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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 648 |
| Acc16I | TGCGCA | 2 cut(s) | 135, 180 |
| AccII | CGCG | 1 cut(s) | 105 |
| AciI | CCGC | 3 cut(s) | 17, 71, 334 |
| AcsI | RAATTY | 1 cut(s) | 683 |
| AfaI | GTAC | 2 cut(s) | 36, 503 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 46, 203 |
| AgeI | ACCGGT | 1 cut(s) | 237 |
| AgsI | TTSAA | 1 cut(s) | 631 |
| AjnI | CCWGG | 4 cut(s) | 185, 196, 360, 384 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 543, 575 |
| AluBI | AGCT | 2 cut(s) | 60, 231 |
| AluI | AGCT | 2 cut(s) | 60, 231 |
| Alw26I | GTCTC | 1 cut(s) | 547 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 63 |
| AoxI | GGCC | 4 cut(s) | 117, 183, 212, 245 |
| ApeKI | GCWGC | 8 cut(s) | 20, 57, 68, 80, 131, 166, 176, 535 |
| ApoI | RAATTY | 1 cut(s) | 683 |
| AsiGI | ACCGGT | 1 cut(s) | 237 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 660 |
| AspLEI | GCGC | 4 cut(s) | 105, 107, 136, 181 |
| AspS9I | GGNCC | 1 cut(s) | 235 |
| AsuC2I | CCSGG | 1 cut(s) | 41 |
| AvaII | GGWCC | 1 cut(s) | 235 |
| BbsI | GAAGAC | 1 cut(s) | 528 |
| BbvCI | CCTCAGC | 1 cut(s) | 45 |
| BbvI | GCAGC | 8 cut(s) | 7, 55, 69, 92, 118, 153, 163, 522 |
| BccI | CCATC | 4 cut(s) | 345, 347, 470, 597 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 596, 630 |
| BciT130I | CCWGG | 4 cut(s) | 187, 198, 362, 386 |
| BcnI | CCSGG | 1 cut(s) | 41 |
| BcoDI | GTCTC | 1 cut(s) | 547 |
| BfaI | CTAG | 3 cut(s) | 203, 381, 593 |
| BisI | GCNGC | 9 cut(s) | 18, 21, 58, 69, 81, 132, 167, 177, 536 |
| BlsI | GCNGC | 9 cut(s) | 19, 22, 59, 70, 82, 133, 168, 178, 537 |
| Bme1390I | CCNGG | 5 cut(s) | 41, 187, 198, 362, 386 |
| Bme18I | GGWCC | 1 cut(s) | 235 |
| BmgT120I | GGNCC | 1 cut(s) | 235 |
| BmiI | GGNNCC | 1 cut(s) | 236 |
| BmrFI | CCNGG | 5 cut(s) | 41, 187, 198, 362, 386 |
| BmrI | ACTGGG | 1 cut(s) | 73 |
| BmuI | ACTGGG | 1 cut(s) | 73 |
| BpiI | GAAGAC | 1 cut(s) | 528 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 531, 563 |
| BpmI | CTGGAG | 4 cut(s) | 146, 191, 229, 482 |
| Bpu10I | CCTNAGC | 1 cut(s) | 45 |
| BpuEI | CTTGAG | 2 cut(s) | 329, 395 |
| BpuMI | CCSGG | 1 cut(s) | 41 |
| BsaJI | CCNNGG | 2 cut(s) | 186, 197 |
| BsaWI | WCCGGW | 1 cut(s) | 237 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 46, 203 |
| Bse118I | RCCGGY | 2 cut(s) | 214, 237 |
| Bse1I | ACTGG | 3 cut(s) | 68, 304, 499 |
| BseBI | CCWGG | 4 cut(s) | 187, 198, 362, 386 |
| BseDI | CCNNGG | 2 cut(s) | 186, 197 |
| BseGI | GGATG | 3 cut(s) | 261, 465, 493 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 46, 203 |
| BseMII | CTCAG | 1 cut(s) | 36 |
| BseNI | ACTGG | 3 cut(s) | 68, 304, 499 |
| BsePI | GCGCGC | 1 cut(s) | 103 |
| BseXI | GCAGC | 8 cut(s) | 7, 55, 69, 92, 118, 153, 163, 522 |
| BseYI | CCCAGC | 4 cut(s) | 52, 75, 160, 231 |
| Bsh1236I | CGCG | 1 cut(s) | 105 |
| BshFI | GGCC | 4 cut(s) | 119, 185, 214, 247 |
| BshTI | ACCGGT | 1 cut(s) | 237 |
| BsiSI | CCGG | 3 cut(s) | 40, 215, 238 |
| BslFI | GGGAC | 1 cut(s) | 248 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 46, 203 |
| BsmAI | GTCTC | 1 cut(s) | 547 |
| BsmFI | GGGAC | 1 cut(s) | 248 |
| BsnI | GGCC | 4 cut(s) | 119, 185, 214, 247 |
| Bsp143I | GATC | 1 cut(s) | 121 |
| BspACI | CCGC | 3 cut(s) | 17, 71, 334 |
| BspANI | GGCC | 4 cut(s) | 119, 185, 214, 247 |
| BspCNI | CTCAG | 1 cut(s) | 37 |
| BspFNI | CGCG | 1 cut(s) | 105 |
| BspHI | TCATGA | 1 cut(s) | 325 |
| BspLI | GGNNCC | 1 cut(s) | 236 |
| BsrFI | RCCGGY | 2 cut(s) | 214, 237 |
| BsrI | ACTGG | 3 cut(s) | 68, 304, 499 |
| BssAI | RCCGGY | 2 cut(s) | 214, 237 |
| BssECI | CCNNGG | 2 cut(s) | 186, 197 |
| BssHII | GCGCGC | 1 cut(s) | 103 |
| BssMI | GATC | 1 cut(s) | 121 |
| Bst2UI | CCWGG | 4 cut(s) | 187, 198, 362, 386 |
| Bst4CI | ACNGT | 1 cut(s) | 400 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 89 |
| BstC8I | GCNNGC | 3 cut(s) | 73, 105, 183 |
| BstDEI | CTNAG | 2 cut(s) | 45, 439 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 201 |
| BstF5I | GGATG | 3 cut(s) | 261, 465, 493 |
| BstFNI | CGCG | 1 cut(s) | 105 |
| BstHHI | GCGC | 4 cut(s) | 105, 107, 136, 181 |
| BstKTI | GATC | 1 cut(s) | 124 |
| BstMAI | GTCTC | 1 cut(s) | 547 |
| BstMBI | GATC | 1 cut(s) | 121 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 77, 89, 166, 182, 431, 452 |
| BstNI | CCWGG | 4 cut(s) | 187, 198, 362, 386 |
| BstNSI | RCATGY | 1 cut(s) | 394 |
| BstSCI | CCNGG | 5 cut(s) | 39, 185, 196, 360, 384 |
| BstUI | CGCG | 1 cut(s) | 105 |
| BstV1I | GCAGC | 8 cut(s) | 7, 55, 69, 92, 118, 153, 163, 522 |
| BstV2I | GAAGAC | 1 cut(s) | 528 |
| BsuRI | GGCC | 4 cut(s) | 119, 185, 214, 247 |
| BtsCI | GGATG | 3 cut(s) | 261, 465, 493 |
| BtsI | GCAGTG | 1 cut(s) | 90 |
| BtsIMutI | CAGTG | 1 cut(s) | 90 |
| Cac8I | GCNNGC | 3 cut(s) | 73, 105, 183 |
| CaiI | CAGNNNCTG | 1 cut(s) | 63 |
| CciI | TCATGA | 1 cut(s) | 325 |
| CfoI | GCGC | 4 cut(s) | 105, 107, 136, 181 |
| Cfr10I | RCCGGY | 2 cut(s) | 214, 237 |
| Cfr13I | GGNCC | 1 cut(s) | 235 |
| Csp6I | GTAC | 2 cut(s) | 35, 502 |
| CspAI | ACCGGT | 1 cut(s) | 237 |
| CviAII | CATG | 4 cut(s) | 24, 29, 326, 391 |
| CviQI | GTAC | 2 cut(s) | 35, 502 |
| DdeI | CTNAG | 2 cut(s) | 45, 439 |
| DpnI | GATC | 1 cut(s) | 123 |
| DpnII | GATC | 1 cut(s) | 121 |
| EciI | GGCGGA | 1 cut(s) | 323 |
| Eco32I | GATATC | 2 cut(s) | 311, 331 |
| Eco47I | GGWCC | 1 cut(s) | 235 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 201 |
| EcoRII | CCWGG | 4 cut(s) | 185, 196, 360, 384 |
| EcoRV | GATATC | 2 cut(s) | 311, 331 |
| FaeI | CATG | 4 cut(s) | 27, 32, 329, 394 |
| FaqI | GGGAC | 1 cut(s) | 248 |
| FatI | CATG | 4 cut(s) | 23, 28, 325, 390 |
| FauI | CCCGC | 1 cut(s) | 64 |
| FauNDI | CATATG | 2 cut(s) | 94, 483 |
| Fnu4HI | GCNGC | 9 cut(s) | 18, 21, 58, 69, 81, 132, 167, 177, 536 |
| FokI | GGATG | 3 cut(s) | 268, 452, 500 |
| Fsp4HI | GCNGC | 9 cut(s) | 18, 21, 58, 69, 81, 132, 167, 177, 536 |
| FspBI | CTAG | 3 cut(s) | 203, 381, 593 |
| FspI | TGCGCA | 2 cut(s) | 135, 180 |
| GlaI | GCGC | 4 cut(s) | 104, 106, 135, 180 |
| GluI | GCNGC | 9 cut(s) | 18, 21, 58, 69, 81, 132, 167, 177, 536 |
| GsaI | CCCAGC | 4 cut(s) | 56, 79, 164, 235 |
| GsuI | CTGGAG | 4 cut(s) | 146, 191, 229, 482 |
| HaeIII | GGCC | 4 cut(s) | 119, 185, 214, 247 |
| HapII | CCGG | 3 cut(s) | 40, 215, 238 |
| HhaI | GCGC | 4 cut(s) | 105, 107, 136, 181 |
| Hin1II | CATG | 4 cut(s) | 27, 32, 329, 394 |
| Hin6I | GCGC | 4 cut(s) | 103, 105, 134, 179 |
| HinP1I | GCGC | 4 cut(s) | 103, 105, 134, 179 |
| HinfI | GANTC | 6 cut(s) | 357, 370, 475, 491, 540, 575 |
| HpaII | CCGG | 3 cut(s) | 40, 215, 238 |
| Hpy188I | TCNGA | 1 cut(s) | 655 |
| Hpy188III | TCNNGA | 5 cut(s) | 125, 306, 326, 374, 587 |
| HpyAV | CCTTC | 3 cut(s) | 109, 525, 623 |
| HpyCH4III | ACNGT | 1 cut(s) | 400 |
| HpyCH4IV | ACGT | 1 cut(s) | 567 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 12, 23, 92 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 77, 89, 166, 182, 431, 452 |
| HpyF3I | CTNAG | 2 cut(s) | 45, 439 |
| HpySE526I | ACGT | 1 cut(s) | 567 |
| Hsp92II | CATG | 4 cut(s) | 27, 32, 329, 394 |
| HspAI | GCGC | 4 cut(s) | 103, 105, 134, 179 |
| Kzo9I | GATC | 1 cut(s) | 121 |
| LmnI | GCTCC | 2 cut(s) | 289, 501 |
| Lsp1109I | GCAGC | 8 cut(s) | 7, 55, 69, 92, 118, 153, 163, 522 |
| MaeI | CTAG | 3 cut(s) | 203, 381, 593 |
| MaeII | ACGT | 1 cut(s) | 567 |
| MaeIII | GTNAC | 3 cut(s) | 192, 260, 572 |
| MalI | GATC | 1 cut(s) | 123 |
| MboI | GATC | 1 cut(s) | 121 |
| MboII | GAAGA | 3 cut(s) | 530, 533, 563 |
| MluCI | AATT | 2 cut(s) | 272, 683 |
| MlyI | GAGTC | 3 cut(s) | 469, 549, 569 |
| MnlI | CCTC | 8 cut(s) | 25, 40, 93, 121, 147, 166, 204, 436 |
| MroXI | GAANNNNTTC | 1 cut(s) | 660 |
| MseI | TTAA | 2 cut(s) | 669, 677 |
| MslI | CAYNNNNRTG | 2 cut(s) | 470, 486 |
| MspI | CCGG | 3 cut(s) | 40, 215, 238 |
| MspR9I | CCNGG | 5 cut(s) | 41, 187, 198, 362, 386 |
| MvaI | CCWGG | 4 cut(s) | 187, 198, 362, 386 |
| MvnI | CGCG | 1 cut(s) | 105 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 77, 89, 166, 182, 431, 452 |
| NciI | CCSGG | 1 cut(s) | 41 |
| NdeI | CATATG | 2 cut(s) | 94, 483 |
| NdeII | GATC | 1 cut(s) | 121 |
| NlaIII | CATG | 4 cut(s) | 27, 32, 329, 394 |
| NlaIV | GGNNCC | 1 cut(s) | 236 |
| NmuCI | GTSAC | 1 cut(s) | 572 |
| NsbI | TGCGCA | 2 cut(s) | 135, 180 |
| NspI | RCATGY | 1 cut(s) | 394 |
| PagI | TCATGA | 1 cut(s) | 325 |
| PauI | GCGCGC | 1 cut(s) | 103 |
| PdmI | GAANNNNTTC | 1 cut(s) | 660 |
| PfeI | GAWTC | 3 cut(s) | 357, 370, 491 |
| PfoI | TCCNGGA | 1 cut(s) | 360 |
| PinAI | ACCGGT | 1 cut(s) | 237 |
| PkrI | GCNGC | 9 cut(s) | 19, 22, 59, 70, 82, 133, 168, 178, 537 |
| PleI | GAGTC | 3 cut(s) | 469, 548, 569 |
| PpsI | GAGTC | 3 cut(s) | 469, 548, 569 |
| PsiI | TTATAA | 1 cut(s) | 648 |
| Psp6I | CCWGG | 4 cut(s) | 185, 196, 360, 384 |
| PspFI | CCCAGC | 4 cut(s) | 52, 75, 160, 231 |
| PspGI | CCWGG | 4 cut(s) | 185, 196, 360, 384 |
| PspN4I | GGNNCC | 1 cut(s) | 236 |
| PspPI | GGNCC | 1 cut(s) | 235 |
| PstNI | CAGNNNCTG | 1 cut(s) | 63 |
| PteI | GCGCGC | 1 cut(s) | 103 |
| RsaI | GTAC | 2 cut(s) | 36, 503 |
| RsaNI | GTAC | 2 cut(s) | 35, 502 |
| RseI | CAYNNNNRTG | 2 cut(s) | 470, 486 |
| SaqAI | TTAA | 2 cut(s) | 669, 677 |
| SatI | GCNGC | 9 cut(s) | 18, 21, 58, 69, 81, 132, 167, 177, 536 |
| Sau3AI | GATC | 1 cut(s) | 121 |
| Sau96I | GGNCC | 1 cut(s) | 235 |
| SchI | GAGTC | 3 cut(s) | 469, 549, 569 |
| ScrFI | CCNGG | 5 cut(s) | 41, 187, 198, 362, 386 |
| SetI | ASST | 7 cut(s) | 36, 62, 199, 233, 267, 570, 594 |
| SinI | GGWCC | 1 cut(s) | 235 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 470, 486 |
| SmlI | CTYRAG | 2 cut(s) | 344, 374 |
| SmoI | CTYRAG | 2 cut(s) | 344, 374 |
| Sse9I | AATT | 2 cut(s) | 272, 683 |
| SsiI | CCGC | 3 cut(s) | 17, 71, 334 |
| SspMI | CTAG | 3 cut(s) | 203, 381, 593 |
| StyD4I | CCNGG | 5 cut(s) | 39, 185, 196, 360, 384 |
| TaaI | ACNGT | 1 cut(s) | 400 |
| TaiI | ACGT | 1 cut(s) | 570 |
| TaqI | TCGA | 3 cut(s) | 226, 307, 549 |
| TasI | AATT | 2 cut(s) | 272, 683 |
| TauI | GCSGC | 1 cut(s) | 20 |
| TfiI | GAWTC | 3 cut(s) | 357, 370, 491 |
| Tru1I | TTAA | 2 cut(s) | 669, 677 |
| Tru9I | TTAA | 2 cut(s) | 669, 677 |
| TscAI | CASTG | 1 cut(s) | 90 |
| TseFI | GTSAC | 1 cut(s) | 572 |
| TseI | GCWGC | 8 cut(s) | 20, 57, 68, 80, 131, 166, 176, 535 |
| Tsp45I | GTSAC | 1 cut(s) | 572 |
| TspDTI | ATGAA | 2 cut(s) | 314, 527 |
| TspGWI | ACGGA | 1 cut(s) | 560 |
| TspRI | CASTG | 1 cut(s) | 90 |
| VpaK11BI | GGWCC | 1 cut(s) | 235 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 201 |
| XapI | RAATTY | 1 cut(s) | 683 |
| XceI | RCATGY | 1 cut(s) | 394 |
| XmnI | GAANNNNTTC | 1 cut(s) | 660 |
| XspI | CTAG | 3 cut(s) | 203, 381, 593 |