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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 438 |
| AccIII | TCCGGA | 1 cut(s) | 418 |
| AciI | CCGC | 2 cut(s) | 79, 532 |
| AclI | AACGTT | 1 cut(s) | 210 |
| AclWI | GGATC | 1 cut(s) | 320 |
| AcoI | YGGCCR | 1 cut(s) | 127 |
| AcsI | RAATTY | 1 cut(s) | 346 |
| AfaI | GTAC | 1 cut(s) | 502 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 449 |
| AgsI | TTSAA | 1 cut(s) | 427 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 2 cut(s) | 124, 129 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 186, 218 |
| AluBI | AGCT | 1 cut(s) | 48 |
| AluI | AGCT | 1 cut(s) | 48 |
| Alw26I | GTCTC | 2 cut(s) | 190, 388 |
| AlwI | GGATC | 1 cut(s) | 320 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| Aor13HI | TCCGGA | 1 cut(s) | 418 |
| AoxI | GGCC | 2 cut(s) | 93, 127 |
| ApoI | RAATTY | 1 cut(s) | 346 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 303 |
| AspLEI | GCGC | 2 cut(s) | 440, 456 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AxyI | CCTNAGG | 1 cut(s) | 444 |
| BalI | TGGCCA | 1 cut(s) | 129 |
| BbsI | GAAGAC | 1 cut(s) | 171 |
| BccI | CCATC | 3 cut(s) | 90, 92, 240 |
| BciT130I | CCWGG | 2 cut(s) | 126, 131 |
| BcoDI | GTCTC | 2 cut(s) | 190, 388 |
| BfaI | CTAG | 5 cut(s) | 45, 107, 236, 477, 498 |
| BmcAI | AGTACT | 1 cut(s) | 502 |
| Bme1390I | CCNGG | 2 cut(s) | 126, 131 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmrFI | CCNGG | 2 cut(s) | 126, 131 |
| BpiI | GAAGAC | 1 cut(s) | 171 |
| BpuEI | CTTGAG | 1 cut(s) | 74 |
| BsaI | GGTCTC | 2 cut(s) | 190, 388 |
| BsaJI | CCNNGG | 2 cut(s) | 256, 399 |
| BsaWI | WCCGGW | 1 cut(s) | 418 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 449 |
| Bse1I | ACTGG | 1 cut(s) | 24 |
| Bse21I | CCTNAGG | 1 cut(s) | 444 |
| BseAI | TCCGGA | 1 cut(s) | 418 |
| BseBI | CCWGG | 2 cut(s) | 126, 131 |
| BseDI | CCNNGG | 2 cut(s) | 256, 399 |
| BseGI | GGATG | 1 cut(s) | 369 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 449 |
| BseNI | ACTGG | 1 cut(s) | 24 |
| Bsh1236I | CGCG | 1 cut(s) | 438 |
| BshFI | GGCC | 2 cut(s) | 95, 129 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsiSI | CCGG | 1 cut(s) | 419 |
| BslFI | GGGAC | 1 cut(s) | 494 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 449 |
| BsmAI | GTCTC | 2 cut(s) | 190, 388 |
| BsmFI | GGGAC | 1 cut(s) | 494 |
| BsnI | GGCC | 2 cut(s) | 95, 129 |
| Bso31I | GGTCTC | 2 cut(s) | 190, 388 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp13I | TCCGGA | 1 cut(s) | 418 |
| Bsp143I | GATC | 1 cut(s) | 312 |
| BspACI | CCGC | 2 cut(s) | 79, 532 |
| BspANI | GGCC | 2 cut(s) | 95, 129 |
| BspEI | TCCGGA | 1 cut(s) | 418 |
| BspFNI | CGCG | 1 cut(s) | 438 |
| BspHI | TCATGA | 1 cut(s) | 325 |
| BspPI | GGATC | 1 cut(s) | 320 |
| BspTNI | GGTCTC | 2 cut(s) | 190, 388 |
| BsrI | ACTGG | 1 cut(s) | 24 |
| BssECI | CCNNGG | 2 cut(s) | 256, 399 |
| BssMI | GATC | 1 cut(s) | 312 |
| Bst2UI | CCWGG | 2 cut(s) | 126, 131 |
| BstDEI | CTNAG | 1 cut(s) | 444 |
| BstDSI | CCRYGG | 1 cut(s) | 399 |
| BstEII | GGTNACC | 1 cut(s) | 527 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 447 |
| BstF5I | GGATG | 1 cut(s) | 369 |
| BstFNI | CGCG | 1 cut(s) | 438 |
| BstHHI | GCGC | 2 cut(s) | 440, 456 |
| BstKTI | GATC | 1 cut(s) | 315 |
| BstMAI | GTCTC | 2 cut(s) | 190, 388 |
| BstMBI | GATC | 1 cut(s) | 312 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 460 |
| BstNI | CCWGG | 2 cut(s) | 126, 131 |
| BstPI | GGTNACC | 1 cut(s) | 527 |
| BstSCI | CCNGG | 2 cut(s) | 124, 129 |
| BstUI | CGCG | 1 cut(s) | 438 |
| BstV2I | GAAGAC | 1 cut(s) | 171 |
| Bsu36I | CCTNAGG | 1 cut(s) | 444 |
| BsuRI | GGCC | 2 cut(s) | 95, 129 |
| BtgI | CCRYGG | 1 cut(s) | 399 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 1 cut(s) | 369 |
| BtsIMutI | CAGTG | 1 cut(s) | 351 |
| CciI | TCATGA | 1 cut(s) | 325 |
| CfoI | GCGC | 2 cut(s) | 440, 456 |
| Csp6I | GTAC | 1 cut(s) | 501 |
| CviAII | CATG | 2 cut(s) | 326, 362 |
| CviJI | RGCY | 7 cut(s) | 48, 95, 124, 129, 178, 255, 261 |
| CviKI_1 | RGCY | 7 cut(s) | 48, 95, 124, 129, 178, 255, 261 |
| CviQI | GTAC | 1 cut(s) | 501 |
| DdeI | CTNAG | 1 cut(s) | 444 |
| DpnI | GATC | 1 cut(s) | 314 |
| DpnII | GATC | 1 cut(s) | 312 |
| EaeI | YGGCCR | 1 cut(s) | 127 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Eco31I | GGTCTC | 2 cut(s) | 190, 388 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco81I | CCTNAGG | 1 cut(s) | 444 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| Eco91I | GGTNACC | 1 cut(s) | 527 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 447 |
| EcoO65I | GGTNACC | 1 cut(s) | 527 |
| EcoRII | CCWGG | 2 cut(s) | 124, 129 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| FaeI | CATG | 2 cut(s) | 329, 365 |
| FaiI | YATR | 7 cut(s) | 153, 155, 252, 327, 363, 387, 414 |
| FaqI | GGGAC | 1 cut(s) | 494 |
| FatI | CATG | 2 cut(s) | 325, 361 |
| FokI | GGATG | 1 cut(s) | 356 |
| FspBI | CTAG | 5 cut(s) | 45, 107, 236, 477, 498 |
| GlaI | GCGC | 2 cut(s) | 439, 455 |
| HaeIII | GGCC | 2 cut(s) | 95, 129 |
| HapII | CCGG | 1 cut(s) | 419 |
| HhaI | GCGC | 2 cut(s) | 440, 456 |
| Hin1II | CATG | 2 cut(s) | 329, 365 |
| Hin6I | GCGC | 2 cut(s) | 438, 454 |
| HinP1I | GCGC | 2 cut(s) | 438, 454 |
| HinfI | GANTC | 2 cut(s) | 102, 218 |
| HpaII | CCGG | 1 cut(s) | 419 |
| Hpy188III | TCNNGA | 8 cut(s) | 51, 71, 119, 215, 230, 326, 419, 489 |
| Hpy99I | CGWCG | 1 cut(s) | 312 |
| HpyAV | CCTTC | 2 cut(s) | 168, 518 |
| HpyCH4IV | ACGT | 3 cut(s) | 135, 210, 493 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 460 |
| HpyF3I | CTNAG | 1 cut(s) | 444 |
| HpySE526I | ACGT | 3 cut(s) | 135, 210, 493 |
| Hsp92II | CATG | 2 cut(s) | 329, 365 |
| HspAI | GCGC | 2 cut(s) | 438, 454 |
| Kpn2I | TCCGGA | 1 cut(s) | 418 |
| Kzo9I | GATC | 1 cut(s) | 312 |
| MaeI | CTAG | 5 cut(s) | 45, 107, 236, 477, 498 |
| MaeII | ACGT | 3 cut(s) | 135, 210, 493 |
| MaeIII | GTNAC | 3 cut(s) | 5, 215, 527 |
| MalI | GATC | 1 cut(s) | 314 |
| MboI | GATC | 1 cut(s) | 312 |
| MboII | GAAGA | 4 cut(s) | 173, 176, 206, 391 |
| MlsI | TGGCCA | 1 cut(s) | 129 |
| MluCI | AATT | 4 cut(s) | 346, 388, 427, 484 |
| MluNI | TGGCCA | 1 cut(s) | 129 |
| MlyI | GAGTC | 1 cut(s) | 212 |
| MnlI | CCTC | 4 cut(s) | 266, 341, 443, 514 |
| Mox20I | TGGCCA | 1 cut(s) | 129 |
| MroI | TCCGGA | 1 cut(s) | 418 |
| MroXI | GAANNNNTTC | 1 cut(s) | 303 |
| MscI | TGGCCA | 1 cut(s) | 129 |
| MseI | TTAA | 1 cut(s) | 273 |
| MslI | CAYNNNNRTG | 2 cut(s) | 338, 374 |
| Msp20I | TGGCCA | 1 cut(s) | 129 |
| MspI | CCGG | 1 cut(s) | 419 |
| MspR9I | CCNGG | 2 cut(s) | 126, 131 |
| MvaI | CCWGG | 2 cut(s) | 126, 131 |
| MvnI | CGCG | 1 cut(s) | 438 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 460 |
| NdeII | GATC | 1 cut(s) | 312 |
| NlaIII | CATG | 2 cut(s) | 329, 365 |
| NmeAIII | GCCGAG | 1 cut(s) | 237 |
| NmuCI | GTSAC | 1 cut(s) | 215 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 325 |
| PdmI | GAANNNNTTC | 1 cut(s) | 303 |
| PfeI | GAWTC | 1 cut(s) | 102 |
| PleI | GAGTC | 1 cut(s) | 212 |
| PpsI | GAGTC | 1 cut(s) | 212 |
| Psp1406I | AACGTT | 1 cut(s) | 210 |
| Psp6I | CCWGG | 2 cut(s) | 124, 129 |
| PspEI | GGTNACC | 1 cut(s) | 527 |
| PspGI | CCWGG | 2 cut(s) | 124, 129 |
| RsaI | GTAC | 1 cut(s) | 502 |
| RsaNI | GTAC | 1 cut(s) | 501 |
| RseI | CAYNNNNRTG | 2 cut(s) | 338, 374 |
| SaqAI | TTAA | 1 cut(s) | 273 |
| Sau3AI | GATC | 1 cut(s) | 312 |
| ScaI | AGTACT | 1 cut(s) | 502 |
| SchI | GAGTC | 1 cut(s) | 212 |
| ScrFI | CCNGG | 2 cut(s) | 126, 131 |
| SetI | ASST | 8 cut(s) | 12, 50, 138, 213, 323, 333, 496, 529 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 338, 374 |
| SmlI | CTYRAG | 2 cut(s) | 89, 119 |
| SmoI | CTYRAG | 2 cut(s) | 89, 119 |
| Sse9I | AATT | 4 cut(s) | 346, 388, 427, 484 |
| SsiI | CCGC | 2 cut(s) | 79, 532 |
| SspMI | CTAG | 5 cut(s) | 45, 107, 236, 477, 498 |
| StyD4I | CCNGG | 2 cut(s) | 124, 129 |
| TaiI | ACGT | 3 cut(s) | 138, 213, 496 |
| TaqI | TCGA | 3 cut(s) | 120, 192, 307 |
| TasI | AATT | 4 cut(s) | 346, 388, 427, 484 |
| TatI | WGTACW | 1 cut(s) | 500 |
| TfiI | GAWTC | 1 cut(s) | 102 |
| Tru1I | TTAA | 1 cut(s) | 273 |
| Tru9I | TTAA | 1 cut(s) | 273 |
| TscAI | CASTG | 1 cut(s) | 358 |
| TseFI | GTSAC | 1 cut(s) | 215 |
| Tsp45I | GTSAC | 1 cut(s) | 215 |
| TspDTI | ATGAA | 4 cut(s) | 170, 174, 314, 359 |
| TspGWI | ACGGA | 2 cut(s) | 211, 325 |
| TspRI | CASTG | 1 cut(s) | 358 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 447 |
| XapI | RAATTY | 1 cut(s) | 346 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmnI | GAANNNNTTC | 1 cut(s) | 303 |
| XspI | CTAG | 5 cut(s) | 45, 107, 236, 477, 498 |
| ZrmI | AGTACT | 1 cut(s) | 502 |