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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 513 |
| Acc36I | ACCTGC | 1 cut(s) | 642 |
| AccB1I | GGYRCC | 2 cut(s) | 468, 539 |
| AccI | GTMKAC | 1 cut(s) | 552 |
| AciI | CCGC | 2 cut(s) | 145, 543 |
| AclWI | GGATC | 1 cut(s) | 405 |
| AcsI | RAATTY | 1 cut(s) | 212 |
| AcyI | GRCGYC | 1 cut(s) | 469 |
| AfaI | GTAC | 1 cut(s) | 32 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 565, 569 |
| AgsI | TTSAA | 2 cut(s) | 160, 641 |
| AjnI | CCWGG | 1 cut(s) | 562 |
| AluBI | AGCT | 2 cut(s) | 346, 356 |
| AluI | AGCT | 2 cut(s) | 346, 356 |
| Alw21I | GWGCWC | 1 cut(s) | 348 |
| Alw26I | GTCTC | 1 cut(s) | 76 |
| AlwI | GGATC | 1 cut(s) | 405 |
| ApeKI | GCWGC | 1 cut(s) | 620 |
| ApoI | RAATTY | 1 cut(s) | 212 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspLEI | GCGC | 1 cut(s) | 471 |
| AspS9I | GGNCC | 1 cut(s) | 515 |
| AsuHPI | GGTGA | 2 cut(s) | 619, 626 |
| AvaII | GGWCC | 1 cut(s) | 515 |
| AxyI | CCTNAGG | 1 cut(s) | 459 |
| BaeGI | GKGCMC | 1 cut(s) | 542 |
| BanI | GGYRCC | 2 cut(s) | 468, 539 |
| BanII | GRGCYC | 1 cut(s) | 348 |
| BbsI | GAAGAC | 2 cut(s) | 57, 260 |
| Bbv12I | GWGCWC | 1 cut(s) | 348 |
| BbvI | GCAGC | 1 cut(s) | 607 |
| BccI | CCATC | 4 cut(s) | 126, 280, 281, 615 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 299, 333 |
| BciT130I | CCWGG | 1 cut(s) | 564 |
| BciVI | GTATCC | 1 cut(s) | 490 |
| BcoDI | GTCTC | 1 cut(s) | 76 |
| BfaI | CTAG | 1 cut(s) | 122 |
| BfoI | RGCGCY | 1 cut(s) | 472 |
| BfuAI | ACCTGC | 1 cut(s) | 642 |
| BfuI | GTATCC | 1 cut(s) | 490 |
| BisI | GCNGC | 1 cut(s) | 621 |
| BlsI | GCNGC | 1 cut(s) | 622 |
| Bme1390I | CCNGG | 1 cut(s) | 564 |
| Bme18I | GGWCC | 1 cut(s) | 515 |
| BmgT120I | GGNCC | 1 cut(s) | 515 |
| BmiI | GGNNCC | 2 cut(s) | 470, 541 |
| BmrFI | CCNGG | 1 cut(s) | 564 |
| BmsI | GCATC | 1 cut(s) | 607 |
| BpiI | GAAGAC | 2 cut(s) | 57, 260 |
| BpmI | CTGGAG | 1 cut(s) | 11 |
| Bsa29I | ATCGAT | 1 cut(s) | 309 |
| BsaHI | GRCGYC | 1 cut(s) | 469 |
| BsaI | GGTCTC | 1 cut(s) | 76 |
| BsaJI | CCNNGG | 3 cut(s) | 414, 563, 594 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 565, 569 |
| Bse1I | ACTGG | 1 cut(s) | 28 |
| Bse21I | CCTNAGG | 1 cut(s) | 459 |
| BseBI | CCWGG | 1 cut(s) | 564 |
| BseCI | ATCGAT | 1 cut(s) | 309 |
| BseDI | CCNNGG | 3 cut(s) | 414, 563, 594 |
| BseGI | GGATG | 1 cut(s) | 22 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 565, 569 |
| BseNI | ACTGG | 1 cut(s) | 28 |
| BseSI | GKGCMC | 1 cut(s) | 542 |
| BseXI | GCAGC | 1 cut(s) | 607 |
| BshNI | GGYRCC | 2 cut(s) | 468, 539 |
| BshVI | ATCGAT | 1 cut(s) | 309 |
| BsiHKAI | GWGCWC | 1 cut(s) | 348 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 565, 569 |
| BsmAI | GTCTC | 1 cut(s) | 76 |
| Bso31I | GGTCTC | 1 cut(s) | 76 |
| Bsp1286I | GDGCHC | 2 cut(s) | 348, 542 |
| Bsp143I | GATC | 2 cut(s) | 228, 410 |
| Bsp19I | CCATGG | 1 cut(s) | 594 |
| BspACI | CCGC | 2 cut(s) | 145, 543 |
| BspDI | ATCGAT | 1 cut(s) | 309 |
| BspHI | TCATGA | 1 cut(s) | 340 |
| BspLI | GGNNCC | 2 cut(s) | 470, 541 |
| BspMI | ACCTGC | 1 cut(s) | 642 |
| BspPI | GGATC | 1 cut(s) | 405 |
| BspT107I | GGYRCC | 2 cut(s) | 468, 539 |
| BspTNI | GGTCTC | 1 cut(s) | 76 |
| BsrI | ACTGG | 1 cut(s) | 28 |
| BssECI | CCNNGG | 3 cut(s) | 414, 563, 594 |
| BssMI | GATC | 2 cut(s) | 228, 410 |
| BssNI | GRCGYC | 1 cut(s) | 469 |
| BssT1I | CCWWGG | 1 cut(s) | 594 |
| Bst2UI | CCWGG | 1 cut(s) | 564 |
| Bst4CI | ACNGT | 1 cut(s) | 577 |
| BstACI | GRCGYC | 1 cut(s) | 469 |
| BstC8I | GCNNGC | 1 cut(s) | 571 |
| BstDEI | CTNAG | 3 cut(s) | 294, 459, 491 |
| BstDSI | CCRYGG | 2 cut(s) | 414, 594 |
| BstF5I | GGATG | 1 cut(s) | 22 |
| BstH2I | RGCGCY | 1 cut(s) | 472 |
| BstHHI | GCGC | 1 cut(s) | 471 |
| BstKTI | GATC | 2 cut(s) | 231, 413 |
| BstMAI | GTCTC | 1 cut(s) | 76 |
| BstMBI | GATC | 2 cut(s) | 228, 410 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 475 |
| BstNI | CCWGG | 1 cut(s) | 564 |
| BstSCI | CCNGG | 1 cut(s) | 562 |
| BstSLI | GKGCMC | 1 cut(s) | 542 |
| BstV1I | GCAGC | 1 cut(s) | 607 |
| BstV2I | GAAGAC | 2 cut(s) | 57, 260 |
| BstX2I | RGATCY | 1 cut(s) | 410 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 563 |
| BstYI | RGATCY | 1 cut(s) | 410 |
| Bsu15I | ATCGAT | 1 cut(s) | 309 |
| Bsu36I | CCTNAGG | 1 cut(s) | 459 |
| BsuI | GTATCC | 1 cut(s) | 490 |
| BsuTUI | ATCGAT | 1 cut(s) | 309 |
| BtgI | CCRYGG | 2 cut(s) | 414, 594 |
| BtgZI | GCGATG | 1 cut(s) | 254 |
| BtsCI | GGATG | 1 cut(s) | 22 |
| BveI | ACCTGC | 1 cut(s) | 642 |
| Cac8I | GCNNGC | 1 cut(s) | 571 |
| CciI | TCATGA | 1 cut(s) | 340 |
| CfoI | GCGC | 1 cut(s) | 471 |
| Cfr13I | GGNCC | 1 cut(s) | 515 |
| ClaI | ATCGAT | 1 cut(s) | 309 |
| CseI | GACGC | 1 cut(s) | 592 |
| Csp6I | GTAC | 1 cut(s) | 31 |
| CviAII | CATG | 5 cut(s) | 341, 377, 587, 595, 611 |
| CviJI | RGCY | 6 cut(s) | 64, 141, 346, 356, 562, 569 |
| CviKI_1 | RGCY | 6 cut(s) | 64, 141, 346, 356, 562, 569 |
| CviQI | GTAC | 1 cut(s) | 31 |
| DdeI | CTNAG | 3 cut(s) | 294, 459, 491 |
| DinI | GGCGCC | 1 cut(s) | 470 |
| DpnI | GATC | 2 cut(s) | 230, 412 |
| DpnII | GATC | 2 cut(s) | 228, 410 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 513 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 513 |
| Ecl136II | GAGCTC | 1 cut(s) | 346 |
| Eco130I | CCWWGG | 1 cut(s) | 594 |
| Eco24I | GRGCYC | 1 cut(s) | 348 |
| Eco31I | GGTCTC | 1 cut(s) | 76 |
| Eco47I | GGWCC | 1 cut(s) | 515 |
| Eco53kI | GAGCTC | 1 cut(s) | 346 |
| Eco81I | CCTNAGG | 1 cut(s) | 459 |
| EcoICRI | GAGCTC | 1 cut(s) | 346 |
| EcoRII | CCWGG | 1 cut(s) | 562 |
| EcoT14I | CCWWGG | 1 cut(s) | 594 |
| EcoT38I | GRGCYC | 1 cut(s) | 348 |
| EgeI | GGCGCC | 1 cut(s) | 470 |
| EheI | GGCGCC | 1 cut(s) | 470 |
| ErhI | CCWWGG | 1 cut(s) | 594 |
| FaeI | CATG | 5 cut(s) | 344, 380, 590, 598, 614 |
| FatI | CATG | 5 cut(s) | 340, 376, 586, 594, 610 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| FblI | GTMKAC | 1 cut(s) | 552 |
| Fnu4HI | GCNGC | 1 cut(s) | 621 |
| FokI | GGATG | 1 cut(s) | 29 |
| FriOI | GRGCYC | 1 cut(s) | 348 |
| Fsp4HI | GCNGC | 1 cut(s) | 621 |
| FspBI | CTAG | 1 cut(s) | 122 |
| GlaI | GCGC | 1 cut(s) | 470 |
| GluI | GCNGC | 1 cut(s) | 621 |
| GsuI | CTGGAG | 1 cut(s) | 11 |
| HaeII | RGCGCY | 1 cut(s) | 472 |
| HgaI | GACGC | 1 cut(s) | 592 |
| HhaI | GCGC | 1 cut(s) | 471 |
| Hin1I | GRCGYC | 1 cut(s) | 469 |
| Hin1II | CATG | 5 cut(s) | 344, 380, 590, 598, 614 |
| Hin6I | GCGC | 1 cut(s) | 469 |
| HinP1I | GCGC | 1 cut(s) | 469 |
| HinfI | GANTC | 6 cut(s) | 4, 104, 256, 306, 327, 437 |
| HphI | GGTGA | 2 cut(s) | 619, 626 |
| Hpy166II | GTNNAC | 1 cut(s) | 553 |
| Hpy188I | TCNGA | 1 cut(s) | 184 |
| Hpy188III | TCNNGA | 6 cut(s) | 116, 170, 341, 408, 434, 504 |
| Hpy8I | GTNNAC | 1 cut(s) | 553 |
| HpyAV | CCTTC | 2 cut(s) | 54, 459 |
| HpyCH4III | ACNGT | 1 cut(s) | 577 |
| HpyCH4IV | ACGT | 1 cut(s) | 508 |
| HpyCH4V | TGCA | 3 cut(s) | 281, 320, 623 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 475 |
| HpyF3I | CTNAG | 3 cut(s) | 294, 459, 491 |
| HpySE526I | ACGT | 1 cut(s) | 508 |
| Hsp92I | GRCGYC | 1 cut(s) | 469 |
| Hsp92II | CATG | 5 cut(s) | 344, 380, 590, 598, 614 |
| HspAI | GCGC | 1 cut(s) | 469 |
| KasI | GGCGCC | 1 cut(s) | 468 |
| Kzo9I | GATC | 2 cut(s) | 228, 410 |
| LmnI | GCTCC | 2 cut(s) | 30, 353 |
| Lsp1109I | GCAGC | 1 cut(s) | 607 |
| LweI | GCATC | 1 cut(s) | 607 |
| MaeI | CTAG | 1 cut(s) | 122 |
| MaeII | ACGT | 1 cut(s) | 508 |
| MaeIII | GTNAC | 3 cut(s) | 101, 313, 449 |
| MalI | GATC | 2 cut(s) | 230, 412 |
| MboI | GATC | 2 cut(s) | 228, 410 |
| MboII | GAAGA | 5 cut(s) | 59, 62, 92, 265, 406 |
| MflI | RGATCY | 1 cut(s) | 410 |
| MhlI | GDGCHC | 2 cut(s) | 348, 542 |
| MluCI | AATT | 4 cut(s) | 212, 298, 403, 442 |
| Mly113I | GGCGCC | 1 cut(s) | 469 |
| MlyI | GAGTC | 2 cut(s) | 98, 250 |
| MnlI | CCTC | 2 cut(s) | 152, 556 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MseI | TTAA | 2 cut(s) | 198, 206 |
| MslI | CAYNNNNRTG | 4 cut(s) | 15, 389, 612, 615 |
| MspR9I | CCNGG | 1 cut(s) | 564 |
| MvaI | CCWGG | 1 cut(s) | 564 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 475 |
| NarI | GGCGCC | 1 cut(s) | 469 |
| NcoI | CCATGG | 1 cut(s) | 594 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 2 cut(s) | 228, 410 |
| NlaIII | CATG | 5 cut(s) | 344, 380, 590, 598, 614 |
| NlaIV | GGNNCC | 2 cut(s) | 470, 541 |
| NmuCI | GTSAC | 2 cut(s) | 101, 449 |
| PagI | TCATGA | 1 cut(s) | 340 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PfeI | GAWTC | 3 cut(s) | 306, 327, 437 |
| PkrI | GCNGC | 1 cut(s) | 622 |
| PleI | GAGTC | 2 cut(s) | 98, 250 |
| PluTI | GGCGCC | 1 cut(s) | 472 |
| PpsI | GAGTC | 2 cut(s) | 98, 250 |
| Psp124BI | GAGCTC | 1 cut(s) | 348 |
| Psp6I | CCWGG | 1 cut(s) | 562 |
| PspGI | CCWGG | 1 cut(s) | 562 |
| PspN4I | GGNNCC | 2 cut(s) | 470, 541 |
| PspPI | GGNCC | 1 cut(s) | 515 |
| PsuI | RGATCY | 1 cut(s) | 410 |
| RsaI | GTAC | 1 cut(s) | 32 |
| RsaNI | GTAC | 1 cut(s) | 31 |
| RseI | CAYNNNNRTG | 4 cut(s) | 15, 389, 612, 615 |
| SacI | GAGCTC | 1 cut(s) | 348 |
| SaqAI | TTAA | 2 cut(s) | 198, 206 |
| SatI | GCNGC | 1 cut(s) | 621 |
| Sau3AI | GATC | 2 cut(s) | 228, 410 |
| Sau96I | GGNCC | 1 cut(s) | 515 |
| SchI | GAGTC | 2 cut(s) | 98, 250 |
| ScrFI | CCNGG | 1 cut(s) | 564 |
| SduI | GDGCHC | 2 cut(s) | 348, 542 |
| SetI | ASST | 6 cut(s) | 123, 338, 348, 358, 511, 636 |
| SfaNI | GCATC | 1 cut(s) | 607 |
| SfoI | GGCGCC | 1 cut(s) | 470 |
| SinI | GGWCC | 1 cut(s) | 515 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 15, 389, 612, 615 |
| Sse9I | AATT | 4 cut(s) | 212, 298, 403, 442 |
| SsiI | CCGC | 2 cut(s) | 145, 543 |
| SspDI | GGCGCC | 1 cut(s) | 468 |
| SspMI | CTAG | 1 cut(s) | 122 |
| SstI | GAGCTC | 1 cut(s) | 348 |
| StyD4I | CCNGG | 1 cut(s) | 562 |
| StyI | CCWWGG | 1 cut(s) | 594 |
| TaaI | ACNGT | 1 cut(s) | 577 |
| TaiI | ACGT | 1 cut(s) | 511 |
| TaqI | TCGA | 4 cut(s) | 78, 304, 309, 407 |
| TasI | AATT | 4 cut(s) | 212, 298, 403, 442 |
| TatI | WGTACW | 1 cut(s) | 30 |
| TfiI | GAWTC | 3 cut(s) | 306, 327, 437 |
| Tru1I | TTAA | 2 cut(s) | 198, 206 |
| Tru9I | TTAA | 2 cut(s) | 198, 206 |
| TseFI | GTSAC | 2 cut(s) | 101, 449 |
| TseI | GCWGC | 1 cut(s) | 620 |
| Tsp45I | GTSAC | 2 cut(s) | 101, 449 |
| TspDTI | ATGAA | 5 cut(s) | 56, 60, 224, 329, 374 |
| TspGWI | ACGGA | 2 cut(s) | 403, 538 |
| VpaK11BI | GGWCC | 1 cut(s) | 515 |
| XapI | RAATTY | 1 cut(s) | 212 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 566 |
| XmiI | GTMKAC | 1 cut(s) | 552 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 1 cut(s) | 122 |