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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 402, 447 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 510 |
| Acc36I | ACCTGC | 1 cut(s) | 537 |
| AccB1I | GGYRCC | 2 cut(s) | 629, 650 |
| AccBSI | CCGCTC | 1 cut(s) | 475 |
| AciI | CCGC | 4 cut(s) | 304, 475, 544, 557 |
| AcvI | CACGTG | 1 cut(s) | 566 |
| AcyI | GRCGYC | 2 cut(s) | 7, 630 |
| AdeI | CACNNNGTG | 2 cut(s) | 569, 680 |
| AfeI | AGCGCT | 2 cut(s) | 75, 86 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 210, 461, 462, 532, 585, 664 |
| AflIII | ACRYGT | 3 cut(s) | 226, 563, 714 |
| AgsI | TTSAA | 4 cut(s) | 124, 131, 160, 408 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 227 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 4 cut(s) | 64, 188, 346, 368 |
| AluI | AGCT | 4 cut(s) | 64, 188, 346, 368 |
| Alw21I | GWGCWC | 1 cut(s) | 685 |
| Alw44I | GTGCAC | 1 cut(s) | 681 |
| Aor51HI | AGCGCT | 2 cut(s) | 75, 86 |
| ApaLI | GTGCAC | 1 cut(s) | 681 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspA2I | CCTAGG | 1 cut(s) | 662 |
| AspLEI | GCGC | 4 cut(s) | 76, 87, 147, 632 |
| AspS9I | GGNCC | 1 cut(s) | 512 |
| AvaII | GGWCC | 1 cut(s) | 512 |
| AvrII | CCTAGG | 1 cut(s) | 662 |
| BaeGI | GKGCMC | 1 cut(s) | 685 |
| BanI | GGYRCC | 2 cut(s) | 629, 650 |
| BanII | GRGCYC | 1 cut(s) | 468 |
| BauI | CACGAG | 2 cut(s) | 331, 389 |
| BbrPI | CACGTG | 1 cut(s) | 566 |
| Bbv12I | GWGCWC | 1 cut(s) | 685 |
| BciVI | GTATCC | 1 cut(s) | 553 |
| BfaI | CTAG | 2 cut(s) | 77, 663 |
| BfmI | CTRYAG | 2 cut(s) | 197, 363 |
| BfoI | RGCGCY | 3 cut(s) | 77, 88, 633 |
| BfuAI | ACCTGC | 1 cut(s) | 537 |
| BfuI | GTATCC | 1 cut(s) | 553 |
| BlnI | CCTAGG | 1 cut(s) | 662 |
| Bme18I | GGWCC | 1 cut(s) | 512 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 227 |
| BmgT120I | GGNCC | 1 cut(s) | 512 |
| BmiI | GGNNCC | 4 cut(s) | 479, 513, 631, 652 |
| BmsI | GCATC | 1 cut(s) | 43 |
| BoxI | GACNNNNGTC | 1 cut(s) | 717 |
| BpuEI | CTTGAG | 1 cut(s) | 452 |
| BsaAI | YACGTR | 2 cut(s) | 566, 584 |
| BsaHI | GRCGYC | 2 cut(s) | 7, 630 |
| BsaJI | CCNNGG | 2 cut(s) | 612, 662 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 26, 56, 580, 610, 643, 673 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 210, 461, 462, 532, 585, 664 |
| Bse3DI | GCAATG | 1 cut(s) | 100 |
| BseDI | CCNNGG | 2 cut(s) | 612, 662 |
| BseGI | GGATG | 1 cut(s) | 58 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 210, 461, 462, 532, 585, 664 |
| BseMI | GCAATG | 1 cut(s) | 100 |
| BseMII | CTCAG | 2 cut(s) | 40, 360 |
| BseRI | GAGGAG | 1 cut(s) | 101 |
| BseSI | GKGCMC | 1 cut(s) | 685 |
| BshNI | GGYRCC | 2 cut(s) | 629, 650 |
| BsiHKAI | GWGCWC | 1 cut(s) | 685 |
| BslFI | GGGAC | 1 cut(s) | 516 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 210, 461, 462, 532, 585, 664 |
| BsmFI | GGGAC | 1 cut(s) | 516 |
| Bsp1286I | GDGCHC | 2 cut(s) | 468, 685 |
| Bsp143I | GATC | 2 cut(s) | 45, 327 |
| Bsp19I | CCATGG | 1 cut(s) | 612 |
| BspACI | CCGC | 4 cut(s) | 304, 475, 544, 557 |
| BspCNI | CTCAG | 2 cut(s) | 39, 361 |
| BspHI | TCATGA | 1 cut(s) | 433 |
| BspLI | GGNNCC | 4 cut(s) | 479, 513, 631, 652 |
| BspMI | ACCTGC | 1 cut(s) | 537 |
| BspQI | GCTCTTC | 1 cut(s) | 195 |
| BspT107I | GGYRCC | 2 cut(s) | 629, 650 |
| BsrBI | CCGCTC | 1 cut(s) | 475 |
| BsrDI | GCAATG | 1 cut(s) | 100 |
| BssECI | CCNNGG | 2 cut(s) | 612, 662 |
| BssMI | GATC | 2 cut(s) | 45, 327 |
| BssNI | GRCGYC | 2 cut(s) | 7, 630 |
| BssSI | CACGAG | 2 cut(s) | 331, 389 |
| BssT1I | CCWWGG | 2 cut(s) | 612, 662 |
| Bst2BI | CACGAG | 2 cut(s) | 331, 389 |
| Bst4CI | ACNGT | 1 cut(s) | 201 |
| Bst6I | CTCTTC | 1 cut(s) | 195 |
| BstACI | GRCGYC | 2 cut(s) | 7, 630 |
| BstBAI | YACGTR | 2 cut(s) | 566, 584 |
| BstDEI | CTNAG | 3 cut(s) | 26, 369, 483 |
| BstDSI | CCRYGG | 1 cut(s) | 612 |
| BstF5I | GGATG | 1 cut(s) | 58 |
| BstH2I | RGCGCY | 3 cut(s) | 77, 88, 633 |
| BstHHI | GCGC | 4 cut(s) | 76, 87, 147, 632 |
| BstKTI | GATC | 2 cut(s) | 48, 330 |
| BstMBI | GATC | 2 cut(s) | 45, 327 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 82, 472 |
| BstNSI | RCATGY | 2 cut(s) | 230, 718 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 717 |
| BstSFI | CTRYAG | 2 cut(s) | 197, 363 |
| BstSLI | GKGCMC | 1 cut(s) | 685 |
| BsuI | GTATCC | 1 cut(s) | 553 |
| BtgI | CCRYGG | 1 cut(s) | 612 |
| BtsCI | GGATG | 1 cut(s) | 58 |
| BveI | ACCTGC | 1 cut(s) | 537 |
| CciI | TCATGA | 1 cut(s) | 433 |
| CfoI | GCGC | 4 cut(s) | 76, 87, 147, 632 |
| Cfr13I | GGNCC | 1 cut(s) | 512 |
| CseI | GACGC | 1 cut(s) | 15 |
| CviAII | CATG | 6 cut(s) | 205, 227, 377, 434, 613, 715 |
| CviJI | RGCY | 8 cut(s) | 64, 188, 281, 346, 368, 412, 466, 617 |
| CviKI_1 | RGCY | 8 cut(s) | 64, 188, 281, 346, 368, 412, 466, 617 |
| DdeI | CTNAG | 3 cut(s) | 26, 369, 483 |
| DinI | GGCGCC | 1 cut(s) | 631 |
| DpnI | GATC | 2 cut(s) | 47, 329 |
| DpnII | GATC | 2 cut(s) | 45, 327 |
| DraIII | CACNNNGTG | 2 cut(s) | 569, 680 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 510 |
| DriI | GACNNNNNGTC | 1 cut(s) | 227 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 510 |
| Eam1104I | CTCTTC | 1 cut(s) | 195 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 227 |
| EarI | CTCTTC | 1 cut(s) | 195 |
| Eco130I | CCWWGG | 2 cut(s) | 612, 662 |
| Eco24I | GRGCYC | 1 cut(s) | 468 |
| Eco47I | GGWCC | 1 cut(s) | 512 |
| Eco47III | AGCGCT | 2 cut(s) | 75, 86 |
| Eco72I | CACGTG | 1 cut(s) | 566 |
| EcoT14I | CCWWGG | 2 cut(s) | 612, 662 |
| EcoT38I | GRGCYC | 1 cut(s) | 468 |
| EgeI | GGCGCC | 1 cut(s) | 631 |
| EheI | GGCGCC | 1 cut(s) | 631 |
| ErhI | CCWWGG | 2 cut(s) | 612, 662 |
| FaeI | CATG | 6 cut(s) | 208, 230, 380, 437, 616, 718 |
| FaqI | GGGAC | 1 cut(s) | 516 |
| FatI | CATG | 6 cut(s) | 204, 226, 376, 433, 612, 714 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| FokI | GGATG | 1 cut(s) | 65 |
| FriOI | GRGCYC | 1 cut(s) | 468 |
| FspBI | CTAG | 2 cut(s) | 77, 663 |
| GlaI | GCGC | 4 cut(s) | 75, 86, 146, 631 |
| HaeII | RGCGCY | 3 cut(s) | 77, 88, 633 |
| HgaI | GACGC | 1 cut(s) | 15 |
| HhaI | GCGC | 4 cut(s) | 76, 87, 147, 632 |
| Hin1I | GRCGYC | 2 cut(s) | 7, 630 |
| Hin1II | CATG | 6 cut(s) | 208, 230, 380, 437, 616, 718 |
| Hin6I | GCGC | 4 cut(s) | 74, 85, 145, 630 |
| HinP1I | GCGC | 4 cut(s) | 74, 85, 145, 630 |
| HinfI | GANTC | 1 cut(s) | 104 |
| Hpy166II | GTNNAC | 2 cut(s) | 221, 683 |
| Hpy188I | TCNGA | 2 cut(s) | 29, 184 |
| Hpy188III | TCNNGA | 3 cut(s) | 331, 391, 434 |
| Hpy8I | GTNNAC | 2 cut(s) | 221, 683 |
| Hpy99I | CGWCG | 1 cut(s) | 9 |
| HpyAV | CCTTC | 3 cut(s) | 118, 277, 530 |
| HpyCH4III | ACNGT | 1 cut(s) | 201 |
| HpyCH4IV | ACGT | 3 cut(s) | 565, 583, 679 |
| HpyCH4V | TGCA | 3 cut(s) | 56, 452, 683 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 82, 472 |
| HpyF3I | CTNAG | 3 cut(s) | 26, 369, 483 |
| HpySE526I | ACGT | 3 cut(s) | 565, 583, 679 |
| Hsp92I | GRCGYC | 2 cut(s) | 7, 630 |
| Hsp92II | CATG | 6 cut(s) | 208, 230, 380, 437, 616, 718 |
| HspAI | GCGC | 4 cut(s) | 74, 85, 145, 630 |
| KasI | GGCGCC | 1 cut(s) | 629 |
| Kzo9I | GATC | 2 cut(s) | 45, 327 |
| LguI | GCTCTTC | 1 cut(s) | 195 |
| LmnI | GCTCC | 1 cut(s) | 472 |
| LpnPI | CCDG | 4 cut(s) | 129, 306, 494, 532 |
| LweI | GCATC | 1 cut(s) | 43 |
| MaeI | CTAG | 2 cut(s) | 77, 663 |
| MaeII | ACGT | 3 cut(s) | 565, 583, 679 |
| MaeIII | GTNAC | 1 cut(s) | 229 |
| MalI | GATC | 2 cut(s) | 47, 329 |
| MbiI | CCGCTC | 1 cut(s) | 475 |
| MboI | GATC | 2 cut(s) | 45, 327 |
| MboII | GAAGA | 1 cut(s) | 182 |
| MhlI | GDGCHC | 2 cut(s) | 468, 685 |
| MluCI | AATT | 6 cut(s) | 178, 246, 397, 403, 442, 689 |
| Mly113I | GGCGCC | 1 cut(s) | 630 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MseI | TTAA | 1 cut(s) | 692 |
| MslI | CAYNNNNRTG | 1 cut(s) | 389 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 82, 472 |
| NarI | GGCGCC | 1 cut(s) | 630 |
| NcoI | CCATGG | 1 cut(s) | 612 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 2 cut(s) | 45, 327 |
| NlaIII | CATG | 6 cut(s) | 208, 230, 380, 437, 616, 718 |
| NlaIV | GGNNCC | 4 cut(s) | 479, 513, 631, 652 |
| NmuCI | GTSAC | 1 cut(s) | 229 |
| NspI | RCATGY | 2 cut(s) | 230, 718 |
| PagI | TCATGA | 1 cut(s) | 433 |
| PciI | ACATGT | 2 cut(s) | 226, 714 |
| PciSI | GCTCTTC | 1 cut(s) | 195 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 676 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PfeI | GAWTC | 1 cut(s) | 104 |
| PluTI | GGCGCC | 1 cut(s) | 633 |
| PmaCI | CACGTG | 1 cut(s) | 566 |
| PmlI | CACGTG | 1 cut(s) | 566 |
| Ppu21I | YACGTR | 2 cut(s) | 566, 584 |
| PscI | ACATGT | 2 cut(s) | 226, 714 |
| PshAI | GACNNNNGTC | 1 cut(s) | 717 |
| PsiI | TTATAA | 2 cut(s) | 402, 447 |
| PspCI | CACGTG | 1 cut(s) | 566 |
| PspN4I | GGNNCC | 4 cut(s) | 479, 513, 631, 652 |
| PspPI | GGNCC | 1 cut(s) | 512 |
| RseI | CAYNNNNRTG | 1 cut(s) | 389 |
| SapI | GCTCTTC | 1 cut(s) | 195 |
| SaqAI | TTAA | 1 cut(s) | 692 |
| Sau3AI | GATC | 2 cut(s) | 45, 327 |
| Sau96I | GGNCC | 1 cut(s) | 512 |
| SduI | GDGCHC | 2 cut(s) | 468, 685 |
| SfaNI | GCATC | 1 cut(s) | 43 |
| SfcI | CTRYAG | 2 cut(s) | 197, 363 |
| SfoI | GGCGCC | 1 cut(s) | 631 |
| SinI | GGWCC | 1 cut(s) | 512 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 389 |
| SmlI | CTYRAG | 1 cut(s) | 467 |
| SmoI | CTYRAG | 1 cut(s) | 467 |
| Sse9I | AATT | 6 cut(s) | 178, 246, 397, 403, 442, 689 |
| SsiI | CCGC | 4 cut(s) | 304, 475, 544, 557 |
| SspDI | GGCGCC | 1 cut(s) | 629 |
| SspMI | CTAG | 2 cut(s) | 77, 663 |
| StyI | CCWWGG | 2 cut(s) | 612, 662 |
| TaaI | ACNGT | 1 cut(s) | 201 |
| TaiI | ACGT | 3 cut(s) | 568, 586, 682 |
| TaqI | TCGA | 1 cut(s) | 44 |
| TasI | AATT | 6 cut(s) | 178, 246, 397, 403, 442, 689 |
| TfiI | GAWTC | 1 cut(s) | 104 |
| Tru1I | TTAA | 1 cut(s) | 692 |
| Tru9I | TTAA | 1 cut(s) | 692 |
| TseFI | GTSAC | 1 cut(s) | 229 |
| Tsp45I | GTSAC | 1 cut(s) | 229 |
| TspDTI | ATGAA | 2 cut(s) | 329, 422 |
| VneI | GTGCAC | 1 cut(s) | 681 |
| VpaK11BI | GGWCC | 1 cut(s) | 512 |
| XceI | RCATGY | 2 cut(s) | 230, 718 |
| XmaJI | CCTAGG | 1 cut(s) | 662 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 2 cut(s) | 77, 663 |