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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 366 |
| AccII | CGCG | 1 cut(s) | 351 |
| AccIII | TCCGGA | 2 cut(s) | 331, 401 |
| AciI | CCGC | 1 cut(s) | 585 |
| AclWI | GGATC | 2 cut(s) | 233, 303 |
| AcoI | YGGCCR | 1 cut(s) | 430 |
| AcsI | RAATTY | 1 cut(s) | 212 |
| AcyI | GRCGYC | 1 cut(s) | 367 |
| AdeI | CACNNNGTG | 1 cut(s) | 625 |
| AgsI | TTSAA | 2 cut(s) | 160, 481 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 5 cut(s) | 254, 297, 462, 566, 617 |
| AluI | AGCT | 5 cut(s) | 254, 297, 462, 566, 617 |
| Alw21I | GWGCWC | 1 cut(s) | 568 |
| Alw26I | GTCTC | 1 cut(s) | 76 |
| AlwI | GGATC | 2 cut(s) | 233, 303 |
| Aor13HI | TCCGGA | 2 cut(s) | 331, 401 |
| AoxI | GGCC | 1 cut(s) | 430 |
| ApoI | RAATTY | 1 cut(s) | 212 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspLEI | GCGC | 2 cut(s) | 353, 369 |
| AsuHPI | GGTGA | 1 cut(s) | 574 |
| BaeGI | GKGCMC | 1 cut(s) | 553 |
| BalI | TGGCCA | 1 cut(s) | 432 |
| BanI | GGYRCC | 1 cut(s) | 366 |
| BanII | GRGCYC | 1 cut(s) | 568 |
| BauI | CACGAG | 1 cut(s) | 567 |
| Bbv12I | GWGCWC | 1 cut(s) | 568 |
| BccI | CCATC | 1 cut(s) | 126 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 125, 159 |
| BciVI | GTATCC | 1 cut(s) | 388 |
| BcoDI | GTCTC | 1 cut(s) | 76 |
| BfaI | CTAG | 2 cut(s) | 122, 653 |
| BfoI | RGCGCY | 1 cut(s) | 370 |
| BfuI | GTATCC | 1 cut(s) | 388 |
| BmiI | GGNNCC | 2 cut(s) | 368, 445 |
| BpmI | CTGGAG | 1 cut(s) | 11 |
| BsaHI | GRCGYC | 1 cut(s) | 367 |
| BsaI | GGTCTC | 1 cut(s) | 76 |
| BsaJI | CCNNGG | 1 cut(s) | 312 |
| BsaWI | WCCGGW | 2 cut(s) | 331, 401 |
| Bse1I | ACTGG | 1 cut(s) | 28 |
| BseAI | TCCGGA | 2 cut(s) | 331, 401 |
| BseDI | CCNNGG | 1 cut(s) | 312 |
| BseGI | GGATG | 1 cut(s) | 22 |
| BseMII | CTCAG | 1 cut(s) | 495 |
| BseNI | ACTGG | 1 cut(s) | 28 |
| BseSI | GKGCMC | 1 cut(s) | 553 |
| Bsh1236I | CGCG | 1 cut(s) | 351 |
| BshFI | GGCC | 1 cut(s) | 432 |
| BshNI | GGYRCC | 1 cut(s) | 366 |
| BsiHKAI | GWGCWC | 1 cut(s) | 568 |
| BsiSI | CCGG | 2 cut(s) | 332, 402 |
| BsmAI | GTCTC | 1 cut(s) | 76 |
| BsnI | GGCC | 1 cut(s) | 432 |
| Bso31I | GGTCTC | 1 cut(s) | 76 |
| Bsp1286I | GDGCHC | 2 cut(s) | 553, 568 |
| Bsp13I | TCCGGA | 2 cut(s) | 331, 401 |
| Bsp143I | GATC | 4 cut(s) | 225, 308, 637, 649 |
| Bsp19I | CCATGG | 1 cut(s) | 312 |
| BspACI | CCGC | 1 cut(s) | 585 |
| BspANI | GGCC | 1 cut(s) | 432 |
| BspCNI | CTCAG | 1 cut(s) | 496 |
| BspEI | TCCGGA | 2 cut(s) | 331, 401 |
| BspFNI | CGCG | 1 cut(s) | 351 |
| BspHI | TCATGA | 2 cut(s) | 238, 640 |
| BspLI | GGNNCC | 2 cut(s) | 368, 445 |
| BspPI | GGATC | 2 cut(s) | 233, 303 |
| BspT107I | GGYRCC | 1 cut(s) | 366 |
| BspTNI | GGTCTC | 1 cut(s) | 76 |
| BsrI | ACTGG | 1 cut(s) | 28 |
| BssECI | CCNNGG | 1 cut(s) | 312 |
| BssMI | GATC | 4 cut(s) | 225, 308, 637, 649 |
| BssNI | GRCGYC | 1 cut(s) | 367 |
| BssSI | CACGAG | 1 cut(s) | 567 |
| BssT1I | CCWWGG | 1 cut(s) | 312 |
| Bst2BI | CACGAG | 1 cut(s) | 567 |
| BstACI | GRCGYC | 1 cut(s) | 367 |
| BstDEI | CTNAG | 5 cut(s) | 357, 389, 411, 456, 504 |
| BstDSI | CCRYGG | 1 cut(s) | 312 |
| BstF5I | GGATG | 1 cut(s) | 22 |
| BstFNI | CGCG | 1 cut(s) | 351 |
| BstH2I | RGCGCY | 1 cut(s) | 370 |
| BstHHI | GCGC | 2 cut(s) | 353, 369 |
| BstKTI | GATC | 4 cut(s) | 228, 311, 640, 652 |
| BstMAI | GTCTC | 1 cut(s) | 76 |
| BstMBI | GATC | 4 cut(s) | 225, 308, 637, 649 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 373, 482, 593, 614 |
| BstSLI | GKGCMC | 1 cut(s) | 553 |
| BstUI | CGCG | 1 cut(s) | 351 |
| BstX2I | RGATCY | 1 cut(s) | 308 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 440 |
| BstYI | RGATCY | 1 cut(s) | 308 |
| BsuI | GTATCC | 1 cut(s) | 388 |
| BsuRI | GGCC | 1 cut(s) | 432 |
| BtgI | CCRYGG | 1 cut(s) | 312 |
| BtsCI | GGATG | 1 cut(s) | 22 |
| CciI | TCATGA | 2 cut(s) | 238, 640 |
| CfoI | GCGC | 2 cut(s) | 353, 369 |
| CseI | GACGC | 2 cut(s) | 414, 482 |
| CviAII | CATG | 5 cut(s) | 239, 275, 313, 434, 641 |
| CviJI | RGCY | 9 cut(s) | 64, 141, 254, 297, 432, 444, 462, 566, 617 |
| CviKI_1 | RGCY | 9 cut(s) | 64, 141, 254, 297, 432, 444, 462, 566, 617 |
| DdeI | CTNAG | 5 cut(s) | 357, 389, 411, 456, 504 |
| DinI | GGCGCC | 1 cut(s) | 368 |
| DpnI | GATC | 4 cut(s) | 227, 310, 639, 651 |
| DpnII | GATC | 4 cut(s) | 225, 308, 637, 649 |
| DraIII | CACNNNGTG | 1 cut(s) | 625 |
| EaeI | YGGCCR | 1 cut(s) | 430 |
| Ecl136II | GAGCTC | 1 cut(s) | 566 |
| Eco130I | CCWWGG | 1 cut(s) | 312 |
| Eco24I | GRGCYC | 1 cut(s) | 568 |
| Eco31I | GGTCTC | 1 cut(s) | 76 |
| Eco53kI | GAGCTC | 1 cut(s) | 566 |
| EcoICRI | GAGCTC | 1 cut(s) | 566 |
| EcoT14I | CCWWGG | 1 cut(s) | 312 |
| EcoT38I | GRGCYC | 1 cut(s) | 568 |
| EgeI | GGCGCC | 1 cut(s) | 368 |
| EheI | GGCGCC | 1 cut(s) | 368 |
| ErhI | CCWWGG | 1 cut(s) | 312 |
| FaeI | CATG | 5 cut(s) | 242, 278, 316, 437, 644 |
| FatI | CATG | 5 cut(s) | 238, 274, 312, 433, 640 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| FokI | GGATG | 1 cut(s) | 29 |
| FriOI | GRGCYC | 1 cut(s) | 568 |
| FspBI | CTAG | 2 cut(s) | 122, 653 |
| GlaI | GCGC | 2 cut(s) | 352, 368 |
| GsuI | CTGGAG | 1 cut(s) | 11 |
| HaeII | RGCGCY | 1 cut(s) | 370 |
| HaeIII | GGCC | 1 cut(s) | 432 |
| HapII | CCGG | 2 cut(s) | 332, 402 |
| HgaI | GACGC | 2 cut(s) | 414, 482 |
| HhaI | GCGC | 2 cut(s) | 353, 369 |
| Hin1I | GRCGYC | 1 cut(s) | 367 |
| Hin1II | CATG | 5 cut(s) | 242, 278, 316, 437, 644 |
| Hin6I | GCGC | 2 cut(s) | 351, 367 |
| HinP1I | GCGC | 2 cut(s) | 351, 367 |
| HinfI | GANTC | 6 cut(s) | 4, 20, 104, 335, 500, 536 |
| HpaII | CCGG | 2 cut(s) | 332, 402 |
| HphI | GGTGA | 1 cut(s) | 574 |
| Hpy166II | GTNNAC | 1 cut(s) | 221 |
| Hpy188I | TCNGA | 2 cut(s) | 184, 505 |
| Hpy8I | GTNNAC | 1 cut(s) | 221 |
| HpyAV | CCTTC | 3 cut(s) | 54, 152, 357 |
| HpyCH4IV | ACGT | 1 cut(s) | 96 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 373, 482, 593, 614 |
| HpyF3I | CTNAG | 5 cut(s) | 357, 389, 411, 456, 504 |
| HpySE526I | ACGT | 1 cut(s) | 96 |
| Hsp92I | GRCGYC | 1 cut(s) | 367 |
| Hsp92II | CATG | 5 cut(s) | 242, 278, 316, 437, 644 |
| HspAI | GCGC | 2 cut(s) | 351, 367 |
| KasI | GGCGCC | 1 cut(s) | 366 |
| Kpn2I | TCCGGA | 2 cut(s) | 331, 401 |
| Kzo9I | GATC | 4 cut(s) | 225, 308, 637, 649 |
| LmnI | GCTCC | 3 cut(s) | 30, 251, 449 |
| LpnPI | CCDG | 8 cut(s) | 41, 70, 122, 129, 345, 414, 415, 525 |
| MaeI | CTAG | 2 cut(s) | 122, 653 |
| MaeII | ACGT | 1 cut(s) | 96 |
| MaeIII | GTNAC | 2 cut(s) | 101, 580 |
| MalI | GATC | 4 cut(s) | 227, 310, 639, 651 |
| MboI | GATC | 4 cut(s) | 225, 308, 637, 649 |
| MboII | GAAGA | 6 cut(s) | 59, 62, 92, 584, 647, 656 |
| MflI | RGATCY | 1 cut(s) | 308 |
| MhlI | GDGCHC | 2 cut(s) | 553, 568 |
| MlsI | TGGCCA | 1 cut(s) | 432 |
| MluCI | AATT | 4 cut(s) | 212, 301, 340, 576 |
| MluNI | TGGCCA | 1 cut(s) | 432 |
| Mly113I | GGCGCC | 1 cut(s) | 367 |
| MlyI | GAGTC | 2 cut(s) | 98, 509 |
| MnlI | CCTC | 3 cut(s) | 410, 436, 498 |
| Mox20I | TGGCCA | 1 cut(s) | 432 |
| MroI | TCCGGA | 2 cut(s) | 331, 401 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MscI | TGGCCA | 1 cut(s) | 432 |
| MseI | TTAA | 2 cut(s) | 198, 206 |
| MslI | CAYNNNNRTG | 4 cut(s) | 15, 287, 438, 645 |
| Msp20I | TGGCCA | 1 cut(s) | 432 |
| MspI | CCGG | 2 cut(s) | 332, 402 |
| MvnI | CGCG | 1 cut(s) | 351 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 373, 482, 593, 614 |
| NarI | GGCGCC | 1 cut(s) | 367 |
| NcoI | CCATGG | 1 cut(s) | 312 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 4 cut(s) | 225, 308, 637, 649 |
| NlaIII | CATG | 5 cut(s) | 242, 278, 316, 437, 644 |
| NlaIV | GGNNCC | 2 cut(s) | 368, 445 |
| NmuCI | GTSAC | 2 cut(s) | 101, 580 |
| PagI | TCATGA | 2 cut(s) | 238, 640 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PfeI | GAWTC | 3 cut(s) | 20, 335, 536 |
| PleI | GAGTC | 2 cut(s) | 98, 508 |
| PluTI | GGCGCC | 1 cut(s) | 370 |
| PpsI | GAGTC | 2 cut(s) | 98, 508 |
| Psp124BI | GAGCTC | 1 cut(s) | 568 |
| PspN4I | GGNNCC | 2 cut(s) | 368, 445 |
| PsuI | RGATCY | 1 cut(s) | 308 |
| RseI | CAYNNNNRTG | 4 cut(s) | 15, 287, 438, 645 |
| SacI | GAGCTC | 1 cut(s) | 568 |
| SaqAI | TTAA | 2 cut(s) | 198, 206 |
| Sau3AI | GATC | 4 cut(s) | 225, 308, 637, 649 |
| SchI | GAGTC | 2 cut(s) | 98, 509 |
| SduI | GDGCHC | 2 cut(s) | 553, 568 |
| SetI | ASST | 9 cut(s) | 99, 123, 236, 256, 299, 464, 490, 568, 619 |
| SfoI | GGCGCC | 1 cut(s) | 368 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 15, 287, 438, 645 |
| Sse9I | AATT | 4 cut(s) | 212, 301, 340, 576 |
| SsiI | CCGC | 1 cut(s) | 585 |
| SspDI | GGCGCC | 1 cut(s) | 366 |
| SspI | AATATT | 1 cut(s) | 328 |
| SspMI | CTAG | 2 cut(s) | 122, 653 |
| SstI | GAGCTC | 1 cut(s) | 568 |
| StyI | CCWWGG | 1 cut(s) | 312 |
| TaiI | ACGT | 1 cut(s) | 99 |
| TaqI | TCGA | 3 cut(s) | 78, 305, 526 |
| TasI | AATT | 4 cut(s) | 212, 301, 340, 576 |
| TfiI | GAWTC | 3 cut(s) | 20, 335, 536 |
| Tru1I | TTAA | 2 cut(s) | 198, 206 |
| Tru9I | TTAA | 2 cut(s) | 198, 206 |
| TseFI | GTSAC | 2 cut(s) | 101, 580 |
| Tsp45I | GTSAC | 2 cut(s) | 101, 580 |
| TspDTI | ATGAA | 6 cut(s) | 56, 60, 227, 255, 272, 657 |
| TspGWI | ACGGA | 2 cut(s) | 89, 238 |
| XapI | RAATTY | 1 cut(s) | 212 |
| XbaI | TCTAGA | 1 cut(s) | 652 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 2 cut(s) | 122, 653 |