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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 217 |
| Acc36I | ACCTGC | 2 cut(s) | 141, 217 |
| AccI | GTMKAC | 1 cut(s) | 93 |
| AccII | CGCG | 1 cut(s) | 70 |
| AciI | CCGC | 2 cut(s) | 278, 460 |
| AcoI | YGGCCR | 1 cut(s) | 332 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 116, 330 |
| AgsI | TTSAA | 1 cut(s) | 378 |
| AjnI | CCWGG | 1 cut(s) | 486 |
| AleI | CACNNNNGTG | 1 cut(s) | 77 |
| AluBI | AGCT | 3 cut(s) | 219, 263, 536 |
| AluI | AGCT | 3 cut(s) | 219, 263, 536 |
| Alw26I | GTCTC | 4 cut(s) | 57, 123, 143, 187 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 222, 244, 266 |
| AoxI | GGCC | 2 cut(s) | 118, 332 |
| AspLEI | GCGC | 2 cut(s) | 43, 72 |
| AspS9I | GGNCC | 1 cut(s) | 119 |
| BalI | TGGCCA | 1 cut(s) | 334 |
| BanII | GRGCYC | 3 cut(s) | 111, 165, 233 |
| BauI | CACGAG | 2 cut(s) | 226, 500 |
| BccI | CCATC | 4 cut(s) | 312, 343, 349, 473 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 93, 127, 181, 215, 484, 518 |
| BciT130I | CCWGG | 1 cut(s) | 488 |
| BciVI | GTATCC | 1 cut(s) | 484 |
| BcoDI | GTCTC | 4 cut(s) | 57, 123, 143, 187 |
| BfaI | CTAG | 1 cut(s) | 507 |
| BfmI | CTRYAG | 1 cut(s) | 200 |
| BfuAI | ACCTGC | 2 cut(s) | 141, 217 |
| BfuI | GTATCC | 1 cut(s) | 484 |
| BglII | AGATCT | 1 cut(s) | 20 |
| Bme1390I | CCNGG | 1 cut(s) | 488 |
| BmgT120I | GGNCC | 1 cut(s) | 119 |
| BmiI | GGNNCC | 1 cut(s) | 121 |
| BmrFI | CCNGG | 1 cut(s) | 488 |
| BmsI | GCATC | 2 cut(s) | 19, 475 |
| BoxI | GACNNNNGTC | 2 cut(s) | 99, 155 |
| BpuEI | CTTGAG | 1 cut(s) | 455 |
| BsaI | GGTCTC | 2 cut(s) | 123, 187 |
| BsaWI | WCCGGW | 1 cut(s) | 352 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 116, 330 |
| Bse1I | ACTGG | 1 cut(s) | 405 |
| BseBI | CCWGG | 1 cut(s) | 488 |
| BseGI | GGATG | 1 cut(s) | 387 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 116, 330 |
| BseMII | CTCAG | 1 cut(s) | 8 |
| BseNI | ACTGG | 1 cut(s) | 405 |
| BsgI | GTGCAG | 6 cut(s) | 69, 97, 208, 241, 252, 274 |
| Bsh1236I | CGCG | 1 cut(s) | 70 |
| BshFI | GGCC | 2 cut(s) | 120, 334 |
| BsiSI | CCGG | 2 cut(s) | 317, 353 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 116, 330 |
| BsmAI | GTCTC | 4 cut(s) | 57, 123, 143, 187 |
| BsnI | GGCC | 2 cut(s) | 120, 334 |
| Bso31I | GGTCTC | 2 cut(s) | 123, 187 |
| Bsp1286I | GDGCHC | 3 cut(s) | 111, 165, 233 |
| Bsp143I | GATC | 1 cut(s) | 20 |
| BspACI | CCGC | 2 cut(s) | 278, 460 |
| BspANI | GGCC | 2 cut(s) | 120, 334 |
| BspCNI | CTCAG | 1 cut(s) | 9 |
| BspFNI | CGCG | 1 cut(s) | 70 |
| BspLI | GGNNCC | 1 cut(s) | 121 |
| BspMAI | CTGCAG | 1 cut(s) | 204 |
| BspMI | ACCTGC | 2 cut(s) | 141, 217 |
| BspTNI | GGTCTC | 2 cut(s) | 123, 187 |
| BsrI | ACTGG | 1 cut(s) | 405 |
| BssMI | GATC | 1 cut(s) | 20 |
| BssSI | CACGAG | 2 cut(s) | 226, 500 |
| Bst2BI | CACGAG | 2 cut(s) | 226, 500 |
| Bst2UI | CCWGG | 1 cut(s) | 488 |
| Bst4CI | ACNGT | 1 cut(s) | 526 |
| BstC8I | GCNNGC | 5 cut(s) | 8, 84, 171, 464, 534 |
| BstDEI | CTNAG | 1 cut(s) | 17 |
| BstF5I | GGATG | 1 cut(s) | 387 |
| BstFNI | CGCG | 1 cut(s) | 70 |
| BstHHI | GCGC | 2 cut(s) | 43, 72 |
| BstKTI | GATC | 1 cut(s) | 23 |
| BstMAI | GTCTC | 4 cut(s) | 57, 123, 143, 187 |
| BstMBI | GATC | 1 cut(s) | 20 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 47 |
| BstNI | CCWGG | 1 cut(s) | 488 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 99, 155 |
| BstSCI | CCNGG | 1 cut(s) | 486 |
| BstSFI | CTRYAG | 1 cut(s) | 200 |
| BstUI | CGCG | 1 cut(s) | 70 |
| BstX2I | RGATCY | 1 cut(s) | 20 |
| BstYI | RGATCY | 1 cut(s) | 20 |
| BsuI | GTATCC | 1 cut(s) | 484 |
| BsuRI | GGCC | 2 cut(s) | 120, 334 |
| BtsCI | GGATG | 1 cut(s) | 387 |
| BveI | ACCTGC | 2 cut(s) | 141, 217 |
| Cac8I | GCNNGC | 5 cut(s) | 8, 84, 171, 464, 534 |
| CaiI | CAGNNNCTG | 3 cut(s) | 222, 244, 266 |
| CfoI | GCGC | 2 cut(s) | 43, 72 |
| Cfr13I | GGNCC | 1 cut(s) | 119 |
| DdeI | CTNAG | 1 cut(s) | 17 |
| DpnI | GATC | 1 cut(s) | 22 |
| DpnII | GATC | 1 cut(s) | 20 |
| EaeI | YGGCCR | 1 cut(s) | 332 |
| EciI | GGCGGA | 1 cut(s) | 449 |
| Eco24I | GRGCYC | 3 cut(s) | 111, 165, 233 |
| Eco31I | GGTCTC | 2 cut(s) | 123, 187 |
| Eco32I | GATATC | 1 cut(s) | 437 |
| EcoO109I | RGGNCCY | 1 cut(s) | 119 |
| EcoRII | CCWGG | 1 cut(s) | 486 |
| EcoRV | GATATC | 1 cut(s) | 437 |
| EcoT38I | GRGCYC | 3 cut(s) | 111, 165, 233 |
| FaiI | YATR | 3 cut(s) | 39, 249, 441 |
| FblI | GTMKAC | 1 cut(s) | 93 |
| FokI | GGATG | 1 cut(s) | 394 |
| FriOI | GRGCYC | 3 cut(s) | 111, 165, 233 |
| FspBI | CTAG | 1 cut(s) | 507 |
| GlaI | GCGC | 2 cut(s) | 42, 71 |
| HaeIII | GGCC | 2 cut(s) | 120, 334 |
| HapII | CCGG | 2 cut(s) | 317, 353 |
| HhaI | GCGC | 2 cut(s) | 43, 72 |
| Hin6I | GCGC | 2 cut(s) | 41, 70 |
| HinP1I | GCGC | 2 cut(s) | 41, 70 |
| HincII | GTYRAC | 1 cut(s) | 94 |
| HindII | GTYRAC | 1 cut(s) | 94 |
| HindIII | AAGCTT | 1 cut(s) | 534 |
| HinfI | GANTC | 4 cut(s) | 65, 428, 483, 496 |
| HpaII | CCGG | 2 cut(s) | 317, 353 |
| Hpy166II | GTNNAC | 1 cut(s) | 94 |
| Hpy188III | TCNNGA | 4 cut(s) | 104, 358, 432, 452 |
| Hpy8I | GTNNAC | 1 cut(s) | 94 |
| HpyCH4III | ACNGT | 1 cut(s) | 526 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 47 |
| HpyF3I | CTNAG | 1 cut(s) | 17 |
| HspAI | GCGC | 2 cut(s) | 41, 70 |
| Kzo9I | GATC | 1 cut(s) | 20 |
| LmnI | GCTCC | 3 cut(s) | 224, 268, 415 |
| LweI | GCATC | 2 cut(s) | 19, 475 |
| MaeI | CTAG | 1 cut(s) | 507 |
| MaeIII | GTNAC | 1 cut(s) | 386 |
| MalI | GATC | 1 cut(s) | 22 |
| MboI | GATC | 1 cut(s) | 20 |
| MflI | RGATCY | 1 cut(s) | 20 |
| MhlI | GDGCHC | 3 cut(s) | 111, 165, 233 |
| MlsI | TGGCCA | 1 cut(s) | 334 |
| MluNI | TGGCCA | 1 cut(s) | 334 |
| MlyI | GAGTC | 2 cut(s) | 59, 422 |
| MnlI | CCTC | 2 cut(s) | 285, 324 |
| Mox20I | TGGCCA | 1 cut(s) | 334 |
| MscI | TGGCCA | 1 cut(s) | 334 |
| MseI | TTAA | 1 cut(s) | 538 |
| MslI | CAYNNNNRTG | 1 cut(s) | 77 |
| Msp20I | TGGCCA | 1 cut(s) | 334 |
| MspI | CCGG | 2 cut(s) | 317, 353 |
| MspR9I | CCNGG | 1 cut(s) | 488 |
| MvaI | CCWGG | 1 cut(s) | 488 |
| MvnI | CGCG | 1 cut(s) | 70 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 47 |
| NdeII | GATC | 1 cut(s) | 20 |
| NlaIV | GGNNCC | 1 cut(s) | 121 |
| NmeAIII | GCCGAG | 1 cut(s) | 86 |
| OliI | CACNNNNGTG | 1 cut(s) | 77 |
| PaqCI | CACCTGC | 1 cut(s) | 217 |
| PfeI | GAWTC | 2 cut(s) | 483, 496 |
| PfoI | TCCNGGA | 1 cut(s) | 486 |
| PleI | GAGTC | 2 cut(s) | 59, 422 |
| PpsI | GAGTC | 2 cut(s) | 59, 422 |
| PshAI | GACNNNNGTC | 2 cut(s) | 99, 155 |
| Psp6I | CCWGG | 1 cut(s) | 486 |
| PspGI | CCWGG | 1 cut(s) | 486 |
| PspN4I | GGNNCC | 1 cut(s) | 121 |
| PspPI | GGNCC | 1 cut(s) | 119 |
| PstI | CTGCAG | 1 cut(s) | 204 |
| PstNI | CAGNNNCTG | 3 cut(s) | 222, 244, 266 |
| PsuI | RGATCY | 1 cut(s) | 20 |
| RseI | CAYNNNNRTG | 1 cut(s) | 77 |
| SalI | GTCGAC | 1 cut(s) | 92 |
| SaqAI | TTAA | 1 cut(s) | 538 |
| Sau3AI | GATC | 1 cut(s) | 20 |
| Sau96I | GGNCC | 1 cut(s) | 119 |
| SchI | GAGTC | 2 cut(s) | 59, 422 |
| ScrFI | CCNGG | 1 cut(s) | 488 |
| SduI | GDGCHC | 3 cut(s) | 111, 165, 233 |
| SfaNI | GCATC | 2 cut(s) | 19, 475 |
| SfcI | CTRYAG | 1 cut(s) | 200 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 77 |
| SmlI | CTYRAG | 1 cut(s) | 470 |
| SmoI | CTYRAG | 1 cut(s) | 470 |
| SsiI | CCGC | 2 cut(s) | 278, 460 |
| SspMI | CTAG | 1 cut(s) | 507 |
| StyD4I | CCNGG | 1 cut(s) | 486 |
| TaaI | ACNGT | 1 cut(s) | 526 |
| TaqI | TCGA | 4 cut(s) | 93, 103, 159, 477 |
| TfiI | GAWTC | 2 cut(s) | 483, 496 |
| Tru1I | TTAA | 1 cut(s) | 538 |
| Tru9I | TTAA | 1 cut(s) | 538 |
| XmiI | GTMKAC | 1 cut(s) | 93 |
| XspI | CTAG | 1 cut(s) | 507 |