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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 34 |
| AccIII | TCCGGA | 1 cut(s) | 270 |
| AciI | CCGC | 4 cut(s) | 34, 211, 490, 568 |
| AcoI | YGGCCR | 1 cut(s) | 208 |
| AcsI | RAATTY | 1 cut(s) | 635 |
| AcvI | CACGTG | 1 cut(s) | 42 |
| AfaI | GTAC | 1 cut(s) | 455 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 33, 248 |
| AflIII | ACRYGT | 1 cut(s) | 231 |
| AgeI | ACCGGT | 1 cut(s) | 224 |
| AgsI | TTSAA | 1 cut(s) | 583 |
| AjiI | CACGTC | 3 cut(s) | 104, 162, 234 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 495, 527 |
| AleI | CACNNNNGTG | 1 cut(s) | 659 |
| AluBI | AGCT | 7 cut(s) | 239, 256, 321, 362, 368, 769, 779 |
| AluI | AGCT | 7 cut(s) | 239, 256, 321, 362, 368, 769, 779 |
| Alw21I | GWGCWC | 1 cut(s) | 771 |
| Alw26I | GTCTC | 2 cut(s) | 499, 703 |
| Aor13HI | TCCGGA | 1 cut(s) | 270 |
| AoxI | GGCC | 4 cut(s) | 35, 106, 127, 208 |
| ApeKI | GCWGC | 3 cut(s) | 45, 386, 487 |
| ApoI | RAATTY | 1 cut(s) | 635 |
| AsiGI | ACCGGT | 1 cut(s) | 224 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 612 |
| AspS9I | GGNCC | 3 cut(s) | 36, 107, 128 |
| AsuC2I | CCSGG | 1 cut(s) | 126 |
| AsuHPI | GGTGA | 4 cut(s) | 67, 162, 170, 239 |
| BanII | GRGCYC | 1 cut(s) | 771 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 66, 98 |
| BbrPI | CACGTG | 1 cut(s) | 42 |
| BbsI | GAAGAC | 2 cut(s) | 480, 683 |
| Bbv12I | GWGCWC | 1 cut(s) | 771 |
| BbvCI | CCTCAGC | 1 cut(s) | 218 |
| BbvI | GCAGC | 3 cut(s) | 57, 398, 474 |
| BccI | CCATC | 2 cut(s) | 422, 703 |
| BceAI | ACGGC | 1 cut(s) | 223 |
| BclI | TGATCA | 1 cut(s) | 355 |
| BcnI | CCSGG | 1 cut(s) | 126 |
| BcoDI | GTCTC | 2 cut(s) | 499, 703 |
| BfaI | CTAG | 2 cut(s) | 120, 318 |
| BfmI | CTRYAG | 1 cut(s) | 741 |
| BisI | GCNGC | 5 cut(s) | 35, 46, 211, 387, 488 |
| BlsI | GCNGC | 5 cut(s) | 36, 47, 212, 388, 489 |
| Bme1390I | CCNGG | 1 cut(s) | 126 |
| BmgBI | CACGTC | 3 cut(s) | 104, 162, 234 |
| BmgT120I | GGNCC | 3 cut(s) | 36, 107, 128 |
| BmrFI | CCNGG | 1 cut(s) | 126 |
| BmrI | ACTGGG | 1 cut(s) | 73 |
| BmuI | ACTGGG | 1 cut(s) | 73 |
| BpiI | GAAGAC | 2 cut(s) | 480, 683 |
| BpmI | CTGGAG | 2 cut(s) | 225, 434 |
| Bpu10I | CCTNAGC | 1 cut(s) | 218 |
| BpuEI | CTTGAG | 1 cut(s) | 348 |
| BpuMI | CCSGG | 1 cut(s) | 126 |
| Bsa29I | ATCGAT | 1 cut(s) | 732 |
| BsaAI | YACGTR | 1 cut(s) | 42 |
| BsaI | GGTCTC | 1 cut(s) | 499 |
| BsaWI | WCCGGW | 2 cut(s) | 224, 270 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 223, 253, 549, 579 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 33, 248 |
| Bse118I | RCCGGY | 1 cut(s) | 224 |
| Bse1I | ACTGG | 3 cut(s) | 79, 242, 451 |
| Bse3DI | GCAATG | 1 cut(s) | 523 |
| BseAI | TCCGGA | 1 cut(s) | 270 |
| BseCI | ATCGAT | 1 cut(s) | 732 |
| BseGI | GGATG | 5 cut(s) | 279, 346, 417, 445, 807 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 33, 248 |
| BseMI | GCAATG | 1 cut(s) | 523 |
| BseMII | CTCAG | 1 cut(s) | 232 |
| BseNI | ACTGG | 3 cut(s) | 79, 242, 451 |
| BseX3I | CGGCCG | 1 cut(s) | 208 |
| BseXI | GCAGC | 3 cut(s) | 57, 398, 474 |
| BsgI | GTGCAG | 1 cut(s) | 64 |
| Bsh1236I | CGCG | 1 cut(s) | 34 |
| Bsh1285I | CGRYCG | 1 cut(s) | 211 |
| BshFI | GGCC | 4 cut(s) | 37, 108, 129, 210 |
| BshTI | ACCGGT | 1 cut(s) | 224 |
| BshVI | ATCGAT | 1 cut(s) | 732 |
| BsiEI | CGRYCG | 1 cut(s) | 211 |
| BsiHKAI | GWGCWC | 1 cut(s) | 771 |
| BsiSI | CCGG | 3 cut(s) | 126, 225, 271 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 33, 248 |
| BsmAI | GTCTC | 2 cut(s) | 499, 703 |
| BsnI | GGCC | 4 cut(s) | 37, 108, 129, 210 |
| Bso31I | GGTCTC | 1 cut(s) | 499 |
| Bsp1286I | GDGCHC | 1 cut(s) | 771 |
| Bsp13I | TCCGGA | 1 cut(s) | 270 |
| Bsp143I | GATC | 4 cut(s) | 68, 355, 651, 750 |
| BspACI | CCGC | 4 cut(s) | 34, 211, 490, 568 |
| BspANI | GGCC | 4 cut(s) | 37, 108, 129, 210 |
| BspCNI | CTCAG | 1 cut(s) | 231 |
| BspDI | ATCGAT | 1 cut(s) | 732 |
| BspEI | TCCGGA | 1 cut(s) | 270 |
| BspFNI | CGCG | 1 cut(s) | 34 |
| BspHI | TCATGA | 1 cut(s) | 763 |
| BspTNI | GGTCTC | 1 cut(s) | 499 |
| BsrDI | GCAATG | 1 cut(s) | 523 |
| BsrFI | RCCGGY | 1 cut(s) | 224 |
| BsrI | ACTGG | 3 cut(s) | 79, 242, 451 |
| BssAI | RCCGGY | 1 cut(s) | 224 |
| BssMI | GATC | 4 cut(s) | 68, 355, 651, 750 |
| Bst4CI | ACNGT | 3 cut(s) | 186, 352, 742 |
| BstBAI | YACGTR | 1 cut(s) | 42 |
| BstC8I | GCNNGC | 1 cut(s) | 138 |
| BstDEI | CTNAG | 3 cut(s) | 218, 391, 544 |
| BstF5I | GGATG | 5 cut(s) | 279, 346, 417, 445, 807 |
| BstFNI | CGCG | 1 cut(s) | 34 |
| BstKTI | GATC | 4 cut(s) | 71, 358, 654, 753 |
| BstMAI | GTCTC | 2 cut(s) | 499, 703 |
| BstMBI | GATC | 4 cut(s) | 68, 355, 651, 750 |
| BstMCI | CGRYCG | 1 cut(s) | 211 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 142, 219, 374, 383 |
| BstSCI | CCNGG | 1 cut(s) | 124 |
| BstSFI | CTRYAG | 1 cut(s) | 741 |
| BstUI | CGCG | 1 cut(s) | 34 |
| BstV1I | GCAGC | 3 cut(s) | 57, 398, 474 |
| BstV2I | GAAGAC | 2 cut(s) | 480, 683 |
| BstZI | CGGCCG | 1 cut(s) | 208 |
| Bsu15I | ATCGAT | 1 cut(s) | 732 |
| BsuRI | GGCC | 4 cut(s) | 37, 108, 129, 210 |
| BsuTUI | ATCGAT | 1 cut(s) | 732 |
| BtrI | CACGTC | 3 cut(s) | 104, 162, 234 |
| BtsCI | GGATG | 5 cut(s) | 279, 346, 417, 445, 807 |
| BtsI | GCAGTG | 1 cut(s) | 131 |
| BtsIMutI | CAGTG | 1 cut(s) | 131 |
| Cac8I | GCNNGC | 1 cut(s) | 138 |
| CciI | TCATGA | 1 cut(s) | 763 |
| Cfr10I | RCCGGY | 1 cut(s) | 224 |
| Cfr13I | GGNCC | 3 cut(s) | 36, 107, 128 |
| ClaI | ATCGAT | 1 cut(s) | 732 |
| CseI | GACGC | 1 cut(s) | 40 |
| Csp6I | GTAC | 1 cut(s) | 454 |
| CspAI | ACCGGT | 1 cut(s) | 224 |
| CviAII | CATG | 2 cut(s) | 764, 800 |
| CviQI | GTAC | 1 cut(s) | 454 |
| DdeI | CTNAG | 3 cut(s) | 218, 391, 544 |
| DpnI | GATC | 4 cut(s) | 70, 357, 653, 752 |
| DpnII | GATC | 4 cut(s) | 68, 355, 651, 750 |
| EaeI | YGGCCR | 1 cut(s) | 208 |
| EagI | CGGCCG | 1 cut(s) | 208 |
| Ecl136II | GAGCTC | 1 cut(s) | 769 |
| EclXI | CGGCCG | 1 cut(s) | 208 |
| Eco24I | GRGCYC | 1 cut(s) | 771 |
| Eco31I | GGTCTC | 1 cut(s) | 499 |
| Eco32I | GATATC | 1 cut(s) | 329 |
| Eco52I | CGGCCG | 1 cut(s) | 208 |
| Eco53kI | GAGCTC | 1 cut(s) | 769 |
| Eco72I | CACGTG | 1 cut(s) | 42 |
| EcoICRI | GAGCTC | 1 cut(s) | 769 |
| EcoRI | GAATTC | 1 cut(s) | 635 |
| EcoRV | GATATC | 1 cut(s) | 329 |
| EcoT38I | GRGCYC | 1 cut(s) | 771 |
| FaeI | CATG | 2 cut(s) | 767, 803 |
| FaiI | YATR | 8 cut(s) | 175, 435, 437, 464, 561, 765, 782, 801 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 462, 494 |
| FatI | CATG | 2 cut(s) | 763, 799 |
| FauI | CCCGC | 1 cut(s) | 483 |
| FauNDI | CATATG | 1 cut(s) | 435 |
| FbaI | TGATCA | 1 cut(s) | 355 |
| Fnu4HI | GCNGC | 5 cut(s) | 35, 46, 211, 387, 488 |
| FokI | GGATG | 5 cut(s) | 286, 353, 404, 452, 794 |
| FriOI | GRGCYC | 1 cut(s) | 771 |
| Fsp4HI | GCNGC | 5 cut(s) | 35, 46, 211, 387, 488 |
| FspBI | CTAG | 2 cut(s) | 120, 318 |
| GluI | GCNGC | 5 cut(s) | 35, 46, 211, 387, 488 |
| GsuI | CTGGAG | 2 cut(s) | 225, 434 |
| HaeIII | GGCC | 4 cut(s) | 37, 108, 129, 210 |
| HapII | CCGG | 3 cut(s) | 126, 225, 271 |
| HgaI | GACGC | 1 cut(s) | 40 |
| Hin1II | CATG | 2 cut(s) | 767, 803 |
| HincII | GTYRAC | 1 cut(s) | 348 |
| HindII | GTYRAC | 1 cut(s) | 348 |
| HindIII | AAGCTT | 1 cut(s) | 366 |
| HinfI | GANTC | 4 cut(s) | 427, 443, 527, 679 |
| HpaI | GTTAAC | 1 cut(s) | 348 |
| HpaII | CCGG | 3 cut(s) | 126, 225, 271 |
| HphI | GGTGA | 4 cut(s) | 67, 162, 170, 239 |
| Hpy166II | GTNNAC | 1 cut(s) | 348 |
| Hpy188I | TCNGA | 2 cut(s) | 73, 607 |
| Hpy188III | TCNNGA | 5 cut(s) | 271, 324, 524, 593, 764 |
| Hpy8I | GTNNAC | 1 cut(s) | 348 |
| HpyAV | CCTTC | 1 cut(s) | 700 |
| HpyCH4III | ACNGT | 3 cut(s) | 186, 352, 742 |
| HpyCH4IV | ACGT | 4 cut(s) | 41, 103, 161, 233 |
| HpyCH4V | TGCA | 2 cut(s) | 45, 704 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 142, 219, 374, 383 |
| HpyF3I | CTNAG | 3 cut(s) | 218, 391, 544 |
| HpySE526I | ACGT | 4 cut(s) | 41, 103, 161, 233 |
| Hsp92II | CATG | 2 cut(s) | 767, 803 |
| Kpn2I | TCCGGA | 1 cut(s) | 270 |
| Ksp22I | TGATCA | 1 cut(s) | 355 |
| KspAI | GTTAAC | 1 cut(s) | 348 |
| Kzo9I | GATC | 4 cut(s) | 68, 355, 651, 750 |
| LmnI | GCTCC | 4 cut(s) | 244, 307, 453, 776 |
| Lsp1109I | GCAGC | 3 cut(s) | 57, 398, 474 |
| MaeI | CTAG | 2 cut(s) | 120, 318 |
| MaeII | ACGT | 4 cut(s) | 41, 103, 161, 233 |
| MaeIII | GTNAC | 6 cut(s) | 81, 227, 244, 278, 524, 736 |
| MalI | GATC | 4 cut(s) | 70, 357, 653, 752 |
| MboI | GATC | 4 cut(s) | 68, 355, 651, 750 |
| MboII | GAAGA | 6 cut(s) | 78, 482, 485, 515, 688, 829 |
| MhlI | GDGCHC | 1 cut(s) | 771 |
| MluCI | AATT | 3 cut(s) | 290, 635, 826 |
| MlyI | GAGTC | 3 cut(s) | 421, 521, 673 |
| MnlI | CCTC | 6 cut(s) | 51, 178, 227, 388, 548, 575 |
| MroI | TCCGGA | 1 cut(s) | 270 |
| MroXI | GAANNNNTTC | 1 cut(s) | 612 |
| MseI | TTAA | 3 cut(s) | 347, 480, 621 |
| MslI | CAYNNNNRTG | 4 cut(s) | 422, 438, 659, 812 |
| MspI | CCGG | 3 cut(s) | 126, 225, 271 |
| MspR9I | CCNGG | 1 cut(s) | 126 |
| MvnI | CGCG | 1 cut(s) | 34 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 142, 219, 374, 383 |
| NciI | CCSGG | 1 cut(s) | 126 |
| NdeI | CATATG | 1 cut(s) | 435 |
| NdeII | GATC | 4 cut(s) | 68, 355, 651, 750 |
| NlaIII | CATG | 2 cut(s) | 767, 803 |
| NmuCI | GTSAC | 2 cut(s) | 227, 524 |
| OliI | CACNNNNGTG | 1 cut(s) | 659 |
| PagI | TCATGA | 1 cut(s) | 763 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 38 |
| PdmI | GAANNNNTTC | 1 cut(s) | 612 |
| PfeI | GAWTC | 1 cut(s) | 443 |
| PinAI | ACCGGT | 1 cut(s) | 224 |
| PkrI | GCNGC | 5 cut(s) | 36, 47, 212, 388, 489 |
| PleI | GAGTC | 3 cut(s) | 421, 521, 673 |
| PmaCI | CACGTG | 1 cut(s) | 42 |
| PmlI | CACGTG | 1 cut(s) | 42 |
| PpsI | GAGTC | 3 cut(s) | 421, 521, 673 |
| Ppu21I | YACGTR | 1 cut(s) | 42 |
| Psp124BI | GAGCTC | 1 cut(s) | 771 |
| PspCI | CACGTG | 1 cut(s) | 42 |
| PspPI | GGNCC | 3 cut(s) | 36, 107, 128 |
| RsaI | GTAC | 1 cut(s) | 455 |
| RsaNI | GTAC | 1 cut(s) | 454 |
| RseI | CAYNNNNRTG | 4 cut(s) | 422, 438, 659, 812 |
| SacI | GAGCTC | 1 cut(s) | 771 |
| SaqAI | TTAA | 3 cut(s) | 347, 480, 621 |
| SatI | GCNGC | 5 cut(s) | 35, 46, 211, 387, 488 |
| Sau3AI | GATC | 4 cut(s) | 68, 355, 651, 750 |
| Sau96I | GGNCC | 3 cut(s) | 36, 107, 128 |
| SchI | GAGTC | 3 cut(s) | 421, 521, 673 |
| ScrFI | CCNGG | 1 cut(s) | 126 |
| SduI | GDGCHC | 1 cut(s) | 771 |
| SfcI | CTRYAG | 1 cut(s) | 741 |
| SgrAI | CRCCGGYG | 1 cut(s) | 224 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 422, 438, 659, 812 |
| SmlI | CTYRAG | 1 cut(s) | 363 |
| SmoI | CTYRAG | 1 cut(s) | 363 |
| Sse9I | AATT | 3 cut(s) | 290, 635, 826 |
| SsiI | CCGC | 4 cut(s) | 34, 211, 490, 568 |
| SspMI | CTAG | 2 cut(s) | 120, 318 |
| SstI | GAGCTC | 1 cut(s) | 771 |
| StyD4I | CCNGG | 1 cut(s) | 124 |
| TaaI | ACNGT | 3 cut(s) | 186, 352, 742 |
| TaiI | ACGT | 4 cut(s) | 44, 106, 164, 236 |
| TaqI | TCGA | 2 cut(s) | 501, 732 |
| TasI | AATT | 3 cut(s) | 290, 635, 826 |
| TatI | WGTACW | 1 cut(s) | 453 |
| TauI | GCSGC | 2 cut(s) | 37, 213 |
| TfiI | GAWTC | 1 cut(s) | 443 |
| Tru1I | TTAA | 3 cut(s) | 347, 480, 621 |
| Tru9I | TTAA | 3 cut(s) | 347, 480, 621 |
| TscAI | CASTG | 1 cut(s) | 138 |
| TseFI | GTSAC | 2 cut(s) | 227, 524 |
| TseI | GCWGC | 3 cut(s) | 45, 386, 487 |
| Tsp45I | GTSAC | 2 cut(s) | 227, 524 |
| TspDTI | ATGAA | 4 cut(s) | 479, 483, 752, 797 |
| TspGWI | ACGGA | 1 cut(s) | 616 |
| TspRI | CASTG | 1 cut(s) | 138 |
| XapI | RAATTY | 1 cut(s) | 635 |
| XmnI | GAANNNNTTC | 1 cut(s) | 612 |
| XspI | CTAG | 2 cut(s) | 120, 318 |