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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 641, 686 |
| AccII | CGCG | 1 cut(s) | 768 |
| AciI | CCGC | 2 cut(s) | 79, 690 |
| AclWI | GGATC | 1 cut(s) | 551 |
| AcsI | RAATTY | 1 cut(s) | 428 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 610, 706 |
| AgsI | TTSAA | 2 cut(s) | 376, 815 |
| AjnI | CCWGG | 4 cut(s) | 105, 129, 272, 772 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AleI | CACNNNNGTG | 1 cut(s) | 366 |
| AluBI | AGCT | 5 cut(s) | 155, 161, 562, 572, 820 |
| AluI | AGCT | 5 cut(s) | 155, 161, 562, 572, 820 |
| Alw21I | GWGCWC | 1 cut(s) | 564 |
| Alw26I | GTCTC | 2 cut(s) | 292, 496 |
| AlwI | GGATC | 1 cut(s) | 551 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 2 cut(s) | 93, 824 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 1 cut(s) | 428 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AspLEI | GCGC | 1 cut(s) | 770 |
| AsuHPI | GGTGA | 3 cut(s) | 773, 781, 788 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AxyI | CCTNAGG | 1 cut(s) | 680 |
| BaeGI | GKGCMC | 1 cut(s) | 689 |
| BanI | GGYRCC | 2 cut(s) | 641, 686 |
| BanII | GRGCYC | 1 cut(s) | 564 |
| BbsI | GAAGAC | 2 cut(s) | 273, 476 |
| Bbv12I | GWGCWC | 1 cut(s) | 564 |
| BbvCI | CCTCAGC | 1 cut(s) | 281 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 7 cut(s) | 92, 215, 342, 496, 711, 741, 762 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 515, 549 |
| BciT130I | CCWGG | 4 cut(s) | 107, 131, 274, 774 |
| BcoDI | GTCTC | 2 cut(s) | 292, 496 |
| BfaI | CTAG | 3 cut(s) | 126, 338, 711 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 4 cut(s) | 107, 131, 274, 774 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmiI | GGNNCC | 2 cut(s) | 643, 688 |
| BmrFI | CCNGG | 4 cut(s) | 107, 131, 274, 774 |
| BmsI | GCATC | 2 cut(s) | 94, 442 |
| BpiI | GAAGAC | 2 cut(s) | 273, 476 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| Bpu10I | CCTNAGC | 2 cut(s) | 281, 821 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| Bsa29I | ATCGAT | 1 cut(s) | 525 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| BsaJI | CCNNGG | 3 cut(s) | 272, 741, 772 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 610, 706 |
| Bse1I | ACTGG | 2 cut(s) | 49, 244 |
| Bse21I | CCTNAGG | 1 cut(s) | 680 |
| BseBI | CCWGG | 4 cut(s) | 107, 131, 274, 774 |
| BseCI | ATCGAT | 1 cut(s) | 525 |
| BseDI | CCNNGG | 3 cut(s) | 272, 741, 772 |
| BseGI | GGATG | 2 cut(s) | 210, 238 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 610, 706 |
| BseMII | CTCAG | 3 cut(s) | 272, 507, 835 |
| BseNI | ACTGG | 2 cut(s) | 49, 244 |
| BseSI | GKGCMC | 1 cut(s) | 689 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| Bsh1236I | CGCG | 1 cut(s) | 768 |
| BshFI | GGCC | 2 cut(s) | 95, 826 |
| BshNI | GGYRCC | 2 cut(s) | 641, 686 |
| BshVI | ATCGAT | 1 cut(s) | 525 |
| BsiHKAI | GWGCWC | 1 cut(s) | 564 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 610, 706 |
| BsmAI | GTCTC | 2 cut(s) | 292, 496 |
| BsmBI | CGTCTC | 1 cut(s) | 496 |
| BsnI | GGCC | 2 cut(s) | 95, 826 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 2 cut(s) | 564, 689 |
| Bsp143I | GATC | 3 cut(s) | 444, 543, 763 |
| Bsp19I | CCATGG | 1 cut(s) | 741 |
| BspACI | CCGC | 2 cut(s) | 79, 690 |
| BspANI | GGCC | 2 cut(s) | 95, 826 |
| BspCNI | CTCAG | 3 cut(s) | 273, 506, 834 |
| BspDI | ATCGAT | 1 cut(s) | 525 |
| BspFNI | CGCG | 1 cut(s) | 768 |
| BspHI | TCATGA | 1 cut(s) | 556 |
| BspLI | GGNNCC | 2 cut(s) | 643, 688 |
| BspPI | GGATC | 1 cut(s) | 551 |
| BspT107I | GGYRCC | 2 cut(s) | 641, 686 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrI | ACTGG | 2 cut(s) | 49, 244 |
| BssECI | CCNNGG | 3 cut(s) | 272, 741, 772 |
| BssMI | GATC | 3 cut(s) | 444, 543, 763 |
| BssT1I | CCWWGG | 1 cut(s) | 741 |
| Bst2UI | CCWGG | 4 cut(s) | 107, 131, 274, 774 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstC8I | GCNNGC | 3 cut(s) | 83, 153, 718 |
| BstDEI | CTNAG | 5 cut(s) | 281, 493, 510, 680, 821 |
| BstDSI | CCRYGG | 1 cut(s) | 741 |
| BstF5I | GGATG | 2 cut(s) | 210, 238 |
| BstFNI | CGCG | 1 cut(s) | 768 |
| BstHHI | GCGC | 1 cut(s) | 770 |
| BstKTI | GATC | 3 cut(s) | 447, 546, 766 |
| BstMAI | GTCTC | 2 cut(s) | 292, 496 |
| BstMBI | GATC | 3 cut(s) | 444, 543, 763 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| BstNI | CCWGG | 4 cut(s) | 107, 131, 274, 774 |
| BstNSI | RCATGY | 1 cut(s) | 139 |
| BstSCI | CCNGG | 4 cut(s) | 105, 129, 272, 772 |
| BstSLI | GKGCMC | 1 cut(s) | 689 |
| BstUI | CGCG | 1 cut(s) | 768 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 476 |
| Bsu15I | ATCGAT | 1 cut(s) | 525 |
| Bsu36I | CCTNAGG | 1 cut(s) | 680 |
| BsuRI | GGCC | 2 cut(s) | 95, 826 |
| BsuTUI | ATCGAT | 1 cut(s) | 525 |
| BtgI | CCRYGG | 1 cut(s) | 741 |
| BtgZI | GCGATG | 1 cut(s) | 470 |
| BtsCI | GGATG | 2 cut(s) | 210, 238 |
| Cac8I | GCNNGC | 3 cut(s) | 83, 153, 718 |
| CciI | TCATGA | 1 cut(s) | 556 |
| CfoI | GCGC | 1 cut(s) | 770 |
| ClaI | ATCGAT | 1 cut(s) | 525 |
| CseI | GACGC | 1 cut(s) | 739 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 6 cut(s) | 136, 557, 593, 610, 742, 758 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 5 cut(s) | 281, 493, 510, 680, 821 |
| DpnI | GATC | 3 cut(s) | 446, 545, 765 |
| DpnII | GATC | 3 cut(s) | 444, 543, 763 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 562 |
| Eco130I | CCWWGG | 1 cut(s) | 741 |
| Eco147I | AGGCCT | 1 cut(s) | 826 |
| Eco24I | GRGCYC | 1 cut(s) | 564 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 1 cut(s) | 76 |
| Eco53kI | GAGCTC | 1 cut(s) | 562 |
| Eco81I | CCTNAGG | 1 cut(s) | 680 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoICRI | GAGCTC | 1 cut(s) | 562 |
| EcoRI | GAATTC | 1 cut(s) | 428 |
| EcoRII | CCWGG | 4 cut(s) | 105, 129, 272, 772 |
| EcoRV | GATATC | 1 cut(s) | 76 |
| EcoT14I | CCWWGG | 1 cut(s) | 741 |
| EcoT38I | GRGCYC | 1 cut(s) | 564 |
| ErhI | CCWWGG | 1 cut(s) | 741 |
| Esp3I | CGTCTC | 1 cut(s) | 496 |
| FaeI | CATG | 6 cut(s) | 139, 560, 596, 613, 745, 761 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 614, 646 |
| FatI | CATG | 6 cut(s) | 135, 556, 592, 609, 741, 757 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 2 cut(s) | 197, 245 |
| FriOI | GRGCYC | 1 cut(s) | 564 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 3 cut(s) | 126, 338, 711 |
| GlaI | GCGC | 1 cut(s) | 769 |
| GluI | GCNGC | 1 cut(s) | 180 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeIII | GGCC | 2 cut(s) | 95, 826 |
| HgaI | GACGC | 1 cut(s) | 739 |
| HhaI | GCGC | 1 cut(s) | 770 |
| Hin1II | CATG | 6 cut(s) | 139, 560, 596, 613, 745, 761 |
| Hin6I | GCGC | 1 cut(s) | 768 |
| HinP1I | GCGC | 1 cut(s) | 768 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 8 cut(s) | 102, 115, 220, 236, 320, 472, 522, 614 |
| HphI | GGTGA | 3 cut(s) | 773, 781, 788 |
| Hpy166II | GTNNAC | 1 cut(s) | 700 |
| Hpy188I | TCNGA | 2 cut(s) | 52, 400 |
| Hpy188III | TCNNGA | 3 cut(s) | 119, 332, 557 |
| Hpy8I | GTNNAC | 1 cut(s) | 700 |
| HpyAV | CCTTC | 1 cut(s) | 493 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 1 cut(s) | 312 |
| HpyCH4V | TGCA | 2 cut(s) | 536, 785 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| HpyF3I | CTNAG | 5 cut(s) | 281, 493, 510, 680, 821 |
| HpySE526I | ACGT | 1 cut(s) | 312 |
| Hsp92II | CATG | 6 cut(s) | 139, 560, 596, 613, 745, 761 |
| HspAI | GCGC | 1 cut(s) | 768 |
| Kzo9I | GATC | 3 cut(s) | 444, 543, 763 |
| LmnI | GCTCC | 3 cut(s) | 34, 246, 569 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 2 cut(s) | 94, 442 |
| MaeI | CTAG | 3 cut(s) | 126, 338, 711 |
| MaeII | ACGT | 1 cut(s) | 312 |
| MaeIII | GTNAC | 2 cut(s) | 317, 658 |
| MalI | GATC | 3 cut(s) | 446, 545, 765 |
| MboI | GATC | 3 cut(s) | 444, 543, 763 |
| MboII | GAAGA | 5 cut(s) | 275, 278, 308, 320, 481 |
| MhlI | GDGCHC | 2 cut(s) | 564, 689 |
| MluCI | AATT | 2 cut(s) | 17, 428 |
| MlyI | GAGTC | 3 cut(s) | 214, 314, 466 |
| MnlI | CCTC | 4 cut(s) | 270, 276, 368, 703 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MseI | TTAA | 3 cut(s) | 414, 422, 841 |
| MslI | CAYNNNNRTG | 4 cut(s) | 215, 231, 366, 759 |
| MspR9I | CCNGG | 4 cut(s) | 107, 131, 274, 774 |
| MvaI | CCWGG | 4 cut(s) | 107, 131, 274, 774 |
| MvnI | CGCG | 1 cut(s) | 768 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| NcoI | CCATGG | 1 cut(s) | 741 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 3 cut(s) | 444, 543, 763 |
| NlaIII | CATG | 6 cut(s) | 139, 560, 596, 613, 745, 761 |
| NlaIV | GGNNCC | 2 cut(s) | 643, 688 |
| NmuCI | GTSAC | 2 cut(s) | 317, 658 |
| NspI | RCATGY | 1 cut(s) | 139 |
| OliI | CACNNNNGTG | 1 cut(s) | 366 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 556 |
| PceI | AGGCCT | 1 cut(s) | 826 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 5 cut(s) | 102, 115, 236, 522, 614 |
| PfoI | TCCNGGA | 1 cut(s) | 105 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 3 cut(s) | 214, 314, 466 |
| PpsI | GAGTC | 3 cut(s) | 214, 314, 466 |
| Psp124BI | GAGCTC | 1 cut(s) | 564 |
| Psp6I | CCWGG | 4 cut(s) | 105, 129, 272, 772 |
| PspGI | CCWGG | 4 cut(s) | 105, 129, 272, 772 |
| PspN4I | GGNNCC | 2 cut(s) | 643, 688 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 4 cut(s) | 215, 231, 366, 759 |
| SacI | GAGCTC | 1 cut(s) | 564 |
| SaqAI | TTAA | 3 cut(s) | 414, 422, 841 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 3 cut(s) | 444, 543, 763 |
| SchI | GAGTC | 3 cut(s) | 214, 314, 466 |
| ScrFI | CCNGG | 4 cut(s) | 107, 131, 274, 774 |
| SduI | GDGCHC | 2 cut(s) | 564, 689 |
| SfaNI | GCATC | 2 cut(s) | 94, 442 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 215, 231, 366, 759 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 2 cut(s) | 17, 428 |
| SseBI | AGGCCT | 1 cut(s) | 826 |
| SsiI | CCGC | 2 cut(s) | 79, 690 |
| SspMI | CTAG | 3 cut(s) | 126, 338, 711 |
| SstI | GAGCTC | 1 cut(s) | 564 |
| StuI | AGGCCT | 1 cut(s) | 826 |
| StyD4I | CCNGG | 4 cut(s) | 105, 129, 272, 772 |
| StyI | CCWWGG | 1 cut(s) | 741 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 1 cut(s) | 315 |
| TaqI | TCGA | 4 cut(s) | 120, 294, 520, 525 |
| TasI | AATT | 2 cut(s) | 17, 428 |
| TfiI | GAWTC | 5 cut(s) | 102, 115, 236, 522, 614 |
| Tru1I | TTAA | 3 cut(s) | 414, 422, 841 |
| Tru9I | TTAA | 3 cut(s) | 414, 422, 841 |
| TseFI | GTSAC | 2 cut(s) | 317, 658 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 2 cut(s) | 317, 658 |
| TspDTI | ATGAA | 4 cut(s) | 272, 276, 545, 590 |
| TspGWI | ACGGA | 3 cut(s) | 305, 556, 685 |
| XapI | RAATTY | 1 cut(s) | 428 |
| XceI | RCATGY | 1 cut(s) | 139 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 635 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 3 cut(s) | 126, 338, 711 |