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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 470 |
| AccB1I | GGYRCC | 2 cut(s) | 425, 583 |
| AccII | CGCG | 1 cut(s) | 411 |
| AccIII | TCCGGA | 1 cut(s) | 391 |
| AciI | CCGC | 1 cut(s) | 103 |
| AclI | AACGTT | 1 cut(s) | 53 |
| AclWI | GGATC | 1 cut(s) | 363 |
| AcoI | YGGCCR | 1 cut(s) | 570 |
| AcsI | RAATTY | 1 cut(s) | 170 |
| AcyI | GRCGYC | 2 cut(s) | 426, 584 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 421 |
| AgsI | TTSAA | 1 cut(s) | 118 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 29, 61 |
| AluBI | AGCT | 2 cut(s) | 304, 314 |
| AluI | AGCT | 2 cut(s) | 304, 314 |
| Alw26I | GTCTC | 2 cut(s) | 33, 238 |
| AlwI | GGATC | 1 cut(s) | 363 |
| Aor13HI | TCCGGA | 1 cut(s) | 391 |
| AoxI | GGCC | 1 cut(s) | 570 |
| ApoI | RAATTY | 1 cut(s) | 170 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 147 |
| AspLEI | GCGC | 3 cut(s) | 413, 428, 586 |
| AspS9I | GGNCC | 1 cut(s) | 472 |
| AvaII | GGWCC | 1 cut(s) | 472 |
| BalI | TGGCCA | 1 cut(s) | 572 |
| BanI | GGYRCC | 2 cut(s) | 425, 583 |
| BbsI | GAAGAC | 2 cut(s) | 14, 218 |
| BccI | CCATC | 2 cut(s) | 84, 238 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 257, 291 |
| BciVI | GTATCC | 1 cut(s) | 447 |
| BcoDI | GTCTC | 2 cut(s) | 33, 238 |
| BfaI | CTAG | 1 cut(s) | 80 |
| BfoI | RGCGCY | 2 cut(s) | 429, 587 |
| BfuI | GTATCC | 1 cut(s) | 447 |
| Bme18I | GGWCC | 1 cut(s) | 472 |
| BmgT120I | GGNCC | 1 cut(s) | 472 |
| BmiI | GGNNCC | 3 cut(s) | 427, 526, 585 |
| BpiI | GAAGAC | 2 cut(s) | 14, 218 |
| Bsa29I | ATCGAT | 1 cut(s) | 267 |
| BsaHI | GRCGYC | 2 cut(s) | 426, 584 |
| BsaI | GGTCTC | 1 cut(s) | 33 |
| BsaJI | CCNNGG | 1 cut(s) | 372 |
| BsaWI | WCCGGW | 1 cut(s) | 391 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 421 |
| BseAI | TCCGGA | 1 cut(s) | 391 |
| BseCI | ATCGAT | 1 cut(s) | 267 |
| BseDI | CCNNGG | 1 cut(s) | 372 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 421 |
| Bsh1236I | CGCG | 1 cut(s) | 411 |
| BshFI | GGCC | 1 cut(s) | 572 |
| BshNI | GGYRCC | 2 cut(s) | 425, 583 |
| BshVI | ATCGAT | 1 cut(s) | 267 |
| BsiSI | CCGG | 1 cut(s) | 392 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 421 |
| BsmAI | GTCTC | 2 cut(s) | 33, 238 |
| BsmBI | CGTCTC | 1 cut(s) | 238 |
| BsnI | GGCC | 1 cut(s) | 572 |
| Bso31I | GGTCTC | 1 cut(s) | 33 |
| Bsp13I | TCCGGA | 1 cut(s) | 391 |
| Bsp143I | GATC | 2 cut(s) | 186, 368 |
| BspACI | CCGC | 1 cut(s) | 103 |
| BspANI | GGCC | 1 cut(s) | 572 |
| BspDI | ATCGAT | 1 cut(s) | 267 |
| BspEI | TCCGGA | 1 cut(s) | 391 |
| BspFNI | CGCG | 1 cut(s) | 411 |
| BspHI | TCATGA | 1 cut(s) | 298 |
| BspLI | GGNNCC | 3 cut(s) | 427, 526, 585 |
| BspPI | GGATC | 1 cut(s) | 363 |
| BspT107I | GGYRCC | 2 cut(s) | 425, 583 |
| BspTNI | GGTCTC | 1 cut(s) | 33 |
| BssECI | CCNNGG | 1 cut(s) | 372 |
| BssMI | GATC | 2 cut(s) | 186, 368 |
| BssNI | GRCGYC | 2 cut(s) | 426, 584 |
| Bst4CI | ACNGT | 1 cut(s) | 459 |
| Bst6I | CTCTTC | 1 cut(s) | 525 |
| BstACI | GRCGYC | 2 cut(s) | 426, 584 |
| BstC8I | GCNNGC | 1 cut(s) | 582 |
| BstDEI | CTNAG | 3 cut(s) | 252, 448, 596 |
| BstDSI | CCRYGG | 1 cut(s) | 372 |
| BstFNI | CGCG | 1 cut(s) | 411 |
| BstH2I | RGCGCY | 2 cut(s) | 429, 587 |
| BstHHI | GCGC | 3 cut(s) | 413, 428, 586 |
| BstKTI | GATC | 2 cut(s) | 189, 371 |
| BstMAI | GTCTC | 2 cut(s) | 33, 238 |
| BstMBI | GATC | 2 cut(s) | 186, 368 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 432 |
| BstUI | CGCG | 1 cut(s) | 411 |
| BstV2I | GAAGAC | 2 cut(s) | 14, 218 |
| BstX2I | RGATCY | 1 cut(s) | 368 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 580 |
| BstYI | RGATCY | 1 cut(s) | 368 |
| Bsu15I | ATCGAT | 1 cut(s) | 267 |
| BsuI | GTATCC | 1 cut(s) | 447 |
| BsuRI | GGCC | 1 cut(s) | 572 |
| BsuTUI | ATCGAT | 1 cut(s) | 267 |
| BtgI | CCRYGG | 1 cut(s) | 372 |
| BtgZI | GCGATG | 1 cut(s) | 212 |
| BtsIMutI | CAGTG | 1 cut(s) | 324 |
| Cac8I | GCNNGC | 1 cut(s) | 582 |
| CciI | TCATGA | 1 cut(s) | 298 |
| CfoI | GCGC | 3 cut(s) | 413, 428, 586 |
| Cfr13I | GGNCC | 1 cut(s) | 472 |
| ClaI | ATCGAT | 1 cut(s) | 267 |
| CviAII | CATG | 5 cut(s) | 67, 299, 335, 541, 574 |
| CviJI | RGCY | 5 cut(s) | 99, 304, 314, 572, 602 |
| CviKI_1 | RGCY | 5 cut(s) | 99, 304, 314, 572, 602 |
| DdeI | CTNAG | 3 cut(s) | 252, 448, 596 |
| DinI | GGCGCC | 2 cut(s) | 427, 585 |
| DpnI | GATC | 2 cut(s) | 188, 370 |
| DpnII | GATC | 2 cut(s) | 186, 368 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 470 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 470 |
| EaeI | YGGCCR | 1 cut(s) | 570 |
| Eam1104I | CTCTTC | 1 cut(s) | 525 |
| EarI | CTCTTC | 1 cut(s) | 525 |
| Eco31I | GGTCTC | 1 cut(s) | 33 |
| Eco47I | GGWCC | 1 cut(s) | 472 |
| EcoRI | GAATTC | 1 cut(s) | 170 |
| EgeI | GGCGCC | 2 cut(s) | 427, 585 |
| EheI | GGCGCC | 2 cut(s) | 427, 585 |
| Esp3I | CGTCTC | 1 cut(s) | 238 |
| FaeI | CATG | 5 cut(s) | 70, 302, 338, 544, 577 |
| FatI | CATG | 5 cut(s) | 66, 298, 334, 540, 573 |
| FspBI | CTAG | 1 cut(s) | 80 |
| GlaI | GCGC | 3 cut(s) | 412, 427, 585 |
| HaeII | RGCGCY | 2 cut(s) | 429, 587 |
| HaeIII | GGCC | 1 cut(s) | 572 |
| HapII | CCGG | 1 cut(s) | 392 |
| HhaI | GCGC | 3 cut(s) | 413, 428, 586 |
| Hin1I | GRCGYC | 2 cut(s) | 426, 584 |
| Hin1II | CATG | 5 cut(s) | 70, 302, 338, 544, 577 |
| Hin6I | GCGC | 3 cut(s) | 411, 426, 584 |
| HinP1I | GCGC | 3 cut(s) | 411, 426, 584 |
| HincII | GTYRAC | 1 cut(s) | 538 |
| HindII | GTYRAC | 1 cut(s) | 538 |
| HinfI | GANTC | 6 cut(s) | 61, 214, 264, 285, 319, 395 |
| HpaII | CCGG | 1 cut(s) | 392 |
| Hpy166II | GTNNAC | 1 cut(s) | 538 |
| Hpy188I | TCNGA | 1 cut(s) | 142 |
| Hpy188III | TCNNGA | 6 cut(s) | 58, 74, 128, 299, 366, 392 |
| Hpy8I | GTNNAC | 1 cut(s) | 538 |
| HpyAV | CCTTC | 1 cut(s) | 235 |
| HpyCH4III | ACNGT | 1 cut(s) | 459 |
| HpyCH4IV | ACGT | 2 cut(s) | 53, 465 |
| HpyCH4V | TGCA | 2 cut(s) | 239, 278 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 432 |
| HpyF3I | CTNAG | 3 cut(s) | 252, 448, 596 |
| HpySE526I | ACGT | 2 cut(s) | 53, 465 |
| Hsp92I | GRCGYC | 2 cut(s) | 426, 584 |
| Hsp92II | CATG | 5 cut(s) | 70, 302, 338, 544, 577 |
| HspAI | GCGC | 3 cut(s) | 411, 426, 584 |
| KasI | GGCGCC | 2 cut(s) | 425, 583 |
| Kpn2I | TCCGGA | 1 cut(s) | 391 |
| Kzo9I | GATC | 2 cut(s) | 186, 368 |
| LmnI | GCTCC | 1 cut(s) | 311 |
| LpnPI | CCDG | 5 cut(s) | 87, 405, 455, 554, 566 |
| MaeI | CTAG | 1 cut(s) | 80 |
| MaeII | ACGT | 2 cut(s) | 53, 465 |
| MaeIII | GTNAC | 2 cut(s) | 58, 499 |
| MalI | GATC | 2 cut(s) | 188, 370 |
| MboI | GATC | 2 cut(s) | 186, 368 |
| MboII | GAAGA | 6 cut(s) | 16, 19, 49, 223, 364, 542 |
| MflI | RGATCY | 1 cut(s) | 368 |
| MlsI | TGGCCA | 1 cut(s) | 572 |
| MluCI | AATT | 3 cut(s) | 170, 361, 400 |
| MluNI | TGGCCA | 1 cut(s) | 572 |
| Mly113I | GGCGCC | 2 cut(s) | 426, 584 |
| MlyI | GAGTC | 3 cut(s) | 55, 208, 279 |
| MmeI | TCCRAC | 1 cut(s) | 441 |
| MnlI | CCTC | 5 cut(s) | 110, 415, 526, 546, 576 |
| Mox20I | TGGCCA | 1 cut(s) | 572 |
| MroI | TCCGGA | 1 cut(s) | 391 |
| MroXI | GAANNNNTTC | 1 cut(s) | 147 |
| MscI | TGGCCA | 1 cut(s) | 572 |
| MseI | TTAA | 2 cut(s) | 156, 164 |
| MslI | CAYNNNNRTG | 1 cut(s) | 347 |
| Msp20I | TGGCCA | 1 cut(s) | 572 |
| MspI | CCGG | 1 cut(s) | 392 |
| MvnI | CGCG | 1 cut(s) | 411 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 432 |
| NarI | GGCGCC | 2 cut(s) | 426, 584 |
| NdeII | GATC | 2 cut(s) | 186, 368 |
| NlaIII | CATG | 5 cut(s) | 70, 302, 338, 544, 577 |
| NlaIV | GGNNCC | 3 cut(s) | 427, 526, 585 |
| NmuCI | GTSAC | 1 cut(s) | 58 |
| PagI | TCATGA | 1 cut(s) | 298 |
| PdmI | GAANNNNTTC | 1 cut(s) | 147 |
| PfeI | GAWTC | 3 cut(s) | 264, 319, 395 |
| PleI | GAGTC | 3 cut(s) | 55, 208, 279 |
| PluTI | GGCGCC | 2 cut(s) | 429, 587 |
| PpsI | GAGTC | 3 cut(s) | 55, 208, 279 |
| Psp1406I | AACGTT | 1 cut(s) | 53 |
| PspN4I | GGNNCC | 3 cut(s) | 427, 526, 585 |
| PspPI | GGNCC | 1 cut(s) | 472 |
| PsuI | RGATCY | 1 cut(s) | 368 |
| RseI | CAYNNNNRTG | 1 cut(s) | 347 |
| SaqAI | TTAA | 2 cut(s) | 156, 164 |
| Sau3AI | GATC | 2 cut(s) | 186, 368 |
| Sau96I | GGNCC | 1 cut(s) | 472 |
| SchI | GAGTC | 3 cut(s) | 55, 208, 279 |
| SetI | ASST | 9 cut(s) | 22, 56, 81, 227, 296, 306, 316, 468, 537 |
| SfoI | GGCGCC | 2 cut(s) | 427, 585 |
| SinI | GGWCC | 1 cut(s) | 472 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 347 |
| Sse9I | AATT | 3 cut(s) | 170, 361, 400 |
| SsiI | CCGC | 1 cut(s) | 103 |
| SspDI | GGCGCC | 2 cut(s) | 425, 583 |
| SspMI | CTAG | 1 cut(s) | 80 |
| TaaI | ACNGT | 1 cut(s) | 459 |
| TaiI | ACGT | 2 cut(s) | 56, 468 |
| TaqI | TCGA | 4 cut(s) | 35, 262, 267, 365 |
| TasI | AATT | 3 cut(s) | 170, 361, 400 |
| TfiI | GAWTC | 3 cut(s) | 264, 319, 395 |
| Tru1I | TTAA | 2 cut(s) | 156, 164 |
| Tru9I | TTAA | 2 cut(s) | 156, 164 |
| TscAI | CASTG | 1 cut(s) | 331 |
| TseFI | GTSAC | 1 cut(s) | 58 |
| Tsp45I | GTSAC | 1 cut(s) | 58 |
| TspDTI | ATGAA | 3 cut(s) | 17, 287, 332 |
| TspGWI | ACGGA | 2 cut(s) | 361, 537 |
| TspRI | CASTG | 1 cut(s) | 331 |
| VpaK11BI | GGWCC | 1 cut(s) | 472 |
| XapI | RAATTY | 1 cut(s) | 170 |
| XmnI | GAANNNNTTC | 1 cut(s) | 147 |
| XspI | CTAG | 1 cut(s) | 80 |