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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 340 |
| AccII | CGCG | 1 cut(s) | 107 |
| AciI | CCGC | 8 cut(s) | 53, 107, 167, 201, 204, 523, 763, 837 |
| AclI | AACGTT | 1 cut(s) | 714 |
| AclWI | GGATC | 3 cut(s) | 52, 65, 665 |
| AcoI | YGGCCR | 1 cut(s) | 164 |
| AcsI | RAATTY | 1 cut(s) | 830 |
| AfaI | GTAC | 3 cut(s) | 71, 656, 786 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 173, 385, 556 |
| AflII | CTTAAG | 1 cut(s) | 533 |
| AgsI | TTSAA | 3 cut(s) | 37, 698, 778 |
| AjnI | CCWGG | 1 cut(s) | 549 |
| AluBI | AGCT | 3 cut(s) | 257, 492, 581 |
| AluI | AGCT | 3 cut(s) | 257, 492, 581 |
| Alw26I | GTCTC | 1 cut(s) | 898 |
| AlwI | GGATC | 3 cut(s) | 52, 65, 665 |
| AoxI | GGCC | 3 cut(s) | 164, 183, 387 |
| ApoI | RAATTY | 1 cut(s) | 830 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 807 |
| AspLEI | GCGC | 2 cut(s) | 86, 103 |
| AspS9I | GGNCC | 1 cut(s) | 388 |
| AsuHPI | GGTGA | 1 cut(s) | 206 |
| BaeGI | GKGCMC | 1 cut(s) | 343 |
| BamHI | GGATCC | 1 cut(s) | 57 |
| BanI | GGYRCC | 1 cut(s) | 340 |
| BauI | CACGAG | 1 cut(s) | 503 |
| BccI | CCATC | 3 cut(s) | 744, 820, 898 |
| BceAI | ACGGC | 2 cut(s) | 179, 402 |
| BciT130I | CCWGG | 1 cut(s) | 551 |
| BciVI | GTATCC | 1 cut(s) | 438 |
| BclI | TGATCA | 1 cut(s) | 864 |
| BcoDI | GTCTC | 1 cut(s) | 898 |
| BfaI | CTAG | 4 cut(s) | 87, 95, 123, 330 |
| BfoI | RGCGCY | 2 cut(s) | 87, 104 |
| BfrI | CTTAAG | 1 cut(s) | 533 |
| BfuI | GTATCC | 1 cut(s) | 438 |
| BisI | GCNGC | 2 cut(s) | 167, 204 |
| BlsI | GCNGC | 2 cut(s) | 168, 205 |
| Bme1390I | CCNGG | 1 cut(s) | 551 |
| BmgT120I | GGNCC | 1 cut(s) | 388 |
| BmiI | GGNNCC | 2 cut(s) | 59, 342 |
| BmrFI | CCNGG | 1 cut(s) | 551 |
| BmsI | GCATC | 1 cut(s) | 822 |
| Bpu10I | CCTNAGC | 2 cut(s) | 258, 439 |
| BpuEI | CTTGAG | 2 cut(s) | 525, 584 |
| BsaAI | YACGTR | 1 cut(s) | 43 |
| BsaBI | GATNNNNATC | 1 cut(s) | 863 |
| BsaWI | WCCGGW | 1 cut(s) | 140 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 237, 267 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 173, 385, 556 |
| Bse1I | ACTGG | 2 cut(s) | 207, 483 |
| Bse3DI | GCAATG | 1 cut(s) | 906 |
| Bse8I | GATNNNNATC | 1 cut(s) | 863 |
| BseBI | CCWGG | 1 cut(s) | 551 |
| BseGI | GGATG | 2 cut(s) | 375, 450 |
| BseJI | GATNNNNATC | 1 cut(s) | 863 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 173, 385, 556 |
| BseMI | GCAATG | 1 cut(s) | 906 |
| BseNI | ACTGG | 2 cut(s) | 207, 483 |
| BseSI | GKGCMC | 1 cut(s) | 343 |
| BseX3I | CGGCCG | 1 cut(s) | 164 |
| BseYI | CCCAGC | 3 cut(s) | 294, 390, 421 |
| Bsh1236I | CGCG | 1 cut(s) | 107 |
| Bsh1285I | CGRYCG | 1 cut(s) | 167 |
| BshFI | GGCC | 3 cut(s) | 166, 185, 389 |
| BshNI | GGYRCC | 1 cut(s) | 340 |
| BsiEI | CGRYCG | 1 cut(s) | 167 |
| BsiSI | CCGG | 3 cut(s) | 78, 141, 182 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 173, 385, 556 |
| BsmAI | GTCTC | 1 cut(s) | 898 |
| BsmBI | CGTCTC | 1 cut(s) | 898 |
| BsnI | GGCC | 3 cut(s) | 166, 185, 389 |
| Bsp1286I | GDGCHC | 1 cut(s) | 343 |
| Bsp143I | GATC | 4 cut(s) | 57, 224, 670, 864 |
| BspACI | CCGC | 8 cut(s) | 53, 107, 167, 201, 204, 523, 763, 837 |
| BspANI | GGCC | 3 cut(s) | 166, 185, 389 |
| BspFNI | CGCG | 1 cut(s) | 107 |
| BspHI | TCATGA | 3 cut(s) | 514, 618, 718 |
| BspLI | GGNNCC | 2 cut(s) | 59, 342 |
| BspPI | GGATC | 3 cut(s) | 52, 65, 665 |
| BspQI | GCTCTTC | 1 cut(s) | 693 |
| BspT107I | GGYRCC | 1 cut(s) | 340 |
| BspTI | CTTAAG | 1 cut(s) | 533 |
| BsrDI | GCAATG | 1 cut(s) | 906 |
| BsrI | ACTGG | 2 cut(s) | 207, 483 |
| BssMI | GATC | 4 cut(s) | 57, 224, 670, 864 |
| BssSI | CACGAG | 1 cut(s) | 503 |
| Bst2BI | CACGAG | 1 cut(s) | 503 |
| Bst2UI | CCWGG | 1 cut(s) | 551 |
| Bst6I | CTCTTC | 1 cut(s) | 693 |
| BstAFI | CTTAAG | 1 cut(s) | 533 |
| BstBAI | YACGTR | 1 cut(s) | 43 |
| BstC8I | GCNNGC | 3 cut(s) | 105, 353, 411 |
| BstDEI | CTNAG | 3 cut(s) | 170, 258, 439 |
| BstF5I | GGATG | 2 cut(s) | 375, 450 |
| BstFNI | CGCG | 1 cut(s) | 107 |
| BstH2I | RGCGCY | 2 cut(s) | 87, 104 |
| BstHHI | GCGC | 2 cut(s) | 86, 103 |
| BstKTI | GATC | 4 cut(s) | 60, 227, 673, 867 |
| BstMAI | GTCTC | 1 cut(s) | 898 |
| BstMBI | GATC | 4 cut(s) | 57, 224, 670, 864 |
| BstMCI | CGRYCG | 1 cut(s) | 167 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 83, 119, 128, 254, 410, 599 |
| BstNI | CCWGG | 1 cut(s) | 551 |
| BstNSI | RCATGY | 1 cut(s) | 413 |
| BstSCI | CCNGG | 1 cut(s) | 549 |
| BstSLI | GKGCMC | 1 cut(s) | 343 |
| BstSNI | TACGTA | 1 cut(s) | 43 |
| BstUI | CGCG | 1 cut(s) | 107 |
| BstX2I | RGATCY | 2 cut(s) | 57, 670 |
| BstYI | RGATCY | 2 cut(s) | 57, 670 |
| BstZI | CGGCCG | 1 cut(s) | 164 |
| BsuI | GTATCC | 1 cut(s) | 438 |
| BsuRI | GGCC | 3 cut(s) | 166, 185, 389 |
| BtsCI | GGATG | 2 cut(s) | 375, 450 |
| BtsIMutI | CAGTG | 1 cut(s) | 476 |
| Cac8I | GCNNGC | 3 cut(s) | 105, 353, 411 |
| CciI | TCATGA | 3 cut(s) | 514, 618, 718 |
| CfoI | GCGC | 2 cut(s) | 86, 103 |
| Cfr13I | GGNCC | 1 cut(s) | 388 |
| CseI | GACGC | 2 cut(s) | 287, 383 |
| Csp6I | GTAC | 3 cut(s) | 70, 655, 785 |
| CviAII | CATG | 4 cut(s) | 410, 515, 619, 719 |
| CviQI | GTAC | 3 cut(s) | 70, 655, 785 |
| DdeI | CTNAG | 3 cut(s) | 170, 258, 439 |
| DpnI | GATC | 4 cut(s) | 59, 226, 672, 866 |
| DpnII | GATC | 4 cut(s) | 57, 224, 670, 864 |
| EaeI | YGGCCR | 1 cut(s) | 164 |
| EagI | CGGCCG | 1 cut(s) | 164 |
| Eam1104I | CTCTTC | 1 cut(s) | 693 |
| EarI | CTCTTC | 1 cut(s) | 693 |
| EciI | GGCGGA | 2 cut(s) | 190, 512 |
| EclXI | CGGCCG | 1 cut(s) | 164 |
| Eco105I | TACGTA | 1 cut(s) | 43 |
| Eco32I | GATATC | 1 cut(s) | 500 |
| Eco52I | CGGCCG | 1 cut(s) | 164 |
| EcoRI | GAATTC | 1 cut(s) | 830 |
| EcoRII | CCWGG | 1 cut(s) | 549 |
| EcoRV | GATATC | 1 cut(s) | 500 |
| Esp3I | CGTCTC | 1 cut(s) | 898 |
| FaeI | CATG | 4 cut(s) | 413, 518, 622, 722 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 452, 484 |
| FatI | CATG | 4 cut(s) | 409, 514, 618, 718 |
| FauI | CCCGC | 1 cut(s) | 46 |
| FbaI | TGATCA | 1 cut(s) | 864 |
| Fnu4HI | GCNGC | 2 cut(s) | 167, 204 |
| FokI | GGATG | 2 cut(s) | 362, 457 |
| Fsp4HI | GCNGC | 2 cut(s) | 167, 204 |
| FspBI | CTAG | 4 cut(s) | 87, 95, 123, 330 |
| GlaI | GCGC | 2 cut(s) | 85, 102 |
| GluI | GCNGC | 2 cut(s) | 167, 204 |
| GsaI | CCCAGC | 3 cut(s) | 298, 394, 425 |
| HaeII | RGCGCY | 2 cut(s) | 87, 104 |
| HaeIII | GGCC | 3 cut(s) | 166, 185, 389 |
| HapII | CCGG | 3 cut(s) | 78, 141, 182 |
| HgaI | GACGC | 2 cut(s) | 287, 383 |
| HhaI | GCGC | 2 cut(s) | 86, 103 |
| Hin1II | CATG | 4 cut(s) | 413, 518, 622, 722 |
| Hin6I | GCGC | 2 cut(s) | 84, 101 |
| HinP1I | GCGC | 2 cut(s) | 84, 101 |
| HindIII | AAGCTT | 1 cut(s) | 490 |
| HinfI | GANTC | 5 cut(s) | 197, 546, 638, 722, 874 |
| HpaII | CCGG | 3 cut(s) | 78, 141, 182 |
| HphI | GGTGA | 1 cut(s) | 206 |
| Hpy188I | TCNGA | 2 cut(s) | 161, 802 |
| Hpy188III | TCNNGA | 7 cut(s) | 503, 515, 563, 619, 719, 734, 868 |
| HpyAV | CCTTC | 4 cut(s) | 293, 344, 818, 895 |
| HpyCH4IV | ACGT | 2 cut(s) | 42, 714 |
| HpyCH4V | TGCA | 3 cut(s) | 355, 409, 899 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 83, 119, 128, 254, 410, 599 |
| HpyF3I | CTNAG | 3 cut(s) | 170, 258, 439 |
| HpySE526I | ACGT | 2 cut(s) | 42, 714 |
| Hsp92II | CATG | 4 cut(s) | 413, 518, 622, 722 |
| HspAI | GCGC | 2 cut(s) | 84, 101 |
| Ksp22I | TGATCA | 1 cut(s) | 864 |
| Kzo9I | GATC | 4 cut(s) | 57, 224, 670, 864 |
| LguI | GCTCTTC | 1 cut(s) | 693 |
| LmnI | GCTCC | 2 cut(s) | 245, 478 |
| LweI | GCATC | 1 cut(s) | 822 |
| MaeI | CTAG | 4 cut(s) | 87, 95, 123, 330 |
| MaeII | ACGT | 2 cut(s) | 42, 714 |
| MaeIII | GTNAC | 1 cut(s) | 449 |
| MalI | GATC | 4 cut(s) | 59, 226, 672, 866 |
| MboI | GATC | 4 cut(s) | 57, 224, 670, 864 |
| MboII | GAAGA | 2 cut(s) | 680, 710 |
| MflI | RGATCY | 2 cut(s) | 57, 670 |
| MhlI | GDGCHC | 1 cut(s) | 343 |
| MluCI | AATT | 3 cut(s) | 583, 704, 830 |
| MlyI | GAGTC | 3 cut(s) | 632, 716, 868 |
| MmeI | TCCRAC | 1 cut(s) | 444 |
| MroXI | GAANNNNTTC | 1 cut(s) | 807 |
| MseI | TTAA | 1 cut(s) | 534 |
| MslI | CAYNNNNRTG | 2 cut(s) | 346, 617 |
| MspCI | CTTAAG | 1 cut(s) | 533 |
| MspI | CCGG | 3 cut(s) | 78, 141, 182 |
| MspR9I | CCNGG | 1 cut(s) | 551 |
| MvaI | CCWGG | 1 cut(s) | 551 |
| MvnI | CGCG | 1 cut(s) | 107 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 83, 119, 128, 254, 410, 599 |
| NdeII | GATC | 4 cut(s) | 57, 224, 670, 864 |
| NlaIII | CATG | 4 cut(s) | 413, 518, 622, 722 |
| NlaIV | GGNNCC | 2 cut(s) | 59, 342 |
| NspI | RCATGY | 1 cut(s) | 413 |
| PaeI | GCATGC | 1 cut(s) | 413 |
| PagI | TCATGA | 3 cut(s) | 514, 618, 718 |
| PciSI | GCTCTTC | 1 cut(s) | 693 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 233 |
| PdmI | GAANNNNTTC | 1 cut(s) | 807 |
| PfeI | GAWTC | 2 cut(s) | 197, 546 |
| PfoI | TCCNGGA | 1 cut(s) | 549 |
| PkrI | GCNGC | 2 cut(s) | 168, 205 |
| PleI | GAGTC | 3 cut(s) | 632, 716, 868 |
| PpsI | GAGTC | 3 cut(s) | 632, 716, 868 |
| Ppu21I | YACGTR | 1 cut(s) | 43 |
| Psp1406I | AACGTT | 1 cut(s) | 714 |
| Psp6I | CCWGG | 1 cut(s) | 549 |
| PspFI | CCCAGC | 3 cut(s) | 294, 390, 421 |
| PspGI | CCWGG | 1 cut(s) | 549 |
| PspN4I | GGNNCC | 2 cut(s) | 59, 342 |
| PspPI | GGNCC | 1 cut(s) | 388 |
| PsuI | RGATCY | 2 cut(s) | 57, 670 |
| RsaI | GTAC | 3 cut(s) | 71, 656, 786 |
| RsaNI | GTAC | 3 cut(s) | 70, 655, 785 |
| RseI | CAYNNNNRTG | 2 cut(s) | 346, 617 |
| SapI | GCTCTTC | 1 cut(s) | 693 |
| SaqAI | TTAA | 1 cut(s) | 534 |
| SatI | GCNGC | 2 cut(s) | 167, 204 |
| Sau3AI | GATC | 4 cut(s) | 57, 224, 670, 864 |
| Sau96I | GGNCC | 1 cut(s) | 388 |
| SchI | GAGTC | 3 cut(s) | 632, 716, 868 |
| ScrFI | CCNGG | 1 cut(s) | 551 |
| SduI | GDGCHC | 1 cut(s) | 343 |
| SfaNI | GCATC | 1 cut(s) | 822 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 346, 617 |
| SmlI | CTYRAG | 3 cut(s) | 533, 540, 563 |
| SmoI | CTYRAG | 3 cut(s) | 533, 540, 563 |
| SnaBI | TACGTA | 1 cut(s) | 43 |
| SphI | GCATGC | 1 cut(s) | 413 |
| Sse9I | AATT | 3 cut(s) | 583, 704, 830 |
| SsiI | CCGC | 8 cut(s) | 53, 107, 167, 201, 204, 523, 763, 837 |
| SspMI | CTAG | 4 cut(s) | 87, 95, 123, 330 |
| StyD4I | CCNGG | 1 cut(s) | 549 |
| TaiI | ACGT | 2 cut(s) | 45, 717 |
| TaqI | TCGA | 4 cut(s) | 227, 236, 372, 690 |
| TasI | AATT | 3 cut(s) | 583, 704, 830 |
| TatI | WGTACW | 1 cut(s) | 784 |
| TauI | GCSGC | 2 cut(s) | 169, 206 |
| TfiI | GAWTC | 2 cut(s) | 197, 546 |
| Tru1I | TTAA | 1 cut(s) | 534 |
| Tru9I | TTAA | 1 cut(s) | 534 |
| TscAI | CASTG | 1 cut(s) | 483 |
| TspDTI | ATGAA | 4 cut(s) | 14, 503, 647, 707 |
| TspRI | CASTG | 1 cut(s) | 483 |
| Vha464I | CTTAAG | 1 cut(s) | 533 |
| XapI | RAATTY | 1 cut(s) | 830 |
| XceI | RCATGY | 1 cut(s) | 413 |
| XmnI | GAANNNNTTC | 1 cut(s) | 807 |
| XspI | CTAG | 4 cut(s) | 87, 95, 123, 330 |