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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 239, 570 |
| AccIII | TCCGGA | 1 cut(s) | 550 |
| AclI | AACGTT | 1 cut(s) | 312 |
| AclWI | GGATC | 5 cut(s) | 61, 74, 97, 109, 110 |
| AfaI | GTAC | 2 cut(s) | 112, 254 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 262 |
| AgsI | TTSAA | 1 cut(s) | 167 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AluBI | AGCT | 4 cut(s) | 155, 179, 200, 463 |
| AluI | AGCT | 4 cut(s) | 155, 179, 200, 463 |
| Alw26I | GTCTC | 2 cut(s) | 32, 397 |
| AlwI | GGATC | 5 cut(s) | 61, 74, 97, 109, 110 |
| Ama87I | CYCGRG | 1 cut(s) | 293 |
| Aor13HI | TCCGGA | 1 cut(s) | 550 |
| ApeKI | GCWGC | 3 cut(s) | 155, 158, 298 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 539, 571 |
| AseI | ATTAAT | 1 cut(s) | 468 |
| AspLEI | GCGC | 4 cut(s) | 50, 81, 241, 572 |
| AvaI | CYCGRG | 1 cut(s) | 293 |
| BamHI | GGATCC | 2 cut(s) | 66, 102 |
| BbsI | GAAGAC | 1 cut(s) | 273 |
| BbvI | GCAGC | 3 cut(s) | 142, 145, 310 |
| BccI | CCATC | 1 cut(s) | 389 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcoDI | GTCTC | 2 cut(s) | 32, 397 |
| BfaI | CTAG | 2 cut(s) | 438, 525 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| BisI | GCNGC | 3 cut(s) | 156, 159, 299 |
| BlsI | GCNGC | 3 cut(s) | 157, 160, 300 |
| BmeT110I | CYCGRG | 1 cut(s) | 293 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmiI | GGNNCC | 3 cut(s) | 68, 104, 538 |
| BmsI | GCATC | 1 cut(s) | 453 |
| BpiI | GAAGAC | 1 cut(s) | 273 |
| BsaBI | GATNNNNATC | 1 cut(s) | 362 |
| BsaJI | CCNNGG | 1 cut(s) | 576 |
| BsaWI | WCCGGW | 1 cut(s) | 550 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 262 |
| Bse8I | GATNNNNATC | 1 cut(s) | 362 |
| BseAI | TCCGGA | 1 cut(s) | 550 |
| BseDI | CCNNGG | 1 cut(s) | 576 |
| BseJI | GATNNNNATC | 1 cut(s) | 362 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 262 |
| BseMII | CTCAG | 1 cut(s) | 98 |
| BseRI | GAGGAG | 1 cut(s) | 135 |
| BseXI | GCAGC | 3 cut(s) | 142, 145, 310 |
| Bsh1236I | CGCG | 2 cut(s) | 239, 570 |
| BsiHKCI | CYCGRG | 1 cut(s) | 293 |
| BsiSI | CCGG | 1 cut(s) | 551 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 262 |
| BsmAI | GTCTC | 2 cut(s) | 32, 397 |
| BsmBI | CGTCTC | 1 cut(s) | 397 |
| BsoBI | CYCGRG | 1 cut(s) | 293 |
| Bsp13I | TCCGGA | 1 cut(s) | 550 |
| Bsp143I | GATC | 4 cut(s) | 66, 102, 114, 363 |
| BspCNI | CTCAG | 1 cut(s) | 99 |
| BspEI | TCCGGA | 1 cut(s) | 550 |
| BspFNI | CGCG | 2 cut(s) | 239, 570 |
| BspHI | TCATGA | 2 cut(s) | 216, 457 |
| BspLI | GGNNCC | 3 cut(s) | 68, 104, 538 |
| BspPI | GGATC | 5 cut(s) | 61, 74, 97, 109, 110 |
| BssECI | CCNNGG | 1 cut(s) | 576 |
| BssMI | GATC | 4 cut(s) | 66, 102, 114, 363 |
| BssT1I | CCWWGG | 1 cut(s) | 576 |
| BstC8I | GCNNGC | 1 cut(s) | 83 |
| BstDEI | CTNAG | 3 cut(s) | 107, 180, 337 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 260 |
| BstFNI | CGCG | 2 cut(s) | 239, 570 |
| BstHHI | GCGC | 4 cut(s) | 50, 81, 241, 572 |
| BstKTI | GATC | 4 cut(s) | 69, 105, 117, 366 |
| BstMAI | GTCTC | 2 cut(s) | 32, 397 |
| BstMBI | GATC | 4 cut(s) | 66, 102, 114, 363 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 197 |
| BstUI | CGCG | 2 cut(s) | 239, 570 |
| BstV1I | GCAGC | 3 cut(s) | 142, 145, 310 |
| BstV2I | GAAGAC | 1 cut(s) | 273 |
| BstX2I | RGATCY | 2 cut(s) | 66, 102 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 481 |
| BstYI | RGATCY | 2 cut(s) | 66, 102 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsIMutI | CAGTG | 1 cut(s) | 348 |
| Cac8I | GCNNGC | 1 cut(s) | 83 |
| CciI | TCATGA | 2 cut(s) | 216, 457 |
| CfoI | GCGC | 4 cut(s) | 50, 81, 241, 572 |
| CseI | GACGC | 2 cut(s) | 245, 450 |
| Csp6I | GTAC | 2 cut(s) | 111, 253 |
| CviAII | CATG | 4 cut(s) | 217, 229, 458, 475 |
| CviJI | RGCY | 9 cut(s) | 95, 124, 155, 179, 200, 206, 410, 463, 485 |
| CviKI_1 | RGCY | 9 cut(s) | 95, 124, 155, 179, 200, 206, 410, 463, 485 |
| CviQI | GTAC | 2 cut(s) | 111, 253 |
| DdeI | CTNAG | 3 cut(s) | 107, 180, 337 |
| DpnI | GATC | 4 cut(s) | 68, 104, 116, 365 |
| DpnII | GATC | 4 cut(s) | 66, 102, 114, 363 |
| Eco130I | CCWWGG | 1 cut(s) | 576 |
| Eco88I | CYCGRG | 1 cut(s) | 293 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 260 |
| EcoT14I | CCWWGG | 1 cut(s) | 576 |
| ErhI | CCWWGG | 1 cut(s) | 576 |
| Esp3I | CGTCTC | 1 cut(s) | 397 |
| FaeI | CATG | 4 cut(s) | 220, 232, 461, 478 |
| FaiI | YATR | 9 cut(s) | 87, 218, 230, 283, 459, 476, 503, 519, 564 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FatI | CATG | 4 cut(s) | 216, 228, 457, 474 |
| Fnu4HI | GCNGC | 3 cut(s) | 156, 159, 299 |
| Fsp4HI | GCNGC | 3 cut(s) | 156, 159, 299 |
| FspBI | CTAG | 2 cut(s) | 438, 525 |
| GlaI | GCGC | 4 cut(s) | 49, 80, 240, 571 |
| GluI | GCNGC | 3 cut(s) | 156, 159, 299 |
| HapII | CCGG | 1 cut(s) | 551 |
| HgaI | GACGC | 2 cut(s) | 245, 450 |
| HhaI | GCGC | 4 cut(s) | 50, 81, 241, 572 |
| Hin1II | CATG | 4 cut(s) | 220, 232, 461, 478 |
| Hin6I | GCGC | 4 cut(s) | 48, 79, 239, 570 |
| HinP1I | GCGC | 4 cut(s) | 48, 79, 239, 570 |
| HinfI | GANTC | 2 cut(s) | 320, 554 |
| HpaII | CCGG | 1 cut(s) | 551 |
| Hpy188I | TCNGA | 3 cut(s) | 334, 423, 449 |
| Hpy188III | TCNNGA | 8 cut(s) | 106, 131, 217, 317, 367, 458, 525, 551 |
| HpyCH4IV | ACGT | 3 cut(s) | 135, 312, 480 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 197 |
| HpyF3I | CTNAG | 3 cut(s) | 107, 180, 337 |
| HpySE526I | ACGT | 3 cut(s) | 135, 312, 480 |
| Hsp92II | CATG | 4 cut(s) | 220, 232, 461, 478 |
| HspAI | GCGC | 4 cut(s) | 48, 79, 239, 570 |
| Kpn2I | TCCGGA | 1 cut(s) | 550 |
| Kzo9I | GATC | 4 cut(s) | 66, 102, 114, 363 |
| LmnI | GCTCC | 2 cut(s) | 34, 246 |
| LpnPI | CCDG | 9 cut(s) | 23, 30, 36, 95, 116, 119, 338, 543, 564 |
| Lsp1109I | GCAGC | 3 cut(s) | 142, 145, 310 |
| LweI | GCATC | 1 cut(s) | 453 |
| MaeI | CTAG | 2 cut(s) | 438, 525 |
| MaeII | ACGT | 3 cut(s) | 135, 312, 480 |
| MaeIII | GTNAC | 1 cut(s) | 5 |
| MalI | GATC | 4 cut(s) | 68, 104, 116, 365 |
| MboI | GATC | 4 cut(s) | 66, 102, 114, 363 |
| MboII | GAAGA | 4 cut(s) | 278, 376, 462, 523 |
| MflI | RGATCY | 2 cut(s) | 66, 102 |
| MluCI | AATT | 2 cut(s) | 465, 559 |
| MlyI | GAGTC | 1 cut(s) | 563 |
| MnlI | CCTC | 6 cut(s) | 156, 181, 256, 266, 575, 583 |
| MroI | TCCGGA | 1 cut(s) | 550 |
| MseI | TTAA | 3 cut(s) | 90, 432, 468 |
| MslI | CAYNNNNRTG | 3 cut(s) | 231, 479, 506 |
| MspI | CCGG | 1 cut(s) | 551 |
| MvnI | CGCG | 2 cut(s) | 239, 570 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 197 |
| NdeII | GATC | 4 cut(s) | 66, 102, 114, 363 |
| NlaIII | CATG | 4 cut(s) | 220, 232, 461, 478 |
| NlaIV | GGNNCC | 3 cut(s) | 68, 104, 538 |
| PaeR7I | CTCGAG | 1 cut(s) | 293 |
| PagI | TCATGA | 2 cut(s) | 216, 457 |
| PfeI | GAWTC | 1 cut(s) | 320 |
| PkrI | GCNGC | 3 cut(s) | 157, 160, 300 |
| PleI | GAGTC | 1 cut(s) | 562 |
| PpsI | GAGTC | 1 cut(s) | 562 |
| PshBI | ATTAAT | 1 cut(s) | 468 |
| Psp1406I | AACGTT | 1 cut(s) | 312 |
| PspN4I | GGNNCC | 3 cut(s) | 68, 104, 538 |
| PspXI | VCTCGAGB | 1 cut(s) | 293 |
| PsuI | RGATCY | 2 cut(s) | 66, 102 |
| RsaI | GTAC | 2 cut(s) | 112, 254 |
| RsaNI | GTAC | 2 cut(s) | 111, 253 |
| RseI | CAYNNNNRTG | 3 cut(s) | 231, 479, 506 |
| SaqAI | TTAA | 3 cut(s) | 90, 432, 468 |
| SatI | GCNGC | 3 cut(s) | 156, 159, 299 |
| Sau3AI | GATC | 4 cut(s) | 66, 102, 114, 363 |
| SchI | GAGTC | 1 cut(s) | 563 |
| SfaNI | GCATC | 1 cut(s) | 453 |
| Sfr274I | CTCGAG | 1 cut(s) | 293 |
| SlaI | CTCGAG | 1 cut(s) | 293 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 231, 479, 506 |
| SmlI | CTYRAG | 1 cut(s) | 293 |
| SmoI | CTYRAG | 1 cut(s) | 293 |
| Sse9I | AATT | 2 cut(s) | 465, 559 |
| SspMI | CTAG | 2 cut(s) | 438, 525 |
| StyI | CCWWGG | 1 cut(s) | 576 |
| TaiI | ACGT | 3 cut(s) | 138, 315, 483 |
| TaqI | TCGA | 2 cut(s) | 294, 366 |
| TasI | AATT | 2 cut(s) | 465, 559 |
| TfiI | GAWTC | 1 cut(s) | 320 |
| Tru1I | TTAA | 3 cut(s) | 90, 432, 468 |
| Tru9I | TTAA | 3 cut(s) | 90, 432, 468 |
| TscAI | CASTG | 1 cut(s) | 355 |
| TseI | GCWGC | 3 cut(s) | 155, 158, 298 |
| TspDTI | ATGAA | 4 cut(s) | 210, 245, 446, 491 |
| TspGWI | ACGGA | 1 cut(s) | 59 |
| TspRI | CASTG | 1 cut(s) | 355 |
| VspI | ATTAAT | 1 cut(s) | 468 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 260 |
| XbaI | TCTAGA | 1 cut(s) | 524 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 279 |
| XhoI | CTCGAG | 1 cut(s) | 293 |
| XspI | CTAG | 2 cut(s) | 438, 525 |