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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 762 |
| AarI | CACCTGC | 1 cut(s) | 189 |
| Acc36I | ACCTGC | 1 cut(s) | 189 |
| AciI | CCGC | 5 cut(s) | 56, 119, 207, 331, 613 |
| AclWI | GGATC | 2 cut(s) | 803, 873 |
| AcoI | YGGCCR | 1 cut(s) | 158 |
| AcsI | RAATTY | 2 cut(s) | 234, 680 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 213, 932 |
| AgeI | ACCGGT | 2 cut(s) | 198, 316 |
| AgsI | TTSAA | 4 cut(s) | 63, 174, 292, 628 |
| AjnI | CCWGG | 1 cut(s) | 381 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 540, 572 |
| AluBI | AGCT | 4 cut(s) | 407, 413, 814, 824 |
| AluI | AGCT | 4 cut(s) | 407, 413, 814, 824 |
| Alw21I | GWGCWC | 1 cut(s) | 816 |
| Alw26I | GTCTC | 2 cut(s) | 544, 748 |
| AlwI | GGATC | 2 cut(s) | 803, 873 |
| Ama87I | CYCGRG | 1 cut(s) | 371 |
| AoxI | GGCC | 3 cut(s) | 158, 298, 345 |
| ApeKI | GCWGC | 3 cut(s) | 53, 184, 431 |
| ApoI | RAATTY | 2 cut(s) | 234, 680 |
| AsiGI | ACCGGT | 2 cut(s) | 198, 316 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 657 |
| AspLEI | GCGC | 2 cut(s) | 53, 923 |
| AsuC2I | CCSGG | 1 cut(s) | 359 |
| AsuHPI | GGTGA | 1 cut(s) | 196 |
| AvaI | CYCGRG | 1 cut(s) | 371 |
| BanII | GRGCYC | 1 cut(s) | 816 |
| BbsI | GAAGAC | 2 cut(s) | 525, 728 |
| Bbv12I | GWGCWC | 1 cut(s) | 816 |
| BbvI | GCAGC | 3 cut(s) | 40, 196, 443 |
| BccI | CCATC | 5 cut(s) | 41, 344, 467, 594, 748 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 767, 801 |
| BciT130I | CCWGG | 1 cut(s) | 383 |
| BciVI | GTATCC | 1 cut(s) | 355 |
| BcnI | CCSGG | 1 cut(s) | 359 |
| BcoDI | GTCTC | 2 cut(s) | 544, 748 |
| BfaI | CTAG | 3 cut(s) | 110, 378, 590 |
| BfmI | CTRYAG | 2 cut(s) | 182, 786 |
| BfoI | RGCGCY | 1 cut(s) | 54 |
| BfuAI | ACCTGC | 1 cut(s) | 189 |
| BfuI | GTATCC | 1 cut(s) | 355 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 440 |
| BglII | AGATCT | 1 cut(s) | 272 |
| BisI | GCNGC | 4 cut(s) | 54, 120, 185, 432 |
| BlsI | GCNGC | 4 cut(s) | 55, 121, 186, 433 |
| Bme1390I | CCNGG | 2 cut(s) | 359, 383 |
| BmeT110I | CYCGRG | 1 cut(s) | 371 |
| BmiI | GGNNCC | 2 cut(s) | 13, 938 |
| BmrFI | CCNGG | 2 cut(s) | 359, 383 |
| BmsI | GCATC | 1 cut(s) | 694 |
| BpiI | GAAGAC | 2 cut(s) | 525, 728 |
| BpuEI | CTTGAG | 1 cut(s) | 393 |
| BpuMI | CCSGG | 1 cut(s) | 359 |
| Bsa29I | ATCGAT | 1 cut(s) | 777 |
| BsaI | GGTCTC | 1 cut(s) | 544 |
| BsaWI | WCCGGW | 3 cut(s) | 140, 198, 316 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 213, 932 |
| Bse118I | RCCGGY | 4 cut(s) | 156, 198, 296, 316 |
| BseBI | CCWGG | 1 cut(s) | 383 |
| BseCI | ATCGAT | 1 cut(s) | 777 |
| BseGI | GGATG | 4 cut(s) | 52, 462, 490, 852 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 213, 932 |
| BseRI | GAGGAG | 1 cut(s) | 106 |
| BseXI | GCAGC | 3 cut(s) | 40, 196, 443 |
| BshFI | GGCC | 3 cut(s) | 160, 300, 347 |
| BshTI | ACCGGT | 2 cut(s) | 198, 316 |
| BshVI | ATCGAT | 1 cut(s) | 777 |
| BsiHKAI | GWGCWC | 1 cut(s) | 816 |
| BsiHKCI | CYCGRG | 1 cut(s) | 371 |
| BsiSI | CCGG | 6 cut(s) | 141, 157, 199, 297, 317, 359 |
| BslFI | GGGAC | 1 cut(s) | 63 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 213, 932 |
| BsmAI | GTCTC | 2 cut(s) | 544, 748 |
| BsmBI | CGTCTC | 1 cut(s) | 748 |
| BsmFI | GGGAC | 1 cut(s) | 63 |
| BsnI | GGCC | 3 cut(s) | 160, 300, 347 |
| Bso31I | GGTCTC | 1 cut(s) | 544 |
| BsoBI | CYCGRG | 1 cut(s) | 371 |
| Bsp1286I | GDGCHC | 1 cut(s) | 816 |
| Bsp143I | GATC | 4 cut(s) | 272, 696, 795, 878 |
| BspACI | CCGC | 5 cut(s) | 56, 119, 207, 331, 613 |
| BspANI | GGCC | 3 cut(s) | 160, 300, 347 |
| BspDI | ATCGAT | 1 cut(s) | 777 |
| BspHI | TCATGA | 1 cut(s) | 808 |
| BspLI | GGNNCC | 2 cut(s) | 13, 938 |
| BspMAI | CTGCAG | 2 cut(s) | 186, 790 |
| BspMI | ACCTGC | 1 cut(s) | 189 |
| BspPI | GGATC | 2 cut(s) | 803, 873 |
| BspTNI | GGTCTC | 1 cut(s) | 544 |
| BsrFI | RCCGGY | 4 cut(s) | 156, 198, 296, 316 |
| BssAI | RCCGGY | 4 cut(s) | 156, 198, 296, 316 |
| BssMI | GATC | 4 cut(s) | 272, 696, 795, 878 |
| Bst2UI | CCWGG | 1 cut(s) | 383 |
| Bst4CI | ACNGT | 1 cut(s) | 397 |
| Bst6I | CTCTTC | 1 cut(s) | 36 |
| BstC8I | GCNNGC | 2 cut(s) | 335, 405 |
| BstDEI | CTNAG | 2 cut(s) | 436, 927 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 930 |
| BstF5I | GGATG | 4 cut(s) | 52, 462, 490, 852 |
| BstH2I | RGCGCY | 1 cut(s) | 54 |
| BstHHI | GCGC | 2 cut(s) | 53, 923 |
| BstKTI | GATC | 4 cut(s) | 275, 699, 798, 881 |
| BstMAI | GTCTC | 2 cut(s) | 544, 748 |
| BstMBI | GATC | 4 cut(s) | 272, 696, 795, 878 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 419, 428, 440 |
| BstNI | CCWGG | 1 cut(s) | 383 |
| BstSCI | CCNGG | 2 cut(s) | 357, 381 |
| BstSFI | CTRYAG | 2 cut(s) | 182, 786 |
| BstV1I | GCAGC | 3 cut(s) | 40, 196, 443 |
| BstV2I | GAAGAC | 2 cut(s) | 525, 728 |
| BstX2I | RGATCY | 2 cut(s) | 272, 878 |
| BstYI | RGATCY | 2 cut(s) | 272, 878 |
| Bsu15I | ATCGAT | 1 cut(s) | 777 |
| BsuI | GTATCC | 1 cut(s) | 355 |
| BsuRI | GGCC | 3 cut(s) | 160, 300, 347 |
| BsuTUI | ATCGAT | 1 cut(s) | 777 |
| BtgZI | GCGATG | 1 cut(s) | 722 |
| BtsCI | GGATG | 4 cut(s) | 52, 462, 490, 852 |
| BtsIMutI | CAGTG | 1 cut(s) | 309 |
| BveI | ACCTGC | 1 cut(s) | 189 |
| Cac8I | GCNNGC | 2 cut(s) | 335, 405 |
| CciI | TCATGA | 1 cut(s) | 808 |
| CfoI | GCGC | 2 cut(s) | 53, 923 |
| Cfr10I | RCCGGY | 4 cut(s) | 156, 198, 296, 316 |
| ClaI | ATCGAT | 1 cut(s) | 777 |
| CspAI | ACCGGT | 2 cut(s) | 198, 316 |
| CviAII | CATG | 3 cut(s) | 88, 809, 845 |
| DdeI | CTNAG | 2 cut(s) | 436, 927 |
| DpnI | GATC | 4 cut(s) | 274, 698, 797, 880 |
| DpnII | GATC | 4 cut(s) | 272, 696, 795, 878 |
| EaeI | YGGCCR | 1 cut(s) | 158 |
| Eam1104I | CTCTTC | 1 cut(s) | 36 |
| EarI | CTCTTC | 1 cut(s) | 36 |
| EciI | GGCGGA | 1 cut(s) | 320 |
| Ecl136II | GAGCTC | 1 cut(s) | 814 |
| Eco24I | GRGCYC | 1 cut(s) | 816 |
| Eco31I | GGTCTC | 1 cut(s) | 544 |
| Eco53kI | GAGCTC | 1 cut(s) | 814 |
| Eco88I | CYCGRG | 1 cut(s) | 371 |
| EcoICRI | GAGCTC | 1 cut(s) | 814 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 930 |
| EcoRII | CCWGG | 1 cut(s) | 381 |
| EcoT38I | GRGCYC | 1 cut(s) | 816 |
| Esp3I | CGTCTC | 1 cut(s) | 748 |
| FaeI | CATG | 3 cut(s) | 91, 812, 848 |
| FaqI | GGGAC | 1 cut(s) | 63 |
| FatI | CATG | 3 cut(s) | 87, 808, 844 |
| FauI | CCCGC | 1 cut(s) | 49 |
| FauNDI | CATATG | 1 cut(s) | 480 |
| Fnu4HI | GCNGC | 4 cut(s) | 54, 120, 185, 432 |
| FokI | GGATG | 4 cut(s) | 59, 449, 497, 839 |
| FriOI | GRGCYC | 1 cut(s) | 816 |
| Fsp4HI | GCNGC | 4 cut(s) | 54, 120, 185, 432 |
| FspBI | CTAG | 3 cut(s) | 110, 378, 590 |
| GlaI | GCGC | 2 cut(s) | 52, 922 |
| GluI | GCNGC | 4 cut(s) | 54, 120, 185, 432 |
| HaeII | RGCGCY | 1 cut(s) | 54 |
| HaeIII | GGCC | 3 cut(s) | 160, 300, 347 |
| HapII | CCGG | 6 cut(s) | 141, 157, 199, 297, 317, 359 |
| HhaI | GCGC | 2 cut(s) | 53, 923 |
| Hin1II | CATG | 3 cut(s) | 91, 812, 848 |
| Hin6I | GCGC | 2 cut(s) | 51, 921 |
| HinP1I | GCGC | 2 cut(s) | 51, 921 |
| HindIII | AAGCTT | 1 cut(s) | 411 |
| HpaII | CCGG | 6 cut(s) | 141, 157, 199, 297, 317, 359 |
| HphI | GGTGA | 1 cut(s) | 196 |
| Hpy166II | GTNNAC | 1 cut(s) | 204 |
| Hpy188I | TCNGA | 1 cut(s) | 904 |
| Hpy188III | TCNNGA | 8 cut(s) | 15, 110, 270, 371, 584, 638, 809, 876 |
| Hpy8I | GTNNAC | 1 cut(s) | 204 |
| HpyAV | CCTTC | 2 cut(s) | 522, 745 |
| HpyCH4III | ACNGT | 1 cut(s) | 397 |
| HpyCH4IV | ACGT | 1 cut(s) | 564 |
| HpyCH4V | TGCA | 3 cut(s) | 184, 278, 788 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 419, 428, 440 |
| HpyF3I | CTNAG | 2 cut(s) | 436, 927 |
| HpySE526I | ACGT | 1 cut(s) | 564 |
| Hsp92II | CATG | 3 cut(s) | 91, 812, 848 |
| HspAI | GCGC | 2 cut(s) | 51, 921 |
| Kzo9I | GATC | 4 cut(s) | 272, 696, 795, 878 |
| LmnI | GCTCC | 4 cut(s) | 17, 498, 821, 936 |
| Lsp1109I | GCAGC | 3 cut(s) | 40, 196, 443 |
| LweI | GCATC | 1 cut(s) | 694 |
| MaeI | CTAG | 3 cut(s) | 110, 378, 590 |
| MaeII | ACGT | 1 cut(s) | 564 |
| MaeIII | GTNAC | 4 cut(s) | 307, 560, 569, 781 |
| MalI | GATC | 4 cut(s) | 274, 698, 797, 880 |
| MboI | GATC | 4 cut(s) | 272, 696, 795, 878 |
| MboII | GAAGA | 7 cut(s) | 50, 53, 162, 527, 530, 560, 733 |
| MfeI | CAATTG | 1 cut(s) | 223 |
| MflI | RGATCY | 2 cut(s) | 272, 878 |
| MhlI | GDGCHC | 1 cut(s) | 816 |
| MluCI | AATT | 6 cut(s) | 223, 234, 366, 680, 871, 910 |
| MlyI | GAGTC | 3 cut(s) | 466, 566, 718 |
| MnlI | CCTC | 7 cut(s) | 11, 37, 84, 433, 620, 749, 926 |
| MroXI | GAANNNNTTC | 1 cut(s) | 657 |
| MseI | TTAA | 1 cut(s) | 666 |
| MslI | CAYNNNNRTG | 2 cut(s) | 467, 483 |
| MspI | CCGG | 6 cut(s) | 141, 157, 199, 297, 317, 359 |
| MspR9I | CCNGG | 2 cut(s) | 359, 383 |
| MunI | CAATTG | 1 cut(s) | 223 |
| MvaI | CCWGG | 1 cut(s) | 383 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 419, 428, 440 |
| NciI | CCSGG | 1 cut(s) | 359 |
| NdeI | CATATG | 1 cut(s) | 480 |
| NdeII | GATC | 4 cut(s) | 272, 696, 795, 878 |
| NlaIII | CATG | 3 cut(s) | 91, 812, 848 |
| NlaIV | GGNNCC | 2 cut(s) | 13, 938 |
| NmuCI | GTSAC | 2 cut(s) | 307, 569 |
| PaeR7I | CTCGAG | 1 cut(s) | 371 |
| PagI | TCATGA | 1 cut(s) | 808 |
| PaqCI | CACCTGC | 1 cut(s) | 189 |
| PdmI | GAANNNNTTC | 1 cut(s) | 657 |
| PfeI | GAWTC | 7 cut(s) | 96, 106, 167, 354, 488, 774, 905 |
| PfoI | TCCNGGA | 1 cut(s) | 357 |
| PinAI | ACCGGT | 2 cut(s) | 198, 316 |
| PkrI | GCNGC | 4 cut(s) | 55, 121, 186, 433 |
| PleI | GAGTC | 3 cut(s) | 466, 566, 718 |
| PpsI | GAGTC | 3 cut(s) | 466, 566, 718 |
| PsiI | TTATAA | 1 cut(s) | 762 |
| Psp124BI | GAGCTC | 1 cut(s) | 816 |
| Psp6I | CCWGG | 1 cut(s) | 381 |
| PspGI | CCWGG | 1 cut(s) | 381 |
| PspN4I | GGNNCC | 2 cut(s) | 13, 938 |
| PstI | CTGCAG | 2 cut(s) | 186, 790 |
| PsuI | RGATCY | 2 cut(s) | 272, 878 |
| RseI | CAYNNNNRTG | 2 cut(s) | 467, 483 |
| SacI | GAGCTC | 1 cut(s) | 816 |
| SaqAI | TTAA | 1 cut(s) | 666 |
| SatI | GCNGC | 4 cut(s) | 54, 120, 185, 432 |
| Sau3AI | GATC | 4 cut(s) | 272, 696, 795, 878 |
| SchI | GAGTC | 3 cut(s) | 466, 566, 718 |
| ScrFI | CCNGG | 2 cut(s) | 359, 383 |
| SduI | GDGCHC | 1 cut(s) | 816 |
| SfaNI | GCATC | 1 cut(s) | 694 |
| SfcI | CTRYAG | 2 cut(s) | 182, 786 |
| Sfr274I | CTCGAG | 1 cut(s) | 371 |
| SlaI | CTCGAG | 1 cut(s) | 371 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 467, 483 |
| SmlI | CTYRAG | 2 cut(s) | 371, 408 |
| SmoI | CTYRAG | 2 cut(s) | 371, 408 |
| Sse9I | AATT | 6 cut(s) | 223, 234, 366, 680, 871, 910 |
| SsiI | CCGC | 5 cut(s) | 56, 119, 207, 331, 613 |
| SspI | AATATT | 1 cut(s) | 192 |
| SspMI | CTAG | 3 cut(s) | 110, 378, 590 |
| SstI | GAGCTC | 1 cut(s) | 816 |
| StyD4I | CCNGG | 2 cut(s) | 357, 381 |
| TaaI | ACNGT | 1 cut(s) | 397 |
| TaiI | ACGT | 1 cut(s) | 567 |
| TaqI | TCGA | 5 cut(s) | 372, 546, 772, 777, 875 |
| TasI | AATT | 6 cut(s) | 223, 234, 366, 680, 871, 910 |
| TauI | GCSGC | 1 cut(s) | 122 |
| TfiI | GAWTC | 7 cut(s) | 96, 106, 167, 354, 488, 774, 905 |
| Tru1I | TTAA | 1 cut(s) | 666 |
| Tru9I | TTAA | 1 cut(s) | 666 |
| TscAI | CASTG | 1 cut(s) | 316 |
| TseFI | GTSAC | 2 cut(s) | 307, 569 |
| TseI | GCWGC | 3 cut(s) | 53, 184, 431 |
| Tsp45I | GTSAC | 2 cut(s) | 307, 569 |
| TspDTI | ATGAA | 7 cut(s) | 51, 524, 528, 650, 692, 797, 842 |
| TspGWI | ACGGA | 3 cut(s) | 557, 808, 871 |
| TspRI | CASTG | 1 cut(s) | 316 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 930 |
| XapI | RAATTY | 2 cut(s) | 234, 680 |
| XbaI | TCTAGA | 1 cut(s) | 109 |
| XhoI | CTCGAG | 1 cut(s) | 371 |
| XmnI | GAANNNNTTC | 1 cut(s) | 657 |
| XspI | CTAG | 3 cut(s) | 110, 378, 590 |