 461 |
| PciSI | GCTCTTC | 1 cut(s) | 83 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 423 |
| PdmI | GAANNNNTTC | 2 cut(s) | 77, 493 |
| PkrI | GCNGC | 1 cut(s) | 657 |
| PluTI | GGCGCC | 1 cut(s) | 380 |
| PmaCI | CACGTG | 1 cut(s) | 352 |
| PmlI | CACGTG | 1 cut(s) | 352 |
| Ppu21I | YACGTR | 1 cut(s) | 352 |
| PscI | ACATGT | 1 cut(s) | 461 |
| PshAI | GACNNNNGTC | 1 cut(s) | 464 |
| PsiI | TTATAA | 1 cut(s) | 290 |
| PspCI | CACGTG | 1 cut(s) | 352 |
| PspN4I | GGNNCC | 3 cut(s) | 378, 399, 550 |
| RsaI | GTAC | 1 cut(s) | 571 |
| RsaNI | GTAC | 1 cut(s) | 570 |
| RseI | CAYNNNNRTG | 4 cut(s) | 277, 392, 473, 650 |
| SapI | GCTCTTC | 1 cut(s) | 83 |
| SaqAI | TTAA | 1 cut(s) | 439 |
| SatI | GCNGC | 1 cut(s) | 656 |
| Sau3AI | GATC | 2 cut(s) | 215, 478 |
| SduI | GDGCHC | 2 cut(s) | 432, 647 |
| SfaNI | GCATC | 1 cut(s) | 642 |
| SfcI | CTRYAG | 1 cut(s) | 85 |
| SfoI | GGCGCC | 1 cut(s) | 378 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 277, 392, 473, 650 |
| Sse9I | AATT | 5 cut(s) | 66, 134, 285, 291, 489 |
| SseBI | AGGCCT | 1 cut(s) | 300 |
| SsiI | CCGC | 1 cut(s) | 371 |
| SspDI | GGCGCC | 1 cut(s) | 376 |
| SspMI | CTAG | 2 cut(s) | 410, 523 |
| StuI | AGGCCT | 1 cut(s) | 300 |
| StyI | CCWWGG | 2 cut(s) | 380, 409 |
| TaaI | ACNGT | 2 cut(s) | 89, 406 |
| TaiI | ACGT | 2 cut(s) | 354, 429 |
| TaqI | TCGA | 1 cut(s) | 471 |
| TasI | AATT | 5 cut(s) | 66, 134, 285, 291, 489 |
| Tru1I | TTAA | 1 cut(s) | 439 |
| Tru9I | TTAA | 1 cut(s) | 439 |
| TseFI | GTSAC | 2 cut(s) | 117, 337 |
| TseI | GCWGC | 1 cut(s) | 655 |
| Tsp45I | GTSAC | 2 cut(s) | 117, 337 |
| TspDTI | ATGAA | 3 cut(s) | 217, 298, 653 |
| TspGWI | ACGGA | 1 cut(s) | 228 |
| VneI | GTGCAC | 2 cut(s) | 428, 643 |
| XceI | RCATGY | 1 cut(s) | 465 |
| XmaJI | CCTAGG | 1 cut(s) | 409 |
| XmnI | GAANNNNTTC | 2 cut(s) | 77, 493 |
| XspI | CTAG | 2 cut(s) | 410, 523 |