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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 848 |
| AccII | CGCG | 1 cut(s) | 80 |
| AciI | CCGC | 4 cut(s) | 494, 497, 745, 771 |
| AclWI | GGATC | 2 cut(s) | 367, 380 |
| AcoI | YGGCCR | 3 cut(s) | 99, 119, 208 |
| AcsI | RAATTY | 1 cut(s) | 916 |
| AfaI | GTAC | 2 cut(s) | 222, 769 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 97, 124, 186, 793, 797, 828 |
| AflIII | ACRYGT | 1 cut(s) | 419 |
| AgsI | TTSAA | 3 cut(s) | 760, 884, 896 |
| AjiI | CACGTC | 5 cut(s) | 361, 385, 422, 470, 487 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 672, 704 |
| AluBI | AGCT | 3 cut(s) | 131, 539, 545 |
| AluI | AGCT | 3 cut(s) | 131, 539, 545 |
| Alw26I | GTCTC | 3 cut(s) | 48, 62, 676 |
| AlwI | GGATC | 2 cut(s) | 367, 380 |
| AoxI | GGCC | 8 cut(s) | 48, 99, 119, 208, 300, 348, 507, 905 |
| ApeKI | GCWGC | 2 cut(s) | 145, 427 |
| ApoI | RAATTY | 1 cut(s) | 916 |
| AspA2I | CCTAGG | 1 cut(s) | 791 |
| AspS9I | GGNCC | 8 cut(s) | 14, 49, 301, 349, 396, 433, 457, 832 |
| AsuHPI | GGTGA | 3 cut(s) | 854, 862, 869 |
| AvaII | GGWCC | 5 cut(s) | 14, 396, 433, 457, 832 |
| AvrII | CCTAGG | 1 cut(s) | 791 |
| AxyI | CCTNAGG | 2 cut(s) | 339, 853 |
| BamHI | GGATCC | 1 cut(s) | 372 |
| BanI | GGYRCC | 1 cut(s) | 848 |
| BauI | CACGAG | 2 cut(s) | 29, 632 |
| BbsI | GAAGAC | 1 cut(s) | 657 |
| BbvI | GCAGC | 2 cut(s) | 157, 439 |
| BccI | CCATC | 4 cut(s) | 599, 726, 839, 843 |
| BceAI | ACGGC | 2 cut(s) | 25, 239 |
| BcoDI | GTCTC | 3 cut(s) | 48, 62, 676 |
| BfaI | CTAG | 2 cut(s) | 722, 792 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 572 |
| BisI | GCNGC | 3 cut(s) | 146, 428, 497 |
| BlnI | CCTAGG | 1 cut(s) | 791 |
| BlpI | GCTNAGC | 1 cut(s) | 277 |
| BlsI | GCNGC | 3 cut(s) | 147, 429, 498 |
| Bme18I | GGWCC | 5 cut(s) | 14, 396, 433, 457, 832 |
| BmgBI | CACGTC | 5 cut(s) | 361, 385, 422, 470, 487 |
| BmgT120I | GGNCC | 8 cut(s) | 14, 49, 301, 349, 396, 433, 457, 832 |
| BmiI | GGNNCC | 7 cut(s) | 164, 374, 397, 398, 435, 833, 850 |
| BmrI | ACTGGG | 1 cut(s) | 46 |
| BmsI | GCATC | 3 cut(s) | 484, 508, 850 |
| BmuI | ACTGGG | 1 cut(s) | 46 |
| BpiI | GAAGAC | 1 cut(s) | 657 |
| BpmI | CTGGAG | 1 cut(s) | 611 |
| Bpu10I | CCTNAGC | 1 cut(s) | 902 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 277 |
| BpuEI | CTTGAG | 2 cut(s) | 488, 525 |
| BsaI | GGTCTC | 1 cut(s) | 676 |
| BsaJI | CCNNGG | 2 cut(s) | 791, 822 |
| BsaWI | WCCGGW | 2 cut(s) | 124, 165 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 97, 124, 186, 793, 797, 828 |
| Bse118I | RCCGGY | 3 cut(s) | 97, 117, 206 |
| Bse1I | ACTGG | 1 cut(s) | 52 |
| Bse21I | CCTNAGG | 2 cut(s) | 339, 853 |
| BseDI | CCNNGG | 2 cut(s) | 791, 822 |
| BseGI | GGATG | 2 cut(s) | 594, 622 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 97, 124, 186, 793, 797, 828 |
| BseMII | CTCAG | 4 cut(s) | 59, 291, 867, 916 |
| BseNI | ACTGG | 1 cut(s) | 52 |
| BseX3I | CGGCCG | 1 cut(s) | 208 |
| BseXI | GCAGC | 2 cut(s) | 157, 439 |
| Bsh1236I | CGCG | 1 cut(s) | 80 |
| Bsh1285I | CGRYCG | 1 cut(s) | 211 |
| BshFI | GGCC | 8 cut(s) | 50, 101, 121, 210, 302, 350, 509, 907 |
| BshNI | GGYRCC | 1 cut(s) | 848 |
| BsiEI | CGRYCG | 1 cut(s) | 211 |
| BsiSI | CCGG | 6 cut(s) | 12, 98, 118, 125, 166, 207 |
| BslFI | GGGAC | 3 cut(s) | 409, 791, 950 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 97, 124, 186, 793, 797, 828 |
| BsmAI | GTCTC | 3 cut(s) | 48, 62, 676 |
| BsmBI | CGTCTC | 1 cut(s) | 48 |
| BsmFI | GGGAC | 3 cut(s) | 409, 791, 950 |
| BsnI | GGCC | 8 cut(s) | 50, 101, 121, 210, 302, 350, 509, 907 |
| Bso31I | GGTCTC | 1 cut(s) | 676 |
| Bsp143I | GATC | 1 cut(s) | 372 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 277 |
| Bsp19I | CCATGG | 1 cut(s) | 822 |
| BspACI | CCGC | 4 cut(s) | 494, 497, 745, 771 |
| BspANI | GGCC | 8 cut(s) | 50, 101, 121, 210, 302, 350, 509, 907 |
| BspCNI | CTCAG | 4 cut(s) | 58, 290, 866, 915 |
| BspFNI | CGCG | 1 cut(s) | 80 |
| BspLI | GGNNCC | 7 cut(s) | 164, 374, 397, 398, 435, 833, 850 |
| BspPI | GGATC | 2 cut(s) | 367, 380 |
| BspT107I | GGYRCC | 1 cut(s) | 848 |
| BspTNI | GGTCTC | 1 cut(s) | 676 |
| BsrFI | RCCGGY | 3 cut(s) | 97, 117, 206 |
| BsrI | ACTGG | 1 cut(s) | 52 |
| BssAI | RCCGGY | 3 cut(s) | 97, 117, 206 |
| BssECI | CCNNGG | 2 cut(s) | 791, 822 |
| BssMI | GATC | 1 cut(s) | 372 |
| BssSI | CACGAG | 2 cut(s) | 29, 632 |
| BssT1I | CCWWGG | 2 cut(s) | 791, 822 |
| Bst2BI | CACGAG | 2 cut(s) | 29, 632 |
| Bst4CI | ACNGT | 1 cut(s) | 805 |
| BstC8I | GCNNGC | 3 cut(s) | 494, 537, 799 |
| BstDEI | CTNAG | 8 cut(s) | 45, 277, 312, 339, 568, 853, 902, 969 |
| BstDSI | CCRYGG | 1 cut(s) | 822 |
| BstF5I | GGATG | 2 cut(s) | 594, 622 |
| BstFNI | CGCG | 1 cut(s) | 80 |
| BstKTI | GATC | 1 cut(s) | 375 |
| BstMAI | GTCTC | 3 cut(s) | 48, 62, 676 |
| BstMBI | GATC | 1 cut(s) | 372 |
| BstMCI | CGRYCG | 1 cut(s) | 211 |
| BstUI | CGCG | 1 cut(s) | 80 |
| BstV1I | GCAGC | 2 cut(s) | 157, 439 |
| BstV2I | GAAGAC | 1 cut(s) | 657 |
| BstX2I | RGATCY | 1 cut(s) | 372 |
| BstYI | RGATCY | 1 cut(s) | 372 |
| BstZI | CGGCCG | 1 cut(s) | 208 |
| Bsu36I | CCTNAGG | 2 cut(s) | 339, 853 |
| BsuRI | GGCC | 8 cut(s) | 50, 101, 121, 210, 302, 350, 509, 907 |
| BtgI | CCRYGG | 1 cut(s) | 822 |
| BtrI | CACGTC | 5 cut(s) | 361, 385, 422, 470, 487 |
| BtsCI | GGATG | 2 cut(s) | 594, 622 |
| BtsI | GCAGTG | 2 cut(s) | 400, 437 |
| BtsIMutI | CAGTG | 4 cut(s) | 59, 400, 437, 485 |
| Cac8I | GCNNGC | 3 cut(s) | 494, 537, 799 |
| Cfr10I | RCCGGY | 3 cut(s) | 97, 117, 206 |
| Cfr13I | GGNCC | 8 cut(s) | 14, 49, 301, 349, 396, 433, 457, 832 |
| Csp6I | GTAC | 2 cut(s) | 221, 768 |
| CviAII | CATG | 3 cut(s) | 815, 823, 839 |
| CviQI | GTAC | 2 cut(s) | 221, 768 |
| DdeI | CTNAG | 8 cut(s) | 45, 277, 312, 339, 568, 853, 902, 969 |
| DpnI | GATC | 1 cut(s) | 374 |
| DpnII | GATC | 1 cut(s) | 372 |
| EaeI | YGGCCR | 3 cut(s) | 99, 119, 208 |
| EagI | CGGCCG | 1 cut(s) | 208 |
| EclXI | CGGCCG | 1 cut(s) | 208 |
| Eco130I | CCWWGG | 2 cut(s) | 791, 822 |
| Eco147I | AGGCCT | 1 cut(s) | 907 |
| Eco31I | GGTCTC | 1 cut(s) | 676 |
| Eco47I | GGWCC | 5 cut(s) | 14, 396, 433, 457, 832 |
| Eco52I | CGGCCG | 1 cut(s) | 208 |
| Eco81I | CCTNAGG | 2 cut(s) | 339, 853 |
| EcoO109I | RGGNCCY | 3 cut(s) | 396, 433, 457 |
| EcoT14I | CCWWGG | 2 cut(s) | 791, 822 |
| ErhI | CCWWGG | 2 cut(s) | 791, 822 |
| Esp3I | CGTCTC | 1 cut(s) | 48 |
| FaeI | CATG | 3 cut(s) | 818, 826, 842 |
| FaqI | GGGAC | 3 cut(s) | 409, 791, 950 |
| FatI | CATG | 3 cut(s) | 814, 822, 838 |
| FauI | CCCGC | 1 cut(s) | 501 |
| FauNDI | CATATG | 1 cut(s) | 612 |
| Fnu4HI | GCNGC | 3 cut(s) | 146, 428, 497 |
| FokI | GGATG | 2 cut(s) | 581, 629 |
| Fsp4HI | GCNGC | 3 cut(s) | 146, 428, 497 |
| FspBI | CTAG | 2 cut(s) | 722, 792 |
| GluI | GCNGC | 3 cut(s) | 146, 428, 497 |
| GsuI | CTGGAG | 1 cut(s) | 611 |
| HaeIII | GGCC | 8 cut(s) | 50, 101, 121, 210, 302, 350, 509, 907 |
| HapII | CCGG | 6 cut(s) | 12, 98, 118, 125, 166, 207 |
| Hin1II | CATG | 3 cut(s) | 818, 826, 842 |
| HindIII | AAGCTT | 1 cut(s) | 543 |
| HinfI | GANTC | 6 cut(s) | 34, 67, 516, 604, 620, 704 |
| HpaII | CCGG | 6 cut(s) | 12, 98, 118, 125, 166, 207 |
| HphI | GGTGA | 3 cut(s) | 854, 862, 869 |
| Hpy166II | GTNNAC | 1 cut(s) | 781 |
| Hpy188I | TCNGA | 1 cut(s) | 8 |
| Hpy188III | TCNNGA | 4 cut(s) | 31, 71, 367, 716 |
| Hpy8I | GTNNAC | 1 cut(s) | 781 |
| HpyAV | CCTTC | 4 cut(s) | 266, 448, 530, 654 |
| HpyCH4III | ACNGT | 1 cut(s) | 805 |
| HpyCH4IV | ACGT | 5 cut(s) | 360, 384, 421, 469, 486 |
| HpyCH4V | TGCA | 1 cut(s) | 201 |
| HpyF3I | CTNAG | 8 cut(s) | 45, 277, 312, 339, 568, 853, 902, 969 |
| HpySE526I | ACGT | 5 cut(s) | 360, 384, 421, 469, 486 |
| Hsp92II | CATG | 3 cut(s) | 818, 826, 842 |
| KflI | GGGWCCC | 1 cut(s) | 396 |
| Kzo9I | GATC | 1 cut(s) | 372 |
| LmnI | GCTCC | 2 cut(s) | 136, 630 |
| Lsp1109I | GCAGC | 2 cut(s) | 157, 439 |
| LweI | GCATC | 3 cut(s) | 484, 508, 850 |
| MaeI | CTAG | 2 cut(s) | 722, 792 |
| MaeII | ACGT | 5 cut(s) | 360, 384, 421, 469, 486 |
| MalI | GATC | 1 cut(s) | 374 |
| MboI | GATC | 1 cut(s) | 372 |
| MboII | GAAGA | 6 cut(s) | 262, 265, 276, 298, 659, 662 |
| MflI | RGATCY | 1 cut(s) | 372 |
| MluCI | AATT | 2 cut(s) | 874, 916 |
| MlyI | GAGTC | 3 cut(s) | 43, 76, 598 |
| MnlI | CCTC | 8 cut(s) | 18, 340, 363, 565, 752, 784, 862, 951 |
| MseI | TTAA | 1 cut(s) | 216 |
| MslI | CAYNNNNRTG | 4 cut(s) | 599, 615, 840, 843 |
| MspI | CCGG | 6 cut(s) | 12, 98, 118, 125, 166, 207 |
| MvnI | CGCG | 1 cut(s) | 80 |
| NcoI | CCATGG | 1 cut(s) | 822 |
| NdeI | CATATG | 1 cut(s) | 612 |
| NdeII | GATC | 1 cut(s) | 372 |
| NlaIII | CATG | 3 cut(s) | 818, 826, 842 |
| NlaIV | GGNNCC | 7 cut(s) | 164, 374, 397, 398, 435, 833, 850 |
| PceI | AGGCCT | 1 cut(s) | 907 |
| PfeI | GAWTC | 3 cut(s) | 516, 620, 704 |
| PkrI | GCNGC | 3 cut(s) | 147, 429, 498 |
| PleI | GAGTC | 3 cut(s) | 42, 75, 598 |
| PpsI | GAGTC | 3 cut(s) | 42, 75, 598 |
| PpuMI | RGGWCCY | 3 cut(s) | 396, 433, 457 |
| Psp5II | RGGWCCY | 3 cut(s) | 396, 433, 457 |
| PspN4I | GGNNCC | 7 cut(s) | 164, 374, 397, 398, 435, 833, 850 |
| PspPI | GGNCC | 8 cut(s) | 14, 49, 301, 349, 396, 433, 457, 832 |
| PspPPI | RGGWCCY | 3 cut(s) | 396, 433, 457 |
| PsuI | RGATCY | 1 cut(s) | 372 |
| RsaI | GTAC | 2 cut(s) | 222, 769 |
| RsaNI | GTAC | 2 cut(s) | 221, 768 |
| RseI | CAYNNNNRTG | 4 cut(s) | 599, 615, 840, 843 |
| SaqAI | TTAA | 1 cut(s) | 216 |
| SatI | GCNGC | 3 cut(s) | 146, 428, 497 |
| Sau3AI | GATC | 1 cut(s) | 372 |
| Sau96I | GGNCC | 8 cut(s) | 14, 49, 301, 349, 396, 433, 457, 832 |
| SchI | GAGTC | 3 cut(s) | 43, 76, 598 |
| SfaNI | GCATC | 3 cut(s) | 484, 508, 850 |
| SinI | GGWCC | 5 cut(s) | 14, 396, 433, 457, 832 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 599, 615, 840, 843 |
| SmlI | CTYRAG | 2 cut(s) | 503, 540 |
| SmoI | CTYRAG | 2 cut(s) | 503, 540 |
| Sse9I | AATT | 2 cut(s) | 874, 916 |
| SseBI | AGGCCT | 1 cut(s) | 907 |
| SsiI | CCGC | 4 cut(s) | 494, 497, 745, 771 |
| SspI | AATATT | 1 cut(s) | 153 |
| SspMI | CTAG | 2 cut(s) | 722, 792 |
| StuI | AGGCCT | 1 cut(s) | 907 |
| StyI | CCWWGG | 2 cut(s) | 791, 822 |
| TaaI | ACNGT | 1 cut(s) | 805 |
| TaiI | ACGT | 5 cut(s) | 363, 387, 424, 472, 489 |
| TaqI | TCGA | 1 cut(s) | 678 |
| TasI | AATT | 2 cut(s) | 874, 916 |
| TauI | GCSGC | 1 cut(s) | 499 |
| TfiI | GAWTC | 3 cut(s) | 516, 620, 704 |
| Tru1I | TTAA | 1 cut(s) | 216 |
| Tru9I | TTAA | 1 cut(s) | 216 |
| TscAI | CASTG | 4 cut(s) | 59, 407, 444, 485 |
| TseI | GCWGC | 2 cut(s) | 145, 427 |
| TspDTI | ATGAA | 4 cut(s) | 400, 512, 656, 660 |
| TspGWI | ACGGA | 2 cut(s) | 689, 766 |
| TspRI | CASTG | 4 cut(s) | 59, 407, 444, 485 |
| VpaK11BI | GGWCC | 5 cut(s) | 14, 396, 433, 457, 832 |
| XapI | RAATTY | 1 cut(s) | 916 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 59, 794, 842 |
| XmaJI | CCTAGG | 1 cut(s) | 791 |
| XspI | CTAG | 2 cut(s) | 722, 792 |