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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 789 |
| Acc36I | ACCTGC | 1 cut(s) | 125 |
| AccII | CGCG | 5 cut(s) | 207, 237, 253, 298, 306 |
| AclI | AACGTT | 1 cut(s) | 708 |
| AclWI | GGATC | 2 cut(s) | 659, 672 |
| AcoI | YGGCCR | 1 cut(s) | 42 |
| AcsI | RAATTY | 1 cut(s) | 437 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 40, 481, 658 |
| AflII | CTTAAG | 1 cut(s) | 506 |
| AgsI | TTSAA | 4 cut(s) | 454, 584, 686, 772 |
| AjiI | CACGTC | 1 cut(s) | 634 |
| AjnI | CCWGG | 1 cut(s) | 87 |
| AluBI | AGCT | 3 cut(s) | 572, 596, 676 |
| AluI | AGCT | 3 cut(s) | 572, 596, 676 |
| Alw21I | GWGCWC | 1 cut(s) | 639 |
| Alw26I | GTCTC | 1 cut(s) | 819 |
| AlwI | GGATC | 2 cut(s) | 659, 672 |
| AoxI | GGCC | 4 cut(s) | 42, 177, 208, 299 |
| ApeKI | GCWGC | 5 cut(s) | 55, 226, 264, 362, 694 |
| ApoI | RAATTY | 1 cut(s) | 437 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 801 |
| AspA2I | CCTAGG | 1 cut(s) | 11 |
| AspLEI | GCGC | 2 cut(s) | 467, 498 |
| AspS9I | GGNCC | 2 cut(s) | 178, 484 |
| AsuC2I | CCSGG | 1 cut(s) | 41 |
| AsuHPI | GGTGA | 2 cut(s) | 58, 98 |
| AvaII | GGWCC | 1 cut(s) | 484 |
| AvrII | CCTAGG | 1 cut(s) | 11 |
| BamHI | GGATCC | 1 cut(s) | 664 |
| BauI | CACGAG | 2 cut(s) | 159, 326 |
| Bbv12I | GWGCWC | 1 cut(s) | 639 |
| BbvCI | CCTCAGC | 1 cut(s) | 172 |
| BbvI | GCAGC | 5 cut(s) | 42, 238, 276, 374, 706 |
| BccI | CCATC | 9 cut(s) | 53, 71, 111, 146, 509, 539, 611, 738, 814 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 215, 243, 249, 277 |
| BciT130I | CCWGG | 1 cut(s) | 89 |
| BciVI | GTATCC | 1 cut(s) | 464 |
| BcnI | CCSGG | 1 cut(s) | 41 |
| BcoDI | GTCTC | 1 cut(s) | 819 |
| BfaI | CTAG | 3 cut(s) | 12, 129, 543 |
| BfmI | CTRYAG | 2 cut(s) | 262, 393 |
| BfoI | RGCGCY | 1 cut(s) | 468 |
| BfrI | CTTAAG | 1 cut(s) | 506 |
| BfuAI | ACCTGC | 1 cut(s) | 125 |
| BfuI | GTATCC | 1 cut(s) | 464 |
| BisI | GCNGC | 9 cut(s) | 56, 177, 208, 227, 265, 299, 352, 363, 695 |
| BlnI | CCTAGG | 1 cut(s) | 11 |
| BlsI | GCNGC | 9 cut(s) | 57, 178, 209, 228, 266, 300, 353, 364, 696 |
| Bme1390I | CCNGG | 2 cut(s) | 41, 89 |
| Bme18I | GGWCC | 1 cut(s) | 484 |
| BmgBI | CACGTC | 1 cut(s) | 634 |
| BmgT120I | GGNCC | 2 cut(s) | 178, 484 |
| BmiI | GGNNCC | 3 cut(s) | 180, 485, 666 |
| BmrFI | CCNGG | 2 cut(s) | 41, 89 |
| BmsI | GCATC | 4 cut(s) | 299, 341, 363, 454 |
| Bpu10I | CCTNAGC | 1 cut(s) | 172 |
| BpuEI | CTTGAG | 1 cut(s) | 710 |
| BpuMI | CCSGG | 1 cut(s) | 41 |
| BsaJI | CCNNGG | 2 cut(s) | 11, 88 |
| BsaWI | WCCGGW | 1 cut(s) | 428 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 542, 572 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 40, 481, 658 |
| Bse1I | ACTGG | 1 cut(s) | 466 |
| BseBI | CCWGG | 1 cut(s) | 89 |
| BseDI | CCNNGG | 2 cut(s) | 11, 88 |
| BseGI | GGATG | 7 cut(s) | 199, 218, 256, 290, 309, 376, 531 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 40, 481, 658 |
| BseMII | CTCAG | 1 cut(s) | 186 |
| BseNI | ACTGG | 1 cut(s) | 466 |
| BseRI | GAGGAG | 1 cut(s) | 674 |
| BseXI | GCAGC | 5 cut(s) | 42, 238, 276, 374, 706 |
| BseYI | CCCAGC | 1 cut(s) | 412 |
| Bsh1236I | CGCG | 5 cut(s) | 207, 237, 253, 298, 306 |
| BshFI | GGCC | 4 cut(s) | 44, 179, 210, 301 |
| BsiHKAI | GWGCWC | 1 cut(s) | 639 |
| BsiSI | CCGG | 2 cut(s) | 41, 429 |
| BslFI | GGGAC | 2 cut(s) | 105, 255 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 40, 481, 658 |
| BsmAI | GTCTC | 1 cut(s) | 819 |
| BsmFI | GGGAC | 2 cut(s) | 105, 255 |
| BsmI | GAATGC | 1 cut(s) | 229 |
| BsnI | GGCC | 4 cut(s) | 44, 179, 210, 301 |
| Bsp1286I | GDGCHC | 1 cut(s) | 639 |
| Bsp143I | GATC | 2 cut(s) | 131, 664 |
| Bsp68I | TCGCGA | 3 cut(s) | 237, 253, 306 |
| BspANI | GGCC | 4 cut(s) | 44, 179, 210, 301 |
| BspCNI | CTCAG | 1 cut(s) | 185 |
| BspFNI | CGCG | 5 cut(s) | 207, 237, 253, 298, 306 |
| BspHI | TCATGA | 1 cut(s) | 612 |
| BspLI | GGNNCC | 3 cut(s) | 180, 485, 666 |
| BspMAI | CTGCAG | 2 cut(s) | 266, 397 |
| BspMI | ACCTGC | 1 cut(s) | 125 |
| BspPI | GGATC | 2 cut(s) | 659, 672 |
| BspQI | GCTCTTC | 1 cut(s) | 11 |
| BspTI | CTTAAG | 1 cut(s) | 506 |
| BsrI | ACTGG | 1 cut(s) | 466 |
| BssECI | CCNNGG | 2 cut(s) | 11, 88 |
| BssMI | GATC | 2 cut(s) | 131, 664 |
| BssSI | CACGAG | 2 cut(s) | 159, 326 |
| BssT1I | CCWWGG | 1 cut(s) | 11 |
| Bst2BI | CACGAG | 2 cut(s) | 159, 326 |
| Bst2UI | CCWGG | 1 cut(s) | 89 |
| Bst4CI | ACNGT | 2 cut(s) | 70, 577 |
| Bst6I | CTCTTC | 2 cut(s) | 11, 41 |
| BstAFI | CTTAAG | 1 cut(s) | 506 |
| BstC8I | GCNNGC | 1 cut(s) | 570 |
| BstDEI | CTNAG | 1 cut(s) | 172 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 656 |
| BstF5I | GGATG | 7 cut(s) | 199, 218, 256, 290, 309, 376, 531 |
| BstFNI | CGCG | 5 cut(s) | 207, 237, 253, 298, 306 |
| BstH2I | RGCGCY | 1 cut(s) | 468 |
| BstHHI | GCGC | 2 cut(s) | 467, 498 |
| BstKTI | GATC | 2 cut(s) | 134, 667 |
| BstMAI | GTCTC | 1 cut(s) | 819 |
| BstMBI | GATC | 2 cut(s) | 131, 664 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 593 |
| BstNI | CCWGG | 1 cut(s) | 89 |
| BstNSI | RCATGY | 1 cut(s) | 556 |
| BstSCI | CCNGG | 2 cut(s) | 39, 87 |
| BstSFI | CTRYAG | 2 cut(s) | 262, 393 |
| BstUI | CGCG | 5 cut(s) | 207, 237, 253, 298, 306 |
| BstV1I | GCAGC | 5 cut(s) | 42, 238, 276, 374, 706 |
| BstX2I | RGATCY | 1 cut(s) | 664 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 88 |
| BstYI | RGATCY | 1 cut(s) | 664 |
| BsuI | GTATCC | 1 cut(s) | 464 |
| BsuRI | GGCC | 4 cut(s) | 44, 179, 210, 301 |
| BtgZI | GCGATG | 1 cut(s) | 757 |
| BtrI | CACGTC | 1 cut(s) | 634 |
| BtsCI | GGATG | 7 cut(s) | 199, 218, 256, 290, 309, 376, 531 |
| BtuMI | TCGCGA | 3 cut(s) | 237, 253, 306 |
| BveI | ACCTGC | 1 cut(s) | 125 |
| Cac8I | GCNNGC | 1 cut(s) | 570 |
| CciI | TCATGA | 1 cut(s) | 612 |
| CfoI | GCGC | 2 cut(s) | 467, 498 |
| Cfr13I | GGNCC | 2 cut(s) | 178, 484 |
| CseI | GACGC | 1 cut(s) | 354 |
| CviAII | CATG | 3 cut(s) | 553, 613, 625 |
| DdeI | CTNAG | 1 cut(s) | 172 |
| DpnI | GATC | 2 cut(s) | 133, 666 |
| DpnII | GATC | 2 cut(s) | 131, 664 |
| EaeI | YGGCCR | 1 cut(s) | 42 |
| Eam1104I | CTCTTC | 2 cut(s) | 11, 41 |
| EarI | CTCTTC | 2 cut(s) | 11, 41 |
| Eco130I | CCWWGG | 1 cut(s) | 11 |
| Eco47I | GGWCC | 1 cut(s) | 484 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 656 |
| EcoRI | GAATTC | 1 cut(s) | 437 |
| EcoRII | CCWGG | 1 cut(s) | 87 |
| EcoT14I | CCWWGG | 1 cut(s) | 11 |
| ErhI | CCWWGG | 1 cut(s) | 11 |
| FaeI | CATG | 3 cut(s) | 556, 616, 628 |
| FaiI | YATR | 7 cut(s) | 477, 554, 614, 626, 679, 750, 789 |
| FaqI | GGGAC | 2 cut(s) | 105, 255 |
| FatI | CATG | 3 cut(s) | 552, 612, 624 |
| FauI | CCCGC | 5 cut(s) | 60, 118, 189, 231, 322 |
| Fnu4HI | GCNGC | 9 cut(s) | 56, 177, 208, 227, 265, 299, 352, 363, 695 |
| FokI | GGATG | 7 cut(s) | 186, 205, 243, 277, 296, 363, 518 |
| Fsp4HI | GCNGC | 9 cut(s) | 56, 177, 208, 227, 265, 299, 352, 363, 695 |
| FspBI | CTAG | 3 cut(s) | 12, 129, 543 |
| GlaI | GCGC | 2 cut(s) | 466, 497 |
| GluI | GCNGC | 9 cut(s) | 56, 177, 208, 227, 265, 299, 352, 363, 695 |
| GsaI | CCCAGC | 1 cut(s) | 416 |
| HaeII | RGCGCY | 1 cut(s) | 468 |
| HaeIII | GGCC | 4 cut(s) | 44, 179, 210, 301 |
| HapII | CCGG | 2 cut(s) | 41, 429 |
| HgaI | GACGC | 1 cut(s) | 354 |
| HhaI | GCGC | 2 cut(s) | 467, 498 |
| Hin1II | CATG | 3 cut(s) | 556, 616, 628 |
| Hin6I | GCGC | 2 cut(s) | 465, 496 |
| HinP1I | GCGC | 2 cut(s) | 465, 496 |
| HinfI | GANTC | 2 cut(s) | 343, 716 |
| HpaII | CCGG | 2 cut(s) | 41, 429 |
| HphI | GGTGA | 2 cut(s) | 58, 98 |
| Hpy188I | TCNGA | 3 cut(s) | 488, 796, 819 |
| HpyAV | CCTTC | 1 cut(s) | 812 |
| HpyCH4III | ACNGT | 2 cut(s) | 70, 577 |
| HpyCH4IV | ACGT | 2 cut(s) | 633, 708 |
| HpyCH4V | TGCA | 2 cut(s) | 264, 395 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 593 |
| HpyF3I | CTNAG | 1 cut(s) | 172 |
| HpySE526I | ACGT | 2 cut(s) | 633, 708 |
| Hsp92II | CATG | 3 cut(s) | 556, 616, 628 |
| HspAI | GCGC | 2 cut(s) | 465, 496 |
| Kzo9I | GATC | 2 cut(s) | 131, 664 |
| LguI | GCTCTTC | 1 cut(s) | 11 |
| LmnI | GCTCC | 1 cut(s) | 642 |
| Lsp1109I | GCAGC | 5 cut(s) | 42, 238, 276, 374, 706 |
| LweI | GCATC | 4 cut(s) | 299, 341, 363, 454 |
| MaeI | CTAG | 3 cut(s) | 12, 129, 543 |
| MaeII | ACGT | 2 cut(s) | 633, 708 |
| MaeIII | GTNAC | 3 cut(s) | 161, 275, 713 |
| MalI | GATC | 2 cut(s) | 133, 666 |
| MboI | GATC | 2 cut(s) | 131, 664 |
| MboII | GAAGA | 1 cut(s) | 28 |
| MflI | RGATCY | 1 cut(s) | 664 |
| MhlI | GDGCHC | 1 cut(s) | 639 |
| MluCI | AATT | 2 cut(s) | 421, 437 |
| MlyI | GAGTC | 2 cut(s) | 352, 710 |
| MroXI | GAANNNNTTC | 1 cut(s) | 801 |
| MseI | TTAA | 1 cut(s) | 507 |
| MslI | CAYNNNNRTG | 3 cut(s) | 68, 611, 627 |
| MspA1I | CMGCKG | 2 cut(s) | 55, 176 |
| MspCI | CTTAAG | 1 cut(s) | 506 |
| MspI | CCGG | 2 cut(s) | 41, 429 |
| MspR9I | CCNGG | 2 cut(s) | 41, 89 |
| Mva1269I | GAATGC | 1 cut(s) | 229 |
| MvaI | CCWGG | 1 cut(s) | 89 |
| MvnI | CGCG | 5 cut(s) | 207, 237, 253, 298, 306 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 593 |
| NciI | CCSGG | 1 cut(s) | 41 |
| NdeII | GATC | 2 cut(s) | 131, 664 |
| NlaIII | CATG | 3 cut(s) | 556, 616, 628 |
| NlaIV | GGNNCC | 3 cut(s) | 180, 485, 666 |
| NmuCI | GTSAC | 3 cut(s) | 161, 275, 713 |
| NruI | TCGCGA | 3 cut(s) | 237, 253, 306 |
| NspI | RCATGY | 1 cut(s) | 556 |
| PagI | TCATGA | 1 cut(s) | 612 |
| PciSI | GCTCTTC | 1 cut(s) | 11 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 379 |
| PctI | GAATGC | 1 cut(s) | 229 |
| PdmI | GAANNNNTTC | 1 cut(s) | 801 |
| PkrI | GCNGC | 9 cut(s) | 57, 178, 209, 228, 266, 300, 353, 364, 696 |
| PleI | GAGTC | 2 cut(s) | 351, 710 |
| PpsI | GAGTC | 2 cut(s) | 351, 710 |
| PsiI | TTATAA | 1 cut(s) | 789 |
| Psp1406I | AACGTT | 1 cut(s) | 708 |
| Psp6I | CCWGG | 1 cut(s) | 87 |
| PspFI | CCCAGC | 1 cut(s) | 412 |
| PspGI | CCWGG | 1 cut(s) | 87 |
| PspN4I | GGNNCC | 3 cut(s) | 180, 485, 666 |
| PspPI | GGNCC | 2 cut(s) | 178, 484 |
| PstI | CTGCAG | 2 cut(s) | 266, 397 |
| PsuI | RGATCY | 1 cut(s) | 664 |
| RruI | TCGCGA | 3 cut(s) | 237, 253, 306 |
| RseI | CAYNNNNRTG | 3 cut(s) | 68, 611, 627 |
| SapI | GCTCTTC | 1 cut(s) | 11 |
| SaqAI | TTAA | 1 cut(s) | 507 |
| SatI | GCNGC | 9 cut(s) | 56, 177, 208, 227, 265, 299, 352, 363, 695 |
| Sau3AI | GATC | 2 cut(s) | 131, 664 |
| Sau96I | GGNCC | 2 cut(s) | 178, 484 |
| SchI | GAGTC | 2 cut(s) | 352, 710 |
| ScrFI | CCNGG | 2 cut(s) | 41, 89 |
| SduI | GDGCHC | 1 cut(s) | 639 |
| SfaNI | GCATC | 4 cut(s) | 299, 341, 363, 454 |
| SfcI | CTRYAG | 2 cut(s) | 262, 393 |
| SinI | GGWCC | 1 cut(s) | 484 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 68, 611, 627 |
| SmlI | CTYRAG | 2 cut(s) | 506, 689 |
| SmoI | CTYRAG | 2 cut(s) | 506, 689 |
| Sse9I | AATT | 2 cut(s) | 421, 437 |
| SspMI | CTAG | 3 cut(s) | 12, 129, 543 |
| StyD4I | CCNGG | 2 cut(s) | 39, 87 |
| StyI | CCWWGG | 1 cut(s) | 11 |
| TaaI | ACNGT | 2 cut(s) | 70, 577 |
| TaiI | ACGT | 2 cut(s) | 636, 711 |
| TaqI | TCGA | 2 cut(s) | 125, 373 |
| TasI | AATT | 2 cut(s) | 421, 437 |
| TauI | GCSGC | 4 cut(s) | 179, 210, 301, 354 |
| Tru1I | TTAA | 1 cut(s) | 507 |
| Tru9I | TTAA | 1 cut(s) | 507 |
| TseFI | GTSAC | 3 cut(s) | 161, 275, 713 |
| TseI | GCWGC | 5 cut(s) | 55, 226, 264, 362, 694 |
| Tsp45I | GTSAC | 3 cut(s) | 161, 275, 713 |
| TspDTI | ATGAA | 1 cut(s) | 641 |
| Vha464I | CTTAAG | 1 cut(s) | 506 |
| VpaK11BI | GGWCC | 1 cut(s) | 484 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 656 |
| XapI | RAATTY | 1 cut(s) | 437 |
| XceI | RCATGY | 1 cut(s) | 556 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 675 |
| XmaJI | CCTAGG | 1 cut(s) | 11 |
| XmnI | GAANNNNTTC | 1 cut(s) | 801 |
| XspI | CTAG | 3 cut(s) | 12, 129, 543 |