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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 190, 847 |
| AciI | CCGC | 3 cut(s) | 251, 600, 768 |
| AclWI | GGATC | 2 cut(s) | 662, 732 |
| AcoI | YGGCCR | 2 cut(s) | 207, 834 |
| AcsI | RAATTY | 1 cut(s) | 539 |
| AcuI | CTGAAG | 1 cut(s) | 813 |
| AcyI | GRCGYC | 2 cut(s) | 191, 848 |
| AfaI | GTAC | 1 cut(s) | 744 |
| AgsI | TTSAA | 2 cut(s) | 158, 487 |
| AjnI | CCWGG | 3 cut(s) | 112, 291, 315 |
| AluBI | AGCT | 6 cut(s) | 38, 239, 341, 392, 673, 683 |
| AluI | AGCT | 6 cut(s) | 38, 239, 341, 392, 673, 683 |
| Alw26I | GTCTC | 1 cut(s) | 55 |
| AlwI | GGATC | 2 cut(s) | 662, 732 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 41 |
| Ama87I | CYCGRG | 1 cut(s) | 305 |
| AoxI | GGCC | 2 cut(s) | 207, 834 |
| ApeKI | GCWGC | 1 cut(s) | 38 |
| ApoI | RAATTY | 1 cut(s) | 539 |
| AspA2I | CCTAGG | 1 cut(s) | 170 |
| AspLEI | GCGC | 3 cut(s) | 149, 193, 850 |
| AsuHPI | GGTGA | 1 cut(s) | 140 |
| AvaI | CYCGRG | 1 cut(s) | 305 |
| AvrII | CCTAGG | 1 cut(s) | 170 |
| BalI | TGGCCA | 1 cut(s) | 836 |
| BanI | GGYRCC | 2 cut(s) | 190, 847 |
| BbsI | GAAGAC | 1 cut(s) | 587 |
| BbvI | GCAGC | 1 cut(s) | 25 |
| BccI | CCATC | 5 cut(s) | 119, 171, 278, 453, 607 |
| BciT130I | CCWGG | 3 cut(s) | 114, 293, 317 |
| BciVI | GTATCC | 1 cut(s) | 289 |
| BcoDI | GTCTC | 1 cut(s) | 55 |
| BfaI | CTAG | 7 cut(s) | 135, 171, 179, 233, 312, 449, 735 |
| BfmI | CTRYAG | 1 cut(s) | 645 |
| BfoI | RGCGCY | 2 cut(s) | 194, 851 |
| BfuI | GTATCC | 1 cut(s) | 289 |
| BisI | GCNGC | 1 cut(s) | 39 |
| BlnI | CCTAGG | 1 cut(s) | 170 |
| BlsI | GCNGC | 1 cut(s) | 40 |
| Bme1390I | CCNGG | 3 cut(s) | 114, 293, 317 |
| BmeT110I | CYCGRG | 1 cut(s) | 305 |
| BmiI | GGNNCC | 3 cut(s) | 111, 192, 849 |
| BmrFI | CCNGG | 3 cut(s) | 114, 293, 317 |
| BmsI | GCATC | 3 cut(s) | 41, 280, 553 |
| BpiI | GAAGAC | 1 cut(s) | 587 |
| BpmI | CTGGAG | 1 cut(s) | 96 |
| BpuEI | CTTGAG | 3 cut(s) | 183, 260, 327 |
| Bsa29I | ATCGAT | 1 cut(s) | 636 |
| BsaHI | GRCGYC | 2 cut(s) | 191, 848 |
| BsaJI | CCNNGG | 1 cut(s) | 170 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 73, 103, 246, 276 |
| Bse118I | RCCGGY | 1 cut(s) | 205 |
| Bse1I | ACTGG | 3 cut(s) | 145, 189, 272 |
| BseBI | CCWGG | 3 cut(s) | 114, 293, 317 |
| BseCI | ATCGAT | 1 cut(s) | 636 |
| BseDI | CCNNGG | 1 cut(s) | 170 |
| BseGI | GGATG | 4 cut(s) | 130, 166, 396, 711 |
| BseNI | ACTGG | 3 cut(s) | 145, 189, 272 |
| BseX3I | CGGCCG | 1 cut(s) | 207 |
| BseXI | GCAGC | 1 cut(s) | 25 |
| Bsh1285I | CGRYCG | 1 cut(s) | 210 |
| BshFI | GGCC | 2 cut(s) | 209, 836 |
| BshNI | GGYRCC | 2 cut(s) | 190, 847 |
| BshVI | ATCGAT | 1 cut(s) | 636 |
| BsiEI | CGRYCG | 1 cut(s) | 210 |
| BsiHKCI | CYCGRG | 1 cut(s) | 305 |
| BsiSI | CCGG | 2 cut(s) | 206, 210 |
| BsmAI | GTCTC | 1 cut(s) | 55 |
| BsnI | GGCC | 2 cut(s) | 209, 836 |
| BsoBI | CYCGRG | 1 cut(s) | 305 |
| Bsp143I | GATC | 2 cut(s) | 654, 737 |
| BspACI | CCGC | 3 cut(s) | 251, 600, 768 |
| BspANI | GGCC | 2 cut(s) | 209, 836 |
| BspDI | ATCGAT | 1 cut(s) | 636 |
| BspHI | TCATGA | 1 cut(s) | 667 |
| BspLI | GGNNCC | 3 cut(s) | 111, 192, 849 |
| BspPI | GGATC | 2 cut(s) | 662, 732 |
| BspT107I | GGYRCC | 2 cut(s) | 190, 847 |
| BsrFI | RCCGGY | 1 cut(s) | 205 |
| BsrI | ACTGG | 3 cut(s) | 145, 189, 272 |
| BssAI | RCCGGY | 1 cut(s) | 205 |
| BssECI | CCNNGG | 1 cut(s) | 170 |
| BssMI | GATC | 2 cut(s) | 654, 737 |
| BssNI | GRCGYC | 2 cut(s) | 191, 848 |
| BssT1I | CCWWGG | 1 cut(s) | 170 |
| Bst2UI | CCWGG | 3 cut(s) | 114, 293, 317 |
| Bst4CI | ACNGT | 1 cut(s) | 331 |
| Bst6I | CTCTTC | 2 cut(s) | 447, 789 |
| BstACI | GRCGYC | 2 cut(s) | 191, 848 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 38 |
| BstC8I | GCNNGC | 1 cut(s) | 339 |
| BstDEI | CTNAG | 3 cut(s) | 370, 621, 860 |
| BstEII | GGTNACC | 1 cut(s) | 763 |
| BstF5I | GGATG | 4 cut(s) | 130, 166, 396, 711 |
| BstH2I | RGCGCY | 2 cut(s) | 194, 851 |
| BstHHI | GCGC | 3 cut(s) | 149, 193, 850 |
| BstKTI | GATC | 2 cut(s) | 657, 740 |
| BstMAI | GTCTC | 1 cut(s) | 55 |
| BstMBI | GATC | 2 cut(s) | 654, 737 |
| BstMCI | CGRYCG | 1 cut(s) | 210 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 38, 277 |
| BstNI | CCWGG | 3 cut(s) | 114, 293, 317 |
| BstNSI | RCATGY | 1 cut(s) | 325 |
| BstPI | GGTNACC | 1 cut(s) | 763 |
| BstSCI | CCNGG | 3 cut(s) | 112, 291, 315 |
| BstSFI | CTRYAG | 1 cut(s) | 645 |
| BstV1I | GCAGC | 1 cut(s) | 25 |
| BstV2I | GAAGAC | 1 cut(s) | 587 |
| BstX2I | RGATCY | 1 cut(s) | 737 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 844 |
| BstYI | RGATCY | 1 cut(s) | 737 |
| BstZI | CGGCCG | 1 cut(s) | 207 |
| Bsu15I | ATCGAT | 1 cut(s) | 636 |
| BsuI | GTATCC | 1 cut(s) | 289 |
| BsuRI | GGCC | 2 cut(s) | 209, 836 |
| BsuTUI | ATCGAT | 1 cut(s) | 636 |
| BtgZI | GCGATG | 1 cut(s) | 581 |
| BtsCI | GGATG | 4 cut(s) | 130, 166, 396, 711 |
| BtsIMutI | CAGTG | 1 cut(s) | 265 |
| Cac8I | GCNNGC | 1 cut(s) | 339 |
| CaiI | CAGNNNCTG | 1 cut(s) | 41 |
| CciI | TCATGA | 1 cut(s) | 667 |
| CfoI | GCGC | 3 cut(s) | 149, 193, 850 |
| Cfr10I | RCCGGY | 1 cut(s) | 205 |
| ClaI | ATCGAT | 1 cut(s) | 636 |
| Csp6I | GTAC | 1 cut(s) | 743 |
| CviAII | CATG | 5 cut(s) | 322, 668, 704, 805, 838 |
| CviQI | GTAC | 1 cut(s) | 743 |
| DdeI | CTNAG | 3 cut(s) | 370, 621, 860 |
| DinI | GGCGCC | 2 cut(s) | 192, 849 |
| DpnI | GATC | 2 cut(s) | 656, 739 |
| DpnII | GATC | 2 cut(s) | 654, 737 |
| EaeI | YGGCCR | 2 cut(s) | 207, 834 |
| EagI | CGGCCG | 1 cut(s) | 207 |
| Eam1104I | CTCTTC | 2 cut(s) | 447, 789 |
| EarI | CTCTTC | 2 cut(s) | 447, 789 |
| EclXI | CGGCCG | 1 cut(s) | 207 |
| Eco130I | CCWWGG | 1 cut(s) | 170 |
| Eco52I | CGGCCG | 1 cut(s) | 207 |
| Eco57I | CTGAAG | 1 cut(s) | 813 |
| Eco88I | CYCGRG | 1 cut(s) | 305 |
| Eco91I | GGTNACC | 1 cut(s) | 763 |
| EcoO65I | GGTNACC | 1 cut(s) | 763 |
| EcoRI | GAATTC | 1 cut(s) | 539 |
| EcoRII | CCWGG | 3 cut(s) | 112, 291, 315 |
| EcoT14I | CCWWGG | 1 cut(s) | 170 |
| EgeI | GGCGCC | 2 cut(s) | 192, 849 |
| EheI | GGCGCC | 2 cut(s) | 192, 849 |
| ErhI | CCWWGG | 1 cut(s) | 170 |
| FaeI | CATG | 5 cut(s) | 325, 671, 707, 808, 841 |
| FatI | CATG | 5 cut(s) | 321, 667, 703, 804, 837 |
| FauI | CCCGC | 2 cut(s) | 258, 607 |
| Fnu4HI | GCNGC | 1 cut(s) | 39 |
| FokI | GGATG | 4 cut(s) | 137, 153, 383, 698 |
| Fsp4HI | GCNGC | 1 cut(s) | 39 |
| FspBI | CTAG | 7 cut(s) | 135, 171, 179, 233, 312, 449, 735 |
| GlaI | GCGC | 3 cut(s) | 148, 192, 849 |
| GluI | GCNGC | 1 cut(s) | 39 |
| GsuI | CTGGAG | 1 cut(s) | 96 |
| HaeII | RGCGCY | 2 cut(s) | 194, 851 |
| HaeIII | GGCC | 2 cut(s) | 209, 836 |
| HapII | CCGG | 2 cut(s) | 206, 210 |
| HhaI | GCGC | 3 cut(s) | 149, 193, 850 |
| Hin1I | GRCGYC | 2 cut(s) | 191, 848 |
| Hin1II | CATG | 5 cut(s) | 325, 671, 707, 808, 841 |
| Hin6I | GCGC | 3 cut(s) | 147, 191, 848 |
| HinP1I | GCGC | 3 cut(s) | 147, 191, 848 |
| HinfI | GANTC | 9 cut(s) | 19, 131, 175, 288, 301, 353, 406, 431, 583 |
| HpaII | CCGG | 2 cut(s) | 206, 210 |
| HphI | GGTGA | 1 cut(s) | 140 |
| Hpy166II | GTNNAC | 1 cut(s) | 802 |
| Hpy188I | TCNGA | 1 cut(s) | 511 |
| Hpy188III | TCNNGA | 8 cut(s) | 135, 155, 179, 200, 305, 443, 668, 735 |
| Hpy8I | GTNNAC | 1 cut(s) | 802 |
| HpyAV | CCTTC | 1 cut(s) | 604 |
| HpyCH4III | ACNGT | 1 cut(s) | 331 |
| HpyCH4V | TGCA | 1 cut(s) | 522 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 38, 277 |
| HpyF3I | CTNAG | 3 cut(s) | 370, 621, 860 |
| Hsp92I | GRCGYC | 2 cut(s) | 191, 848 |
| Hsp92II | CATG | 5 cut(s) | 325, 671, 707, 808, 841 |
| HspAI | GCGC | 3 cut(s) | 147, 191, 848 |
| KasI | GGCGCC | 2 cut(s) | 190, 847 |
| Kzo9I | GATC | 2 cut(s) | 654, 737 |
| LmnI | GCTCC | 4 cut(s) | 99, 115, 244, 680 |
| Lsp1109I | GCAGC | 1 cut(s) | 25 |
| LweI | GCATC | 3 cut(s) | 41, 280, 553 |
| MaeI | CTAG | 7 cut(s) | 135, 171, 179, 233, 312, 449, 735 |
| MaeIII | GTNAC | 3 cut(s) | 428, 640, 763 |
| MalI | GATC | 2 cut(s) | 656, 739 |
| MboI | GATC | 2 cut(s) | 654, 737 |
| MboII | GAAGA | 4 cut(s) | 464, 592, 733, 806 |
| MflI | RGATCY | 1 cut(s) | 737 |
| MlsI | TGGCCA | 1 cut(s) | 836 |
| MluCI | AATT | 3 cut(s) | 505, 539, 730 |
| MluNI | TGGCCA | 1 cut(s) | 836 |
| Mly113I | GGCGCC | 2 cut(s) | 191, 848 |
| MlyI | GAGTC | 5 cut(s) | 140, 184, 400, 425, 577 |
| MmeI | TCCRAC | 1 cut(s) | 658 |
| Mox20I | TGGCCA | 1 cut(s) | 836 |
| MscI | TGGCCA | 1 cut(s) | 836 |
| MseI | TTAA | 3 cut(s) | 120, 525, 533 |
| MslI | CAYNNNNRTG | 3 cut(s) | 401, 716, 842 |
| Msp20I | TGGCCA | 1 cut(s) | 836 |
| MspA1I | CMGCKG | 1 cut(s) | 38 |
| MspI | CCGG | 2 cut(s) | 206, 210 |
| MspR9I | CCNGG | 3 cut(s) | 114, 293, 317 |
| MvaI | CCWGG | 3 cut(s) | 114, 293, 317 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 38, 277 |
| NarI | GGCGCC | 2 cut(s) | 191, 848 |
| NdeII | GATC | 2 cut(s) | 654, 737 |
| NlaIII | CATG | 5 cut(s) | 325, 671, 707, 808, 841 |
| NlaIV | GGNNCC | 3 cut(s) | 111, 192, 849 |
| NmuCI | GTSAC | 1 cut(s) | 428 |
| NspI | RCATGY | 1 cut(s) | 325 |
| PaeR7I | CTCGAG | 1 cut(s) | 305 |
| PagI | TCATGA | 1 cut(s) | 667 |
| PfeI | GAWTC | 4 cut(s) | 19, 288, 301, 353 |
| PfoI | TCCNGGA | 2 cut(s) | 112, 291 |
| PkrI | GCNGC | 1 cut(s) | 40 |
| PleI | GAGTC | 5 cut(s) | 139, 183, 400, 425, 577 |
| PluTI | GGCGCC | 2 cut(s) | 194, 851 |
| PpsI | GAGTC | 5 cut(s) | 139, 183, 400, 425, 577 |
| Psp6I | CCWGG | 3 cut(s) | 112, 291, 315 |
| PspEI | GGTNACC | 1 cut(s) | 763 |
| PspGI | CCWGG | 3 cut(s) | 112, 291, 315 |
| PspN4I | GGNNCC | 3 cut(s) | 111, 192, 849 |
| PstNI | CAGNNNCTG | 1 cut(s) | 41 |
| PsuI | RGATCY | 1 cut(s) | 737 |
| PvuII | CAGCTG | 1 cut(s) | 38 |
| RsaI | GTAC | 1 cut(s) | 744 |
| RsaNI | GTAC | 1 cut(s) | 743 |
| RseI | CAYNNNNRTG | 3 cut(s) | 401, 716, 842 |
| SaqAI | TTAA | 3 cut(s) | 120, 525, 533 |
| SatI | GCNGC | 1 cut(s) | 39 |
| Sau3AI | GATC | 2 cut(s) | 654, 737 |
| SchI | GAGTC | 5 cut(s) | 140, 184, 400, 425, 577 |
| ScrFI | CCNGG | 3 cut(s) | 114, 293, 317 |
| SfaNI | GCATC | 3 cut(s) | 41, 280, 553 |
| SfcI | CTRYAG | 1 cut(s) | 645 |
| SfoI | GGCGCC | 2 cut(s) | 192, 849 |
| Sfr274I | CTCGAG | 1 cut(s) | 305 |
| SlaI | CTCGAG | 1 cut(s) | 305 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 401, 716, 842 |
| SmlI | CTYRAG | 4 cut(s) | 198, 275, 305, 342 |
| SmoI | CTYRAG | 4 cut(s) | 198, 275, 305, 342 |
| Sse9I | AATT | 3 cut(s) | 505, 539, 730 |
| SsiI | CCGC | 3 cut(s) | 251, 600, 768 |
| SspDI | GGCGCC | 2 cut(s) | 190, 847 |
| SspMI | CTAG | 7 cut(s) | 135, 171, 179, 233, 312, 449, 735 |
| StyD4I | CCNGG | 3 cut(s) | 112, 291, 315 |
| StyI | CCWWGG | 1 cut(s) | 170 |
| TaaI | ACNGT | 1 cut(s) | 331 |
| TaqI | TCGA | 3 cut(s) | 22, 306, 636 |
| TasI | AATT | 3 cut(s) | 505, 539, 730 |
| TfiI | GAWTC | 4 cut(s) | 19, 288, 301, 353 |
| Tru1I | TTAA | 3 cut(s) | 120, 525, 533 |
| Tru9I | TTAA | 3 cut(s) | 120, 525, 533 |
| TscAI | CASTG | 1 cut(s) | 272 |
| TseFI | GTSAC | 1 cut(s) | 428 |
| TseI | GCWGC | 1 cut(s) | 38 |
| Tsp45I | GTSAC | 1 cut(s) | 428 |
| TspDTI | ATGAA | 2 cut(s) | 656, 701 |
| TspGWI | ACGGA | 4 cut(s) | 416, 667, 730, 801 |
| TspRI | CASTG | 1 cut(s) | 272 |
| XapI | RAATTY | 1 cut(s) | 539 |
| XbaI | TCTAGA | 3 cut(s) | 134, 178, 734 |
| XceI | RCATGY | 1 cut(s) | 325 |
| XhoI | CTCGAG | 1 cut(s) | 305 |
| XmaJI | CCTAGG | 1 cut(s) | 170 |
| XspI | CTAG | 7 cut(s) | 135, 171, 179, 233, 312, 449, 735 |