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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 468 |
| AciI | CCGC | 1 cut(s) | 145 |
| AclI | AACGTT | 1 cut(s) | 96 |
| AcsI | RAATTY | 1 cut(s) | 212 |
| AcyI | GRCGYC | 1 cut(s) | 469 |
| AfaI | GTAC | 2 cut(s) | 38, 168 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 46, 464 |
| AgsI | TTSAA | 2 cut(s) | 123, 160 |
| AjnI | CCWGG | 1 cut(s) | 471 |
| AluBI | AGCT | 3 cut(s) | 64, 346, 368 |
| AluI | AGCT | 3 cut(s) | 64, 346, 368 |
| Alw26I | GTCTC | 1 cut(s) | 455 |
| Ama87I | CYCGRG | 1 cut(s) | 77 |
| ApoI | RAATTY | 1 cut(s) | 212 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspLEI | GCGC | 2 cut(s) | 25, 471 |
| AsuHPI | GGTGA | 1 cut(s) | 445 |
| AvaI | CYCGRG | 1 cut(s) | 77 |
| BanI | GGYRCC | 1 cut(s) | 468 |
| BbsI | GAAGAC | 1 cut(s) | 57 |
| BccI | CCATC | 2 cut(s) | 126, 202 |
| BciT130I | CCWGG | 1 cut(s) | 473 |
| BcoDI | GTCTC | 1 cut(s) | 455 |
| BfaI | CTAG | 1 cut(s) | 408 |
| BfoI | RGCGCY | 1 cut(s) | 472 |
| Bme1390I | CCNGG | 1 cut(s) | 473 |
| BmeT110I | CYCGRG | 1 cut(s) | 77 |
| BmiI | GGNNCC | 2 cut(s) | 355, 470 |
| BmrFI | CCNGG | 1 cut(s) | 473 |
| BmsI | GCATC | 3 cut(s) | 10, 290, 336 |
| BpiI | GAAGAC | 1 cut(s) | 57 |
| BpmI | CTGGAG | 1 cut(s) | 11 |
| Bsa29I | ATCGAT | 2 cut(s) | 284, 309 |
| BsaBI | GATNNNNATC | 1 cut(s) | 245 |
| BsaHI | GRCGYC | 1 cut(s) | 469 |
| BsaJI | CCNNGG | 1 cut(s) | 414 |
| BsaWI | WCCGGW | 1 cut(s) | 320 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 46, 464 |
| Bse8I | GATNNNNATC | 1 cut(s) | 245 |
| BseBI | CCWGG | 1 cut(s) | 473 |
| BseCI | ATCGAT | 2 cut(s) | 284, 309 |
| BseDI | CCNNGG | 1 cut(s) | 414 |
| BseJI | GATNNNNATC | 1 cut(s) | 245 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 46, 464 |
| BshNI | GGYRCC | 1 cut(s) | 468 |
| BshVI | ATCGAT | 2 cut(s) | 284, 309 |
| BsiHKCI | CYCGRG | 1 cut(s) | 77 |
| BsiSI | CCGG | 1 cut(s) | 321 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 46, 464 |
| BsmAI | GTCTC | 1 cut(s) | 455 |
| BsoBI | CYCGRG | 1 cut(s) | 77 |
| Bsp143I | GATC | 2 cut(s) | 246, 306 |
| BspACI | CCGC | 1 cut(s) | 145 |
| BspDI | ATCGAT | 2 cut(s) | 284, 309 |
| BspHI | TCATGA | 1 cut(s) | 340 |
| BspLI | GGNNCC | 2 cut(s) | 355, 470 |
| BspT107I | GGYRCC | 1 cut(s) | 468 |
| BssECI | CCNNGG | 1 cut(s) | 414 |
| BssMI | GATC | 2 cut(s) | 246, 306 |
| BssNI | GRCGYC | 1 cut(s) | 469 |
| Bst2UI | CCWGG | 1 cut(s) | 473 |
| BstACI | GRCGYC | 1 cut(s) | 469 |
| BstDSI | CCRYGG | 1 cut(s) | 414 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 44, 462 |
| BstH2I | RGCGCY | 1 cut(s) | 472 |
| BstHHI | GCGC | 2 cut(s) | 25, 471 |
| BstKTI | GATC | 2 cut(s) | 249, 309 |
| BstMAI | GTCTC | 1 cut(s) | 455 |
| BstMBI | GATC | 2 cut(s) | 246, 306 |
| BstNI | CCWGG | 1 cut(s) | 473 |
| BstSCI | CCNGG | 1 cut(s) | 471 |
| BstV2I | GAAGAC | 1 cut(s) | 57 |
| Bsu15I | ATCGAT | 2 cut(s) | 284, 309 |
| BsuTUI | ATCGAT | 2 cut(s) | 284, 309 |
| BtgI | CCRYGG | 1 cut(s) | 414 |
| BtsIMutI | CAGTG | 1 cut(s) | 231 |
| CciI | TCATGA | 1 cut(s) | 340 |
| CfoI | GCGC | 2 cut(s) | 25, 471 |
| ClaI | ATCGAT | 2 cut(s) | 284, 309 |
| CseI | GACGC | 1 cut(s) | 333 |
| Csp6I | GTAC | 2 cut(s) | 37, 167 |
| CviAII | CATG | 2 cut(s) | 13, 341 |
| CviJI | RGCY | 7 cut(s) | 64, 141, 293, 346, 356, 368, 427 |
| CviKI_1 | RGCY | 7 cut(s) | 64, 141, 293, 346, 356, 368, 427 |
| CviQI | GTAC | 2 cut(s) | 37, 167 |
| DinI | GGCGCC | 1 cut(s) | 470 |
| DpnI | GATC | 2 cut(s) | 248, 308 |
| DpnII | GATC | 2 cut(s) | 246, 306 |
| Eco88I | CYCGRG | 1 cut(s) | 77 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 44, 462 |
| EcoRI | GAATTC | 1 cut(s) | 212 |
| EcoRII | CCWGG | 1 cut(s) | 471 |
| EcoT22I | ATGCAT | 1 cut(s) | 283 |
| EgeI | GGCGCC | 1 cut(s) | 470 |
| EheI | GGCGCC | 1 cut(s) | 470 |
| FaeI | CATG | 2 cut(s) | 16, 344 |
| FaiI | YATR | 9 cut(s) | 14, 67, 138, 239, 279, 342, 359, 386, 402 |
| FatI | CATG | 2 cut(s) | 12, 340 |
| FspBI | CTAG | 1 cut(s) | 408 |
| GlaI | GCGC | 2 cut(s) | 24, 470 |
| GsuI | CTGGAG | 1 cut(s) | 11 |
| HaeII | RGCGCY | 1 cut(s) | 472 |
| HapII | CCGG | 1 cut(s) | 321 |
| HgaI | GACGC | 1 cut(s) | 333 |
| HhaI | GCGC | 2 cut(s) | 25, 471 |
| Hin1I | GRCGYC | 1 cut(s) | 469 |
| Hin1II | CATG | 2 cut(s) | 16, 344 |
| Hin6I | GCGC | 2 cut(s) | 23, 469 |
| HinP1I | GCGC | 2 cut(s) | 23, 469 |
| HinfI | GANTC | 3 cut(s) | 104, 119, 256 |
| HpaII | CCGG | 1 cut(s) | 321 |
| HphI | GGTGA | 1 cut(s) | 445 |
| Hpy188I | TCNGA | 2 cut(s) | 225, 306 |
| Hpy188III | TCNNGA | 5 cut(s) | 28, 101, 116, 341, 408 |
| HpyAV | CCTTC | 1 cut(s) | 277 |
| HpyCH4IV | ACGT | 2 cut(s) | 96, 363 |
| HpyCH4V | TGCA | 1 cut(s) | 281 |
| HpySE526I | ACGT | 2 cut(s) | 96, 363 |
| Hsp92I | GRCGYC | 1 cut(s) | 469 |
| Hsp92II | CATG | 2 cut(s) | 16, 344 |
| HspAI | GCGC | 2 cut(s) | 23, 469 |
| KasI | GGCGCC | 1 cut(s) | 468 |
| Kzo9I | GATC | 2 cut(s) | 246, 306 |
| LmnI | GCTCC | 3 cut(s) | 30, 353, 419 |
| LpnPI | CCDG | 5 cut(s) | 41, 122, 129, 334, 458 |
| LweI | GCATC | 3 cut(s) | 10, 290, 336 |
| MaeI | CTAG | 1 cut(s) | 408 |
| MaeII | ACGT | 2 cut(s) | 96, 363 |
| MaeIII | GTNAC | 1 cut(s) | 101 |
| MalI | GATC | 2 cut(s) | 248, 308 |
| MboI | GATC | 2 cut(s) | 246, 306 |
| MboII | GAAGA | 1 cut(s) | 62 |
| MluCI | AATT | 3 cut(s) | 178, 212, 429 |
| Mly113I | GGCGCC | 1 cut(s) | 469 |
| MlyI | GAGTC | 2 cut(s) | 98, 250 |
| MnlI | CCTC | 4 cut(s) | 40, 50, 152, 458 |
| Mph1103I | ATGCAT | 1 cut(s) | 283 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MslI | CAYNNNNRTG | 3 cut(s) | 15, 236, 389 |
| MspI | CCGG | 1 cut(s) | 321 |
| MspR9I | CCNGG | 1 cut(s) | 473 |
| MvaI | CCWGG | 1 cut(s) | 473 |
| NarI | GGCGCC | 1 cut(s) | 469 |
| NdeII | GATC | 2 cut(s) | 246, 306 |
| NlaIII | CATG | 2 cut(s) | 16, 344 |
| NlaIV | GGNNCC | 2 cut(s) | 355, 470 |
| NmuCI | GTSAC | 1 cut(s) | 101 |
| NsiI | ATGCAT | 1 cut(s) | 283 |
| PaeR7I | CTCGAG | 1 cut(s) | 77 |
| PagI | TCATGA | 1 cut(s) | 340 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PfeI | GAWTC | 1 cut(s) | 119 |
| PleI | GAGTC | 2 cut(s) | 98, 250 |
| PluTI | GGCGCC | 1 cut(s) | 472 |
| PpsI | GAGTC | 2 cut(s) | 98, 250 |
| Psp1406I | AACGTT | 1 cut(s) | 96 |
| Psp6I | CCWGG | 1 cut(s) | 471 |
| PspGI | CCWGG | 1 cut(s) | 471 |
| PspN4I | GGNNCC | 2 cut(s) | 355, 470 |
| PspXI | VCTCGAGB | 1 cut(s) | 77 |
| RsaI | GTAC | 2 cut(s) | 38, 168 |
| RsaNI | GTAC | 2 cut(s) | 37, 167 |
| RseI | CAYNNNNRTG | 3 cut(s) | 15, 236, 389 |
| Sau3AI | GATC | 2 cut(s) | 246, 306 |
| SchI | GAGTC | 2 cut(s) | 98, 250 |
| ScrFI | CCNGG | 1 cut(s) | 473 |
| SetI | ASST | 7 cut(s) | 42, 66, 99, 269, 348, 366, 370 |
| SfaNI | GCATC | 3 cut(s) | 10, 290, 336 |
| SfoI | GGCGCC | 1 cut(s) | 470 |
| Sfr274I | CTCGAG | 1 cut(s) | 77 |
| SlaI | CTCGAG | 1 cut(s) | 77 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 15, 236, 389 |
| SmlI | CTYRAG | 1 cut(s) | 77 |
| SmoI | CTYRAG | 1 cut(s) | 77 |
| Sse9I | AATT | 3 cut(s) | 178, 212, 429 |
| SsiI | CCGC | 1 cut(s) | 145 |
| SspDI | GGCGCC | 1 cut(s) | 468 |
| SspMI | CTAG | 1 cut(s) | 408 |
| StyD4I | CCNGG | 1 cut(s) | 471 |
| TaiI | ACGT | 2 cut(s) | 99, 366 |
| TaqI | TCGA | 4 cut(s) | 78, 249, 284, 309 |
| TasI | AATT | 3 cut(s) | 178, 212, 429 |
| TatI | WGTACW | 1 cut(s) | 166 |
| TfiI | GAWTC | 1 cut(s) | 119 |
| TscAI | CASTG | 1 cut(s) | 238 |
| TseFI | GTSAC | 1 cut(s) | 101 |
| Tsp45I | GTSAC | 1 cut(s) | 101 |
| TspDTI | ATGAA | 2 cut(s) | 29, 329 |
| TspRI | CASTG | 1 cut(s) | 238 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 44, 462 |
| XapI | RAATTY | 1 cut(s) | 212 |
| XbaI | TCTAGA | 1 cut(s) | 407 |
| XhoI | CTCGAG | 1 cut(s) | 77 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 1 cut(s) | 408 |
| Zsp2I | ATGCAT | 1 cut(s) | 283 |