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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 615 |
| AccB1I | GGYRCC | 1 cut(s) | 570 |
| AcsI | RAATTY | 1 cut(s) | 314 |
| AcuI | CTGAAG | 1 cut(s) | 45 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 566 |
| AgsI | TTSAA | 4 cut(s) | 85, 113, 262, 510 |
| AleI | CACNNNNGTG | 1 cut(s) | 252 |
| AluBI | AGCT | 4 cut(s) | 73, 137, 448, 458 |
| AluI | AGCT | 4 cut(s) | 73, 137, 448, 458 |
| Alw21I | GWGCWC | 1 cut(s) | 450 |
| Alw26I | GTCTC | 3 cut(s) | 13, 104, 177 |
| ApeKI | GCWGC | 2 cut(s) | 70, 73 |
| ApoI | RAATTY | 1 cut(s) | 314 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 291 |
| AspS9I | GGNCC | 1 cut(s) | 617 |
| AvaII | GGWCC | 1 cut(s) | 617 |
| AxyI | CCTNAGG | 1 cut(s) | 561 |
| BaeGI | GKGCMC | 1 cut(s) | 559 |
| BanI | GGYRCC | 1 cut(s) | 570 |
| BanII | GRGCYC | 1 cut(s) | 450 |
| BbsI | GAAGAC | 2 cut(s) | 43, 158 |
| Bbv12I | GWGCWC | 1 cut(s) | 450 |
| BbvI | GCAGC | 2 cut(s) | 60, 82 |
| BcoDI | GTCTC | 3 cut(s) | 13, 104, 177 |
| BfaI | CTAG | 2 cut(s) | 224, 594 |
| BisI | GCNGC | 2 cut(s) | 71, 74 |
| BlsI | GCNGC | 2 cut(s) | 72, 75 |
| Bme18I | GGWCC | 1 cut(s) | 617 |
| BmgT120I | GGNCC | 1 cut(s) | 617 |
| BmiI | GGNNCC | 1 cut(s) | 572 |
| BmsI | GCATC | 1 cut(s) | 328 |
| BpiI | GAAGAC | 2 cut(s) | 43, 158 |
| BpmI | CTGGAG | 1 cut(s) | 58 |
| BsaI | GGTCTC | 2 cut(s) | 13, 177 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 566 |
| Bse21I | CCTNAGG | 1 cut(s) | 561 |
| Bse3DI | GCAATG | 1 cut(s) | 348 |
| BseGI | GGATG | 1 cut(s) | 486 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 566 |
| BseMI | GCAATG | 1 cut(s) | 348 |
| BseMII | CTCAG | 2 cut(s) | 86, 552 |
| BseSI | GKGCMC | 1 cut(s) | 559 |
| BseXI | GCAGC | 2 cut(s) | 60, 82 |
| BshNI | GGYRCC | 1 cut(s) | 570 |
| BsiHKAI | GWGCWC | 1 cut(s) | 450 |
| BslFI | GGGAC | 1 cut(s) | 611 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 566 |
| BsmAI | GTCTC | 3 cut(s) | 13, 104, 177 |
| BsmFI | GGGAC | 1 cut(s) | 611 |
| Bso31I | GGTCTC | 2 cut(s) | 13, 177 |
| Bsp1286I | GDGCHC | 2 cut(s) | 450, 559 |
| Bsp143I | GATC | 2 cut(s) | 41, 130 |
| BspCNI | CTCAG | 2 cut(s) | 87, 553 |
| BspHI | TCATGA | 1 cut(s) | 442 |
| BspLI | GGNNCC | 1 cut(s) | 572 |
| BspT107I | GGYRCC | 1 cut(s) | 570 |
| BspTNI | GGTCTC | 2 cut(s) | 13, 177 |
| BsrDI | GCAATG | 1 cut(s) | 348 |
| BssMI | GATC | 2 cut(s) | 41, 130 |
| BstDEI | CTNAG | 6 cut(s) | 6, 95, 283, 307, 396, 561 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 564 |
| BstF5I | GGATG | 1 cut(s) | 486 |
| BstKTI | GATC | 2 cut(s) | 44, 133 |
| BstMAI | GTCTC | 3 cut(s) | 13, 104, 177 |
| BstMBI | GATC | 2 cut(s) | 41, 130 |
| BstSLI | GKGCMC | 1 cut(s) | 559 |
| BstV1I | GCAGC | 2 cut(s) | 60, 82 |
| BstV2I | GAAGAC | 2 cut(s) | 43, 158 |
| Bsu36I | CCTNAGG | 1 cut(s) | 561 |
| BtsCI | GGATG | 1 cut(s) | 486 |
| CciI | TCATGA | 1 cut(s) | 442 |
| Cfr13I | GGNCC | 1 cut(s) | 617 |
| CviAII | CATG | 3 cut(s) | 443, 479, 517 |
| CviJI | RGCY | 9 cut(s) | 5, 36, 73, 137, 165, 243, 448, 458, 514 |
| CviKI_1 | RGCY | 9 cut(s) | 5, 36, 73, 137, 165, 243, 448, 458, 514 |
| DdeI | CTNAG | 6 cut(s) | 6, 95, 283, 307, 396, 561 |
| DpnI | GATC | 2 cut(s) | 43, 132 |
| DpnII | GATC | 2 cut(s) | 41, 130 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 615 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 615 |
| Ecl136II | GAGCTC | 1 cut(s) | 448 |
| Eco24I | GRGCYC | 1 cut(s) | 450 |
| Eco31I | GGTCTC | 2 cut(s) | 13, 177 |
| Eco32I | GATATC | 1 cut(s) | 331 |
| Eco47I | GGWCC | 1 cut(s) | 617 |
| Eco53kI | GAGCTC | 1 cut(s) | 448 |
| Eco57I | CTGAAG | 1 cut(s) | 45 |
| Eco81I | CCTNAGG | 1 cut(s) | 561 |
| EcoICRI | GAGCTC | 1 cut(s) | 448 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 564 |
| EcoRV | GATATC | 1 cut(s) | 331 |
| EcoT38I | GRGCYC | 1 cut(s) | 450 |
| FaeI | CATG | 3 cut(s) | 446, 482, 520 |
| FaqI | GGGAC | 1 cut(s) | 611 |
| FatI | CATG | 3 cut(s) | 442, 478, 516 |
| Fnu4HI | GCNGC | 2 cut(s) | 71, 74 |
| FokI | GGATG | 1 cut(s) | 473 |
| FriOI | GRGCYC | 1 cut(s) | 450 |
| Fsp4HI | GCNGC | 2 cut(s) | 71, 74 |
| FspBI | CTAG | 2 cut(s) | 224, 594 |
| GluI | GCNGC | 2 cut(s) | 71, 74 |
| GsuI | CTGGAG | 1 cut(s) | 58 |
| Hin1II | CATG | 3 cut(s) | 446, 482, 520 |
| HinfI | GANTC | 4 cut(s) | 97, 118, 206, 408 |
| Hpy188I | TCNGA | 3 cut(s) | 18, 96, 537 |
| Hpy188III | TCNNGA | 3 cut(s) | 272, 443, 606 |
| HpyAV | CCTTC | 2 cut(s) | 155, 379 |
| HpyCH4IV | ACGT | 1 cut(s) | 198 |
| HpyCH4V | TGCA | 2 cut(s) | 341, 422 |
| HpyF3I | CTNAG | 6 cut(s) | 6, 95, 283, 307, 396, 561 |
| HpySE526I | ACGT | 1 cut(s) | 198 |
| Hsp92II | CATG | 3 cut(s) | 446, 482, 520 |
| Kzo9I | GATC | 2 cut(s) | 41, 130 |
| LmnI | GCTCC | 1 cut(s) | 455 |
| LpnPI | CCDG | 7 cut(s) | 22, 32, 36, 171, 573, 591, 600 |
| Lsp1109I | GCAGC | 2 cut(s) | 60, 82 |
| LweI | GCATC | 1 cut(s) | 328 |
| MaeI | CTAG | 2 cut(s) | 224, 594 |
| MaeII | ACGT | 1 cut(s) | 198 |
| MaeIII | GTNAC | 2 cut(s) | 203, 415 |
| MalI | GATC | 2 cut(s) | 43, 132 |
| MboI | GATC | 2 cut(s) | 41, 130 |
| MboII | GAAGA | 5 cut(s) | 38, 43, 163, 508, 653 |
| MhlI | GDGCHC | 2 cut(s) | 450, 559 |
| MluCI | AATT | 5 cut(s) | 108, 314, 348, 505, 544 |
| MlyI | GAGTC | 3 cut(s) | 106, 112, 200 |
| MnlI | CCTC | 5 cut(s) | 26, 254, 556, 560, 631 |
| MroXI | GAANNNNTTC | 1 cut(s) | 291 |
| MseI | TTAA | 2 cut(s) | 300, 347 |
| MslI | CAYNNNNRTG | 2 cut(s) | 252, 491 |
| MspA1I | CMGCKG | 1 cut(s) | 73 |
| NdeII | GATC | 2 cut(s) | 41, 130 |
| NlaIII | CATG | 3 cut(s) | 446, 482, 520 |
| NlaIV | GGNNCC | 1 cut(s) | 572 |
| NmuCI | GTSAC | 1 cut(s) | 203 |
| OliI | CACNNNNGTG | 1 cut(s) | 252 |
| PagI | TCATGA | 1 cut(s) | 442 |
| PdmI | GAANNNNTTC | 1 cut(s) | 291 |
| PfeI | GAWTC | 1 cut(s) | 408 |
| PkrI | GCNGC | 2 cut(s) | 72, 75 |
| PleI | GAGTC | 3 cut(s) | 105, 112, 200 |
| PpsI | GAGTC | 3 cut(s) | 105, 112, 200 |
| Psp124BI | GAGCTC | 1 cut(s) | 450 |
| PspN4I | GGNNCC | 1 cut(s) | 572 |
| PspPI | GGNCC | 1 cut(s) | 617 |
| PvuII | CAGCTG | 1 cut(s) | 73 |
| RseI | CAYNNNNRTG | 2 cut(s) | 252, 491 |
| SacI | GAGCTC | 1 cut(s) | 450 |
| SaqAI | TTAA | 2 cut(s) | 300, 347 |
| SatI | GCNGC | 2 cut(s) | 71, 74 |
| Sau3AI | GATC | 2 cut(s) | 41, 130 |
| Sau96I | GGNCC | 1 cut(s) | 617 |
| SchI | GAGTC | 3 cut(s) | 106, 112, 200 |
| SduI | GDGCHC | 2 cut(s) | 450, 559 |
| SfaNI | GCATC | 1 cut(s) | 328 |
| SinI | GGWCC | 1 cut(s) | 617 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 252, 491 |
| Sse9I | AATT | 5 cut(s) | 108, 314, 348, 505, 544 |
| SspMI | CTAG | 2 cut(s) | 224, 594 |
| SstI | GAGCTC | 1 cut(s) | 450 |
| TaiI | ACGT | 1 cut(s) | 201 |
| TaqI | TCGA | 3 cut(s) | 133, 179, 406 |
| TasI | AATT | 5 cut(s) | 108, 314, 348, 505, 544 |
| TfiI | GAWTC | 1 cut(s) | 408 |
| Tru1I | TTAA | 2 cut(s) | 300, 347 |
| Tru9I | TTAA | 2 cut(s) | 300, 347 |
| TseFI | GTSAC | 1 cut(s) | 203 |
| TseI | GCWGC | 2 cut(s) | 70, 73 |
| Tsp45I | GTSAC | 1 cut(s) | 203 |
| TspDTI | ATGAA | 4 cut(s) | 120, 431, 476, 509 |
| VpaK11BI | GGWCC | 1 cut(s) | 617 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 564 |
| XapI | RAATTY | 1 cut(s) | 314 |
| XmnI | GAANNNNTTC | 1 cut(s) | 291 |
| XspI | CTAG | 2 cut(s) | 224, 594 |