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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 154 |
| Acc36I | ACCTGC | 2 cut(s) | 154, 628 |
| AccB1I | GGYRCC | 1 cut(s) | 325 |
| AccII | CGCG | 2 cut(s) | 128, 269 |
| AciI | CCGC | 3 cut(s) | 126, 178, 698 |
| AclWI | GGATC | 3 cut(s) | 345, 584, 783 |
| AcoI | YGGCCR | 1 cut(s) | 214 |
| AcsI | RAATTY | 1 cut(s) | 306 |
| AcyI | GRCGYC | 1 cut(s) | 394 |
| AfaI | GTAC | 2 cut(s) | 96, 693 |
| AfeI | AGCGCT | 2 cut(s) | 462, 473 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 659 |
| AflIII | ACRYGT | 1 cut(s) | 288 |
| AgeI | ACCGGT | 1 cut(s) | 242 |
| AgsI | TTSAA | 8 cut(s) | 92, 349, 511, 518, 547, 730, 745, 799 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 547 |
| AhlI | ACTAGT | 1 cut(s) | 686 |
| AjiI | CACGTC | 1 cut(s) | 703 |
| AjnI | CCWGG | 2 cut(s) | 321, 791 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 459, 491 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 329, 361 |
| AluBI | AGCT | 2 cut(s) | 56, 451 |
| AluI | AGCT | 2 cut(s) | 56, 451 |
| Alw26I | GTCTC | 1 cut(s) | 709 |
| AlwI | GGATC | 3 cut(s) | 345, 584, 783 |
| Aor51HI | AGCGCT | 2 cut(s) | 462, 473 |
| AoxI | GGCC | 5 cut(s) | 168, 214, 218, 248, 769 |
| ApeKI | GCWGC | 3 cut(s) | 276, 279, 623 |
| ApoI | RAATTY | 1 cut(s) | 306 |
| AsiGI | ACCGGT | 1 cut(s) | 242 |
| AspLEI | GCGC | 5 cut(s) | 130, 264, 463, 474, 534 |
| AspS9I | GGNCC | 1 cut(s) | 169 |
| AsuC2I | CCSGG | 1 cut(s) | 335 |
| AsuHPI | GGTGA | 4 cut(s) | 197, 202, 227, 232 |
| BanI | GGYRCC | 1 cut(s) | 325 |
| BbvCI | CCTCAGC | 2 cut(s) | 198, 222 |
| BbvI | GCAGC | 3 cut(s) | 288, 291, 610 |
| BccI | CCATC | 2 cut(s) | 71, 161 |
| BceAI | ACGGC | 1 cut(s) | 101 |
| BciT130I | CCWGG | 2 cut(s) | 323, 793 |
| BcnI | CCSGG | 1 cut(s) | 335 |
| BcoDI | GTCTC | 1 cut(s) | 709 |
| BcuI | ACTAGT | 1 cut(s) | 686 |
| BfaI | CTAG | 2 cut(s) | 464, 687 |
| BfmI | CTRYAG | 1 cut(s) | 274 |
| BfoI | RGCGCY | 3 cut(s) | 265, 464, 475 |
| BfuAI | ACCTGC | 2 cut(s) | 154, 628 |
| BglII | AGATCT | 1 cut(s) | 669 |
| BisI | GCNGC | 4 cut(s) | 178, 277, 280, 624 |
| BlsI | GCNGC | 4 cut(s) | 179, 278, 281, 625 |
| Bme1390I | CCNGG | 3 cut(s) | 323, 335, 793 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 547 |
| BmgBI | CACGTC | 1 cut(s) | 703 |
| BmgT120I | GGNCC | 1 cut(s) | 169 |
| BmiI | GGNNCC | 1 cut(s) | 327 |
| BmrFI | CCNGG | 3 cut(s) | 323, 335, 793 |
| BmsI | GCATC | 3 cut(s) | 170, 378, 774 |
| Bpu10I | CCTNAGC | 2 cut(s) | 198, 222 |
| BpuEI | CTTGAG | 1 cut(s) | 357 |
| BpuMI | CCSGG | 1 cut(s) | 335 |
| BsaHI | GRCGYC | 1 cut(s) | 394 |
| BsaI | GGTCTC | 1 cut(s) | 709 |
| BsaWI | WCCGGW | 1 cut(s) | 242 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 413, 443 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 659 |
| Bse118I | RCCGGY | 3 cut(s) | 212, 216, 242 |
| Bse3DI | GCAATG | 1 cut(s) | 487 |
| BseBI | CCWGG | 2 cut(s) | 323, 793 |
| BseGI | GGATG | 2 cut(s) | 153, 182 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 659 |
| BseMI | GCAATG | 1 cut(s) | 487 |
| BseMII | CTCAG | 3 cut(s) | 212, 236, 427 |
| BseRI | GAGGAG | 2 cut(s) | 243, 488 |
| BseX3I | CGGCCG | 1 cut(s) | 214 |
| BseXI | GCAGC | 3 cut(s) | 288, 291, 610 |
| BseYI | CCCAGC | 1 cut(s) | 258 |
| BsgI | GTGCAG | 1 cut(s) | 126 |
| Bsh1236I | CGCG | 2 cut(s) | 128, 269 |
| Bsh1285I | CGRYCG | 2 cut(s) | 217, 247 |
| BshFI | GGCC | 5 cut(s) | 170, 216, 220, 250, 771 |
| BshNI | GGYRCC | 1 cut(s) | 325 |
| BshTI | ACCGGT | 1 cut(s) | 242 |
| BsiEI | CGRYCG | 2 cut(s) | 217, 247 |
| BsiSI | CCGG | 4 cut(s) | 213, 217, 243, 335 |
| BslFI | GGGAC | 2 cut(s) | 554, 635 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 659 |
| BsmAI | GTCTC | 1 cut(s) | 709 |
| BsmFI | GGGAC | 2 cut(s) | 554, 635 |
| BsmI | GAATGC | 2 cut(s) | 445, 754 |
| BsnI | GGCC | 5 cut(s) | 170, 216, 220, 250, 771 |
| Bso31I | GGTCTC | 1 cut(s) | 709 |
| Bsp1407I | TGTACA | 1 cut(s) | 691 |
| Bsp143I | GATC | 7 cut(s) | 25, 270, 337, 432, 589, 669, 788 |
| Bsp68I | TCGCGA | 1 cut(s) | 269 |
| BspACI | CCGC | 3 cut(s) | 126, 178, 698 |
| BspANI | GGCC | 5 cut(s) | 170, 216, 220, 250, 771 |
| BspCNI | CTCAG | 3 cut(s) | 211, 235, 426 |
| BspFNI | CGCG | 2 cut(s) | 128, 269 |
| BspLI | GGNNCC | 1 cut(s) | 327 |
| BspMAI | CTGCAG | 1 cut(s) | 278 |
| BspMI | ACCTGC | 2 cut(s) | 154, 628 |
| BspPI | GGATC | 3 cut(s) | 345, 584, 783 |
| BspQI | GCTCTTC | 1 cut(s) | 462 |
| BspT107I | GGYRCC | 1 cut(s) | 325 |
| BspTNI | GGTCTC | 1 cut(s) | 709 |
| BsrDI | GCAATG | 1 cut(s) | 487 |
| BsrFI | RCCGGY | 3 cut(s) | 212, 216, 242 |
| BsrGI | TGTACA | 1 cut(s) | 691 |
| BssAI | RCCGGY | 3 cut(s) | 212, 216, 242 |
| BssMI | GATC | 7 cut(s) | 25, 270, 337, 432, 589, 669, 788 |
| BssNI | GRCGYC | 1 cut(s) | 394 |
| Bst2UI | CCWGG | 2 cut(s) | 323, 793 |
| Bst6I | CTCTTC | 1 cut(s) | 462 |
| BstACI | GRCGYC | 1 cut(s) | 394 |
| BstAUI | TGTACA | 1 cut(s) | 691 |
| BstC8I | GCNNGC | 3 cut(s) | 168, 218, 369 |
| BstDEI | CTNAG | 3 cut(s) | 198, 222, 413 |
| BstF5I | GGATG | 2 cut(s) | 153, 182 |
| BstFNI | CGCG | 2 cut(s) | 128, 269 |
| BstH2I | RGCGCY | 3 cut(s) | 265, 464, 475 |
| BstHHI | GCGC | 5 cut(s) | 130, 264, 463, 474, 534 |
| BstKTI | GATC | 7 cut(s) | 28, 273, 340, 435, 592, 672, 791 |
| BstMAI | GTCTC | 1 cut(s) | 709 |
| BstMBI | GATC | 7 cut(s) | 25, 270, 337, 432, 589, 669, 788 |
| BstMCI | CGRYCG | 2 cut(s) | 217, 247 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 167, 469 |
| BstNI | CCWGG | 2 cut(s) | 323, 793 |
| BstNSI | RCATGY | 4 cut(s) | 40, 371, 634, 698 |
| BstSCI | CCNGG | 3 cut(s) | 321, 333, 791 |
| BstSFI | CTRYAG | 1 cut(s) | 274 |
| BstUI | CGCG | 2 cut(s) | 128, 269 |
| BstV1I | GCAGC | 3 cut(s) | 288, 291, 610 |
| BstX2I | RGATCY | 2 cut(s) | 337, 669 |
| BstYI | RGATCY | 2 cut(s) | 337, 669 |
| BstZI | CGGCCG | 1 cut(s) | 214 |
| BsuRI | GGCC | 5 cut(s) | 170, 216, 220, 250, 771 |
| BtgZI | GCGATG | 1 cut(s) | 147 |
| BtrI | CACGTC | 1 cut(s) | 703 |
| BtsCI | GGATG | 2 cut(s) | 153, 182 |
| BtsI | GCAGTG | 1 cut(s) | 172 |
| BtsIMutI | CAGTG | 1 cut(s) | 172 |
| BtuMI | TCGCGA | 1 cut(s) | 269 |
| BveI | ACCTGC | 2 cut(s) | 154, 628 |
| Cac8I | GCNNGC | 3 cut(s) | 168, 218, 369 |
| CfoI | GCGC | 5 cut(s) | 130, 264, 463, 474, 534 |
| Cfr10I | RCCGGY | 3 cut(s) | 212, 216, 242 |
| Cfr13I | GGNCC | 1 cut(s) | 169 |
| CseI | GACGC | 2 cut(s) | 138, 402 |
| Csp6I | GTAC | 2 cut(s) | 95, 692 |
| CspAI | ACCGGT | 1 cut(s) | 242 |
| CviAII | CATG | 6 cut(s) | 37, 98, 368, 631, 665, 695 |
| CviQI | GTAC | 2 cut(s) | 95, 692 |
| DdeI | CTNAG | 3 cut(s) | 198, 222, 413 |
| DpnI | GATC | 7 cut(s) | 27, 272, 339, 434, 591, 671, 790 |
| DpnII | GATC | 7 cut(s) | 25, 270, 337, 432, 589, 669, 788 |
| DriI | GACNNNNNGTC | 1 cut(s) | 547 |
| EaeI | YGGCCR | 1 cut(s) | 214 |
| EagI | CGGCCG | 1 cut(s) | 214 |
| Eam1104I | CTCTTC | 1 cut(s) | 462 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 547 |
| EarI | CTCTTC | 1 cut(s) | 462 |
| EclXI | CGGCCG | 1 cut(s) | 214 |
| Eco31I | GGTCTC | 1 cut(s) | 709 |
| Eco47III | AGCGCT | 2 cut(s) | 462, 473 |
| Eco52I | CGGCCG | 1 cut(s) | 214 |
| EcoRII | CCWGG | 2 cut(s) | 321, 791 |
| FaeI | CATG | 6 cut(s) | 40, 101, 371, 634, 668, 698 |
| FaqI | GGGAC | 2 cut(s) | 554, 635 |
| FatI | CATG | 6 cut(s) | 36, 97, 367, 630, 664, 694 |
| FauI | CCCGC | 1 cut(s) | 133 |
| FauNDI | CATATG | 1 cut(s) | 399 |
| Fnu4HI | GCNGC | 4 cut(s) | 178, 277, 280, 624 |
| FokI | GGATG | 2 cut(s) | 140, 169 |
| FseI | GGCCGGCC | 1 cut(s) | 220 |
| Fsp4HI | GCNGC | 4 cut(s) | 178, 277, 280, 624 |
| FspBI | CTAG | 2 cut(s) | 464, 687 |
| GlaI | GCGC | 5 cut(s) | 129, 263, 462, 473, 533 |
| GluI | GCNGC | 4 cut(s) | 178, 277, 280, 624 |
| GsaI | CCCAGC | 1 cut(s) | 262 |
| HaeII | RGCGCY | 3 cut(s) | 265, 464, 475 |
| HaeIII | GGCC | 5 cut(s) | 170, 216, 220, 250, 771 |
| HapII | CCGG | 4 cut(s) | 213, 217, 243, 335 |
| HgaI | GACGC | 2 cut(s) | 138, 402 |
| HhaI | GCGC | 5 cut(s) | 130, 264, 463, 474, 534 |
| Hin1I | GRCGYC | 1 cut(s) | 394 |
| Hin1II | CATG | 6 cut(s) | 40, 101, 371, 634, 668, 698 |
| Hin6I | GCGC | 5 cut(s) | 128, 262, 461, 472, 532 |
| HinP1I | GCGC | 5 cut(s) | 128, 262, 461, 472, 532 |
| HincII | GTYRAC | 1 cut(s) | 83 |
| HindII | GTYRAC | 1 cut(s) | 83 |
| HinfI | GANTC | 2 cut(s) | 491, 805 |
| HpaII | CCGG | 4 cut(s) | 213, 217, 243, 335 |
| HphI | GGTGA | 4 cut(s) | 197, 202, 227, 232 |
| Hpy166II | GTNNAC | 2 cut(s) | 83, 692 |
| Hpy188I | TCNGA | 2 cut(s) | 416, 553 |
| Hpy188III | TCNNGA | 4 cut(s) | 268, 385, 436, 587 |
| Hpy8I | GTNNAC | 2 cut(s) | 83, 692 |
| Hpy99I | CGWCG | 1 cut(s) | 396 |
| HpyAV | CCTTC | 2 cut(s) | 100, 505 |
| HpyCH4IV | ACGT | 3 cut(s) | 290, 702, 756 |
| HpyCH4V | TGCA | 5 cut(s) | 143, 161, 276, 443, 626 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 167, 469 |
| HpyF3I | CTNAG | 3 cut(s) | 198, 222, 413 |
| HpySE526I | ACGT | 3 cut(s) | 290, 702, 756 |
| Hsp92I | GRCGYC | 1 cut(s) | 394 |
| Hsp92II | CATG | 6 cut(s) | 40, 101, 371, 634, 668, 698 |
| HspAI | GCGC | 5 cut(s) | 128, 262, 461, 472, 532 |
| KroI | GCCGGC | 1 cut(s) | 216 |
| KroNI | GCCGGC | 1 cut(s) | 218 |
| Kzo9I | GATC | 7 cut(s) | 25, 270, 337, 432, 589, 669, 788 |
| LguI | GCTCTTC | 1 cut(s) | 462 |
| Lsp1109I | GCAGC | 3 cut(s) | 288, 291, 610 |
| LweI | GCATC | 3 cut(s) | 170, 378, 774 |
| MaeI | CTAG | 2 cut(s) | 464, 687 |
| MaeII | ACGT | 3 cut(s) | 290, 702, 756 |
| MaeIII | GTNAC | 1 cut(s) | 601 |
| MalI | GATC | 7 cut(s) | 27, 272, 339, 434, 591, 671, 790 |
| MboI | GATC | 7 cut(s) | 25, 270, 337, 432, 589, 669, 788 |
| MboII | GAAGA | 2 cut(s) | 479, 757 |
| MfeI | CAATTG | 1 cut(s) | 87 |
| MflI | RGATCY | 2 cut(s) | 337, 669 |
| MluCI | AATT | 6 cut(s) | 87, 306, 554, 707, 765, 799 |
| MroNI | GCCGGC | 1 cut(s) | 216 |
| MspI | CCGG | 4 cut(s) | 213, 217, 243, 335 |
| MspR9I | CCNGG | 3 cut(s) | 323, 335, 793 |
| MunI | CAATTG | 1 cut(s) | 87 |
| Mva1269I | GAATGC | 2 cut(s) | 445, 754 |
| MvaI | CCWGG | 2 cut(s) | 323, 793 |
| MvnI | CGCG | 2 cut(s) | 128, 269 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 167, 469 |
| NaeI | GCCGGC | 1 cut(s) | 218 |
| NciI | CCSGG | 1 cut(s) | 335 |
| NdeI | CATATG | 1 cut(s) | 399 |
| NdeII | GATC | 7 cut(s) | 25, 270, 337, 432, 589, 669, 788 |
| NgoMIV | GCCGGC | 1 cut(s) | 216 |
| NlaIII | CATG | 6 cut(s) | 40, 101, 371, 634, 668, 698 |
| NlaIV | GGNNCC | 1 cut(s) | 327 |
| NmuCI | GTSAC | 1 cut(s) | 601 |
| NruI | TCGCGA | 1 cut(s) | 269 |
| NspI | RCATGY | 4 cut(s) | 40, 371, 634, 698 |
| PaeI | GCATGC | 1 cut(s) | 371 |
| PaqCI | CACCTGC | 1 cut(s) | 154 |
| PciSI | GCTCTTC | 1 cut(s) | 462 |
| PctI | GAATGC | 2 cut(s) | 445, 754 |
| PdiI | GCCGGC | 1 cut(s) | 218 |
| PfeI | GAWTC | 2 cut(s) | 491, 805 |
| PinAI | ACCGGT | 1 cut(s) | 242 |
| PkrI | GCNGC | 4 cut(s) | 179, 278, 281, 625 |
| Psp6I | CCWGG | 2 cut(s) | 321, 791 |
| PspFI | CCCAGC | 1 cut(s) | 258 |
| PspGI | CCWGG | 2 cut(s) | 321, 791 |
| PspN4I | GGNNCC | 1 cut(s) | 327 |
| PspPI | GGNCC | 1 cut(s) | 169 |
| PstI | CTGCAG | 1 cut(s) | 278 |
| PsuI | RGATCY | 2 cut(s) | 337, 669 |
| RigI | GGCCGGCC | 1 cut(s) | 220 |
| RruI | TCGCGA | 1 cut(s) | 269 |
| RsaI | GTAC | 2 cut(s) | 96, 693 |
| RsaNI | GTAC | 2 cut(s) | 95, 692 |
| SapI | GCTCTTC | 1 cut(s) | 462 |
| SatI | GCNGC | 4 cut(s) | 178, 277, 280, 624 |
| Sau3AI | GATC | 7 cut(s) | 25, 270, 337, 432, 589, 669, 788 |
| Sau96I | GGNCC | 1 cut(s) | 169 |
| ScrFI | CCNGG | 3 cut(s) | 323, 335, 793 |
| SfaNI | GCATC | 3 cut(s) | 170, 378, 774 |
| SfcI | CTRYAG | 1 cut(s) | 274 |
| SmlI | CTYRAG | 1 cut(s) | 372 |
| SmoI | CTYRAG | 1 cut(s) | 372 |
| SpeI | ACTAGT | 1 cut(s) | 686 |
| SphI | GCATGC | 1 cut(s) | 371 |
| Sse9I | AATT | 6 cut(s) | 87, 306, 554, 707, 765, 799 |
| SsiI | CCGC | 3 cut(s) | 126, 178, 698 |
| SspMI | CTAG | 2 cut(s) | 464, 687 |
| StyD4I | CCNGG | 3 cut(s) | 321, 333, 791 |
| TaiI | ACGT | 3 cut(s) | 293, 705, 759 |
| TaqI | TCGA | 1 cut(s) | 431 |
| TasI | AATT | 6 cut(s) | 87, 306, 554, 707, 765, 799 |
| TatI | WGTACW | 2 cut(s) | 94, 691 |
| TauI | GCSGC | 1 cut(s) | 180 |
| TfiI | GAWTC | 2 cut(s) | 491, 805 |
| TscAI | CASTG | 1 cut(s) | 179 |
| TseFI | GTSAC | 1 cut(s) | 601 |
| TseI | GCWGC | 3 cut(s) | 276, 279, 623 |
| Tsp45I | GTSAC | 1 cut(s) | 601 |
| TspDTI | ATGAA | 1 cut(s) | 74 |
| TspGWI | ACGGA | 1 cut(s) | 182 |
| TspRI | CASTG | 1 cut(s) | 179 |
| XapI | RAATTY | 1 cut(s) | 306 |
| XceI | RCATGY | 4 cut(s) | 40, 371, 634, 698 |
| XspI | CTAG | 2 cut(s) | 464, 687 |