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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 429 |
| AccIII | TCCGGA | 1 cut(s) | 394 |
| AciI | CCGC | 2 cut(s) | 552, 555 |
| AclWI | GGATC | 1 cut(s) | 296 |
| AcsI | RAATTY | 1 cut(s) | 173 |
| AcyI | GRCGYC | 2 cut(s) | 430, 630 |
| AfaI | GTAC | 1 cut(s) | 615 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 517, 574 |
| AgsI | TTSAA | 3 cut(s) | 41, 121, 666 |
| AjnI | CCWGG | 1 cut(s) | 634 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 33, 65 |
| AluBI | AGCT | 3 cut(s) | 307, 317, 539 |
| AluI | AGCT | 3 cut(s) | 307, 317, 539 |
| Alw21I | GWGCWC | 1 cut(s) | 309 |
| Alw26I | GTCTC | 1 cut(s) | 37 |
| AlwI | GGATC | 1 cut(s) | 296 |
| Aor13HI | TCCGGA | 1 cut(s) | 394 |
| ApeKI | GCWGC | 1 cut(s) | 539 |
| ApoI | RAATTY | 1 cut(s) | 173 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 150 |
| AspA2I | CCTAGG | 1 cut(s) | 572 |
| AspLEI | GCGC | 1 cut(s) | 432 |
| AspS9I | GGNCC | 1 cut(s) | 476 |
| AsuHPI | GGTGA | 3 cut(s) | 635, 643, 650 |
| AvaII | GGWCC | 1 cut(s) | 476 |
| AvrII | CCTAGG | 1 cut(s) | 572 |
| BaeGI | GKGCMC | 1 cut(s) | 418 |
| BanI | GGYRCC | 1 cut(s) | 429 |
| BanII | GRGCYC | 1 cut(s) | 309 |
| BbsI | GAAGAC | 2 cut(s) | 18, 221 |
| Bbv12I | GWGCWC | 1 cut(s) | 309 |
| BbvI | GCAGC | 1 cut(s) | 526 |
| BccI | CCATC | 3 cut(s) | 87, 241, 242 |
| BciT130I | CCWGG | 1 cut(s) | 636 |
| BciVI | GTATCC | 1 cut(s) | 451 |
| BcoDI | GTCTC | 1 cut(s) | 37 |
| BfaI | CTAG | 2 cut(s) | 83, 573 |
| BfmI | CTRYAG | 1 cut(s) | 279 |
| BfoI | RGCGCY | 1 cut(s) | 433 |
| BfuI | GTATCC | 1 cut(s) | 451 |
| BglII | AGATCT | 1 cut(s) | 371 |
| BisI | GCNGC | 3 cut(s) | 540, 552, 555 |
| BlnI | CCTAGG | 1 cut(s) | 572 |
| BlsI | GCNGC | 3 cut(s) | 541, 553, 556 |
| Bme1390I | CCNGG | 1 cut(s) | 636 |
| Bme18I | GGWCC | 1 cut(s) | 476 |
| BmgT120I | GGNCC | 1 cut(s) | 476 |
| BmiI | GGNNCC | 2 cut(s) | 431, 530 |
| BmrFI | CCNGG | 1 cut(s) | 636 |
| BmsI | GCATC | 1 cut(s) | 589 |
| BpiI | GAAGAC | 2 cut(s) | 18, 221 |
| BsaHI | GRCGYC | 2 cut(s) | 430, 630 |
| BsaI | GGTCTC | 1 cut(s) | 37 |
| BsaJI | CCNNGG | 3 cut(s) | 572, 603, 634 |
| BsaWI | WCCGGW | 1 cut(s) | 394 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 517, 574 |
| BseAI | TCCGGA | 1 cut(s) | 394 |
| BseBI | CCWGG | 1 cut(s) | 636 |
| BseDI | CCNNGG | 3 cut(s) | 572, 603, 634 |
| BseGI | GGATG | 2 cut(s) | 234, 345 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 517, 574 |
| BseMII | CTCAG | 1 cut(s) | 156 |
| BseSI | GKGCMC | 1 cut(s) | 418 |
| BseXI | GCAGC | 1 cut(s) | 526 |
| BshNI | GGYRCC | 1 cut(s) | 429 |
| BsiHKAI | GWGCWC | 1 cut(s) | 309 |
| BsiSI | CCGG | 1 cut(s) | 395 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 517, 574 |
| BsmAI | GTCTC | 1 cut(s) | 37 |
| Bso31I | GGTCTC | 1 cut(s) | 37 |
| Bsp1286I | GDGCHC | 2 cut(s) | 309, 418 |
| Bsp13I | TCCGGA | 1 cut(s) | 394 |
| Bsp143I | GATC | 2 cut(s) | 288, 371 |
| Bsp19I | CCATGG | 1 cut(s) | 603 |
| BspACI | CCGC | 2 cut(s) | 552, 555 |
| BspCNI | CTCAG | 1 cut(s) | 155 |
| BspEI | TCCGGA | 1 cut(s) | 394 |
| BspHI | TCATGA | 1 cut(s) | 301 |
| BspLI | GGNNCC | 2 cut(s) | 431, 530 |
| BspMAI | CTGCAG | 1 cut(s) | 283 |
| BspPI | GGATC | 1 cut(s) | 296 |
| BspQI | GCTCTTC | 1 cut(s) | 529 |
| BspT107I | GGYRCC | 1 cut(s) | 429 |
| BspTNI | GGTCTC | 1 cut(s) | 37 |
| BssECI | CCNNGG | 3 cut(s) | 572, 603, 634 |
| BssMI | GATC | 2 cut(s) | 288, 371 |
| BssNI | GRCGYC | 2 cut(s) | 430, 630 |
| BssT1I | CCWWGG | 2 cut(s) | 572, 603 |
| Bst2UI | CCWGG | 1 cut(s) | 636 |
| Bst6I | CTCTTC | 1 cut(s) | 529 |
| BstACI | GRCGYC | 2 cut(s) | 430, 630 |
| BstDEI | CTNAG | 4 cut(s) | 142, 255, 420, 452 |
| BstDSI | CCRYGG | 1 cut(s) | 603 |
| BstF5I | GGATG | 2 cut(s) | 234, 345 |
| BstH2I | RGCGCY | 1 cut(s) | 433 |
| BstHHI | GCGC | 1 cut(s) | 432 |
| BstKTI | GATC | 2 cut(s) | 291, 374 |
| BstMAI | GTCTC | 1 cut(s) | 37 |
| BstMBI | GATC | 2 cut(s) | 288, 371 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 436, 548 |
| BstNI | CCWGG | 1 cut(s) | 636 |
| BstSCI | CCNGG | 1 cut(s) | 634 |
| BstSFI | CTRYAG | 1 cut(s) | 279 |
| BstSLI | GKGCMC | 1 cut(s) | 418 |
| BstV1I | GCAGC | 1 cut(s) | 526 |
| BstV2I | GAAGAC | 2 cut(s) | 18, 221 |
| BstX2I | RGATCY | 1 cut(s) | 371 |
| BstYI | RGATCY | 1 cut(s) | 371 |
| BsuI | GTATCC | 1 cut(s) | 451 |
| BtgI | CCRYGG | 1 cut(s) | 603 |
| BtgZI | GCGATG | 1 cut(s) | 215 |
| BtsCI | GGATG | 2 cut(s) | 234, 345 |
| BtsIMutI | CAGTG | 1 cut(s) | 327 |
| CciI | TCATGA | 1 cut(s) | 301 |
| CfoI | GCGC | 1 cut(s) | 432 |
| Cfr13I | GGNCC | 1 cut(s) | 476 |
| CseI | GACGC | 1 cut(s) | 638 |
| Csp6I | GTAC | 1 cut(s) | 614 |
| CviAII | CATG | 6 cut(s) | 302, 338, 525, 596, 604, 620 |
| CviJI | RGCY | 6 cut(s) | 25, 102, 307, 317, 539, 551 |
| CviKI_1 | RGCY | 6 cut(s) | 25, 102, 307, 317, 539, 551 |
| CviQI | GTAC | 1 cut(s) | 614 |
| DdeI | CTNAG | 4 cut(s) | 142, 255, 420, 452 |
| DinI | GGCGCC | 1 cut(s) | 431 |
| DpnI | GATC | 2 cut(s) | 290, 373 |
| DpnII | GATC | 2 cut(s) | 288, 371 |
| Eam1104I | CTCTTC | 1 cut(s) | 529 |
| EarI | CTCTTC | 1 cut(s) | 529 |
| Ecl136II | GAGCTC | 1 cut(s) | 307 |
| Eco130I | CCWWGG | 2 cut(s) | 572, 603 |
| Eco24I | GRGCYC | 1 cut(s) | 309 |
| Eco31I | GGTCTC | 1 cut(s) | 37 |
| Eco47I | GGWCC | 1 cut(s) | 476 |
| Eco53kI | GAGCTC | 1 cut(s) | 307 |
| EcoICRI | GAGCTC | 1 cut(s) | 307 |
| EcoRI | GAATTC | 1 cut(s) | 173 |
| EcoRII | CCWGG | 1 cut(s) | 634 |
| EcoT14I | CCWWGG | 2 cut(s) | 572, 603 |
| EcoT38I | GRGCYC | 1 cut(s) | 309 |
| EgeI | GGCGCC | 1 cut(s) | 431 |
| EheI | GGCGCC | 1 cut(s) | 431 |
| ErhI | CCWWGG | 2 cut(s) | 572, 603 |
| FaeI | CATG | 6 cut(s) | 305, 341, 528, 599, 607, 623 |
| FatI | CATG | 6 cut(s) | 301, 337, 524, 595, 603, 619 |
| Fnu4HI | GCNGC | 3 cut(s) | 540, 552, 555 |
| FokI | GGATG | 2 cut(s) | 221, 332 |
| FriOI | GRGCYC | 1 cut(s) | 309 |
| Fsp4HI | GCNGC | 3 cut(s) | 540, 552, 555 |
| FspBI | CTAG | 2 cut(s) | 83, 573 |
| GlaI | GCGC | 1 cut(s) | 431 |
| GluI | GCNGC | 3 cut(s) | 540, 552, 555 |
| HaeII | RGCGCY | 1 cut(s) | 433 |
| HapII | CCGG | 1 cut(s) | 395 |
| HgaI | GACGC | 1 cut(s) | 638 |
| HhaI | GCGC | 1 cut(s) | 432 |
| Hin1I | GRCGYC | 2 cut(s) | 430, 630 |
| Hin1II | CATG | 6 cut(s) | 305, 341, 528, 599, 607, 623 |
| Hin6I | GCGC | 1 cut(s) | 430 |
| HinP1I | GCGC | 1 cut(s) | 430 |
| HincII | GTYRAC | 1 cut(s) | 580 |
| HindII | GTYRAC | 1 cut(s) | 580 |
| HinfI | GANTC | 3 cut(s) | 65, 217, 398 |
| HpaII | CCGG | 1 cut(s) | 395 |
| HphI | GGTGA | 3 cut(s) | 635, 643, 650 |
| Hpy166II | GTNNAC | 2 cut(s) | 562, 580 |
| Hpy188I | TCNGA | 2 cut(s) | 145, 679 |
| Hpy188III | TCNNGA | 6 cut(s) | 77, 131, 302, 369, 395, 474 |
| Hpy8I | GTNNAC | 2 cut(s) | 562, 580 |
| HpyAV | CCTTC | 5 cut(s) | 15, 238, 420, 494, 553 |
| HpyCH4IV | ACGT | 2 cut(s) | 57, 469 |
| HpyCH4V | TGCA | 2 cut(s) | 281, 647 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 436, 548 |
| HpyF3I | CTNAG | 4 cut(s) | 142, 255, 420, 452 |
| HpySE526I | ACGT | 2 cut(s) | 57, 469 |
| Hsp92I | GRCGYC | 2 cut(s) | 430, 630 |
| Hsp92II | CATG | 6 cut(s) | 305, 341, 528, 599, 607, 623 |
| HspAI | GCGC | 1 cut(s) | 430 |
| KasI | GGCGCC | 1 cut(s) | 429 |
| Kpn2I | TCCGGA | 1 cut(s) | 394 |
| Kzo9I | GATC | 2 cut(s) | 288, 371 |
| LguI | GCTCTTC | 1 cut(s) | 529 |
| LmnI | GCTCC | 1 cut(s) | 314 |
| LpnPI | CCDG | 8 cut(s) | 31, 90, 252, 267, 408, 459, 621, 648 |
| Lsp1109I | GCAGC | 1 cut(s) | 526 |
| LweI | GCATC | 1 cut(s) | 589 |
| MaeI | CTAG | 2 cut(s) | 83, 573 |
| MaeII | ACGT | 2 cut(s) | 57, 469 |
| MaeIII | GTNAC | 5 cut(s) | 62, 274, 325, 503, 649 |
| MalI | GATC | 2 cut(s) | 290, 373 |
| MboI | GATC | 2 cut(s) | 288, 371 |
| MboII | GAAGA | 5 cut(s) | 20, 23, 53, 226, 546 |
| MflI | RGATCY | 1 cut(s) | 371 |
| MhlI | GDGCHC | 2 cut(s) | 309, 418 |
| MluCI | AATT | 4 cut(s) | 173, 267, 364, 403 |
| Mly113I | GGCGCC | 1 cut(s) | 430 |
| MlyI | GAGTC | 2 cut(s) | 59, 211 |
| MroI | TCCGGA | 1 cut(s) | 394 |
| MroXI | GAANNNNTTC | 1 cut(s) | 150 |
| MseI | TTAA | 2 cut(s) | 159, 167 |
| MslI | CAYNNNNRTG | 2 cut(s) | 621, 624 |
| MspA1I | CMGCKG | 1 cut(s) | 557 |
| MspI | CCGG | 1 cut(s) | 395 |
| MspR9I | CCNGG | 1 cut(s) | 636 |
| MvaI | CCWGG | 1 cut(s) | 636 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 436, 548 |
| NarI | GGCGCC | 1 cut(s) | 430 |
| NcoI | CCATGG | 1 cut(s) | 603 |
| NdeII | GATC | 2 cut(s) | 288, 371 |
| NlaIII | CATG | 6 cut(s) | 305, 341, 528, 599, 607, 623 |
| NlaIV | GGNNCC | 2 cut(s) | 431, 530 |
| NmuCI | GTSAC | 3 cut(s) | 62, 325, 649 |
| PagI | TCATGA | 1 cut(s) | 301 |
| PciSI | GCTCTTC | 1 cut(s) | 529 |
| PdmI | GAANNNNTTC | 1 cut(s) | 150 |
| PfeI | GAWTC | 1 cut(s) | 398 |
| PflFI | GACNNNGTC | 1 cut(s) | 584 |
| PkrI | GCNGC | 3 cut(s) | 541, 553, 556 |
| PleI | GAGTC | 2 cut(s) | 59, 211 |
| PluTI | GGCGCC | 1 cut(s) | 433 |
| PpsI | GAGTC | 2 cut(s) | 59, 211 |
| Psp124BI | GAGCTC | 1 cut(s) | 309 |
| Psp6I | CCWGG | 1 cut(s) | 634 |
| PspGI | CCWGG | 1 cut(s) | 634 |
| PspN4I | GGNNCC | 2 cut(s) | 431, 530 |
| PspPI | GGNCC | 1 cut(s) | 476 |
| PstI | CTGCAG | 1 cut(s) | 283 |
| PsuI | RGATCY | 1 cut(s) | 371 |
| PsyI | GACNNNGTC | 1 cut(s) | 584 |
| RsaI | GTAC | 1 cut(s) | 615 |
| RsaNI | GTAC | 1 cut(s) | 614 |
| RseI | CAYNNNNRTG | 2 cut(s) | 621, 624 |
| SacI | GAGCTC | 1 cut(s) | 309 |
| SapI | GCTCTTC | 1 cut(s) | 529 |
| SaqAI | TTAA | 2 cut(s) | 159, 167 |
| SatI | GCNGC | 3 cut(s) | 540, 552, 555 |
| Sau3AI | GATC | 2 cut(s) | 288, 371 |
| Sau96I | GGNCC | 1 cut(s) | 476 |
| SchI | GAGTC | 2 cut(s) | 59, 211 |
| ScrFI | CCNGG | 1 cut(s) | 636 |
| SduI | GDGCHC | 2 cut(s) | 309, 418 |
| SfaNI | GCATC | 1 cut(s) | 589 |
| SfcI | CTRYAG | 1 cut(s) | 279 |
| SfoI | GGCGCC | 1 cut(s) | 431 |
| SinI | GGWCC | 1 cut(s) | 476 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 621, 624 |
| Sse9I | AATT | 4 cut(s) | 173, 267, 364, 403 |
| SsiI | CCGC | 2 cut(s) | 552, 555 |
| SspDI | GGCGCC | 1 cut(s) | 429 |
| SspMI | CTAG | 2 cut(s) | 83, 573 |
| SstI | GAGCTC | 1 cut(s) | 309 |
| StyD4I | CCNGG | 1 cut(s) | 634 |
| StyI | CCWWGG | 2 cut(s) | 572, 603 |
| TaiI | ACGT | 2 cut(s) | 60, 472 |
| TaqI | TCGA | 2 cut(s) | 265, 368 |
| TasI | AATT | 4 cut(s) | 173, 267, 364, 403 |
| TauI | GCSGC | 2 cut(s) | 554, 557 |
| TfiI | GAWTC | 1 cut(s) | 398 |
| Tru1I | TTAA | 2 cut(s) | 159, 167 |
| Tru9I | TTAA | 2 cut(s) | 159, 167 |
| TscAI | CASTG | 1 cut(s) | 334 |
| TseFI | GTSAC | 3 cut(s) | 62, 325, 649 |
| TseI | GCWGC | 1 cut(s) | 539 |
| Tsp45I | GTSAC | 3 cut(s) | 62, 325, 649 |
| TspDTI | ATGAA | 4 cut(s) | 17, 21, 290, 335 |
| TspGWI | ACGGA | 3 cut(s) | 50, 58, 301 |
| TspRI | CASTG | 1 cut(s) | 334 |
| Tth111I | GACNNNGTC | 1 cut(s) | 584 |
| VpaK11BI | GGWCC | 1 cut(s) | 476 |
| XapI | RAATTY | 1 cut(s) | 173 |
| XmaJI | CCTAGG | 1 cut(s) | 572 |
| XmnI | GAANNNNTTC | 1 cut(s) | 150 |
| XspI | CTAG | 2 cut(s) | 83, 573 |