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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 441, 459 |
| AclWI | GGATC | 1 cut(s) | 323 |
| AcsI | RAATTY | 1 cut(s) | 200 |
| AcyI | GRCGYC | 1 cut(s) | 582 |
| AfaI | GTAC | 1 cut(s) | 20 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 452, 594 |
| AgsI | TTSAA | 2 cut(s) | 148, 619 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 56 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 60, 92 |
| AleI | CACNNNNGTG | 1 cut(s) | 138 |
| AluBI | AGCT | 4 cut(s) | 334, 344, 415, 623 |
| AluI | AGCT | 4 cut(s) | 334, 344, 415, 623 |
| Alw26I | GTCTC | 1 cut(s) | 64 |
| AlwI | GGATC | 1 cut(s) | 323 |
| ApoI | RAATTY | 1 cut(s) | 200 |
| AspLEI | GCGC | 2 cut(s) | 443, 459 |
| AsuHPI | GGTGA | 1 cut(s) | 577 |
| BbsI | GAAGAC | 3 cut(s) | 45, 55, 248 |
| BccI | CCATC | 5 cut(s) | 114, 268, 269, 306, 609 |
| BciVI | GTATCC | 1 cut(s) | 478 |
| BcoDI | GTCTC | 1 cut(s) | 64 |
| BfaI | CTAG | 3 cut(s) | 45, 110, 594 |
| BfuI | GTATCC | 1 cut(s) | 478 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 56 |
| BmiI | GGNNCC | 1 cut(s) | 599 |
| BpiI | GAAGAC | 3 cut(s) | 45, 55, 248 |
| BsaHI | GRCGYC | 1 cut(s) | 582 |
| BsaI | GGTCTC | 1 cut(s) | 64 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 629 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 452, 594 |
| Bse1I | ACTGG | 1 cut(s) | 16 |
| Bse3DI | GCAATG | 1 cut(s) | 565 |
| BseGI | GGATG | 3 cut(s) | 10, 317, 372 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 452, 594 |
| BseMI | GCAATG | 1 cut(s) | 565 |
| BseMII | CTCAG | 1 cut(s) | 633 |
| BseNI | ACTGG | 1 cut(s) | 16 |
| BseRI | GAGGAG | 1 cut(s) | 615 |
| Bsh1236I | CGCG | 2 cut(s) | 441, 459 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 452, 594 |
| BsmAI | GTCTC | 1 cut(s) | 64 |
| Bso31I | GGTCTC | 1 cut(s) | 64 |
| Bsp143I | GATC | 2 cut(s) | 216, 315 |
| BspCNI | CTCAG | 1 cut(s) | 634 |
| BspFNI | CGCG | 2 cut(s) | 441, 459 |
| BspHI | TCATGA | 1 cut(s) | 328 |
| BspLI | GGNNCC | 1 cut(s) | 599 |
| BspPI | GGATC | 1 cut(s) | 323 |
| BspQI | GCTCTTC | 1 cut(s) | 456 |
| BspTNI | GGTCTC | 1 cut(s) | 64 |
| BsrDI | GCAATG | 1 cut(s) | 565 |
| BsrI | ACTGG | 1 cut(s) | 16 |
| BssMI | GATC | 2 cut(s) | 216, 315 |
| BssNI | GRCGYC | 1 cut(s) | 582 |
| Bst4CI | ACNGT | 1 cut(s) | 54 |
| Bst6I | CTCTTC | 2 cut(s) | 456, 523 |
| BstACI | GRCGYC | 1 cut(s) | 582 |
| BstDEI | CTNAG | 3 cut(s) | 282, 479, 642 |
| BstEII | GGTNACC | 1 cut(s) | 497 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 450 |
| BstF5I | GGATG | 3 cut(s) | 10, 317, 372 |
| BstFNI | CGCG | 2 cut(s) | 441, 459 |
| BstHHI | GCGC | 2 cut(s) | 443, 459 |
| BstKTI | GATC | 2 cut(s) | 219, 318 |
| BstMAI | GTCTC | 1 cut(s) | 64 |
| BstMBI | GATC | 2 cut(s) | 216, 315 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 463, 620 |
| BstPI | GGTNACC | 1 cut(s) | 497 |
| BstUI | CGCG | 2 cut(s) | 441, 459 |
| BstV2I | GAAGAC | 3 cut(s) | 45, 55, 248 |
| BsuI | GTATCC | 1 cut(s) | 478 |
| BtgZI | GCGATG | 1 cut(s) | 242 |
| BtsCI | GGATG | 3 cut(s) | 10, 317, 372 |
| CciI | TCATGA | 1 cut(s) | 328 |
| CfoI | GCGC | 2 cut(s) | 443, 459 |
| CseI | GACGC | 2 cut(s) | 571, 620 |
| Csp6I | GTAC | 1 cut(s) | 19 |
| CviAII | CATG | 3 cut(s) | 89, 329, 365 |
| CviJI | RGCY | 7 cut(s) | 129, 334, 344, 415, 570, 600, 623 |
| CviKI_1 | RGCY | 7 cut(s) | 129, 334, 344, 415, 570, 600, 623 |
| CviQI | GTAC | 1 cut(s) | 19 |
| DdeI | CTNAG | 3 cut(s) | 282, 479, 642 |
| DpnI | GATC | 2 cut(s) | 218, 317 |
| DpnII | GATC | 2 cut(s) | 216, 315 |
| DriI | GACNNNNNGTC | 1 cut(s) | 56 |
| Eam1104I | CTCTTC | 2 cut(s) | 456, 523 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 56 |
| EarI | CTCTTC | 2 cut(s) | 456, 523 |
| Eco31I | GGTCTC | 1 cut(s) | 64 |
| Eco91I | GGTNACC | 1 cut(s) | 497 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 450 |
| EcoO65I | GGTNACC | 1 cut(s) | 497 |
| EcoRI | GAATTC | 1 cut(s) | 200 |
| FaeI | CATG | 3 cut(s) | 92, 332, 368 |
| FatI | CATG | 3 cut(s) | 88, 328, 364 |
| FokI | GGATG | 3 cut(s) | 17, 324, 359 |
| FspBI | CTAG | 3 cut(s) | 45, 110, 594 |
| GlaI | GCGC | 2 cut(s) | 442, 458 |
| HgaI | GACGC | 2 cut(s) | 571, 620 |
| HhaI | GCGC | 2 cut(s) | 443, 459 |
| Hin1I | GRCGYC | 1 cut(s) | 582 |
| Hin1II | CATG | 3 cut(s) | 92, 332, 368 |
| Hin6I | GCGC | 2 cut(s) | 441, 457 |
| HinP1I | GCGC | 2 cut(s) | 441, 457 |
| HincII | GTYRAC | 1 cut(s) | 536 |
| HindII | GTYRAC | 1 cut(s) | 536 |
| HinfI | GANTC | 6 cut(s) | 8, 92, 244, 294, 399, 638 |
| HphI | GGTGA | 1 cut(s) | 577 |
| Hpy166II | GTNNAC | 1 cut(s) | 536 |
| Hpy188I | TCNGA | 2 cut(s) | 423, 643 |
| Hpy188III | TCNNGA | 3 cut(s) | 104, 158, 329 |
| Hpy8I | GTNNAC | 1 cut(s) | 536 |
| HpyAV | CCTTC | 2 cut(s) | 265, 488 |
| HpyCH4III | ACNGT | 1 cut(s) | 54 |
| HpyCH4IV | ACGT | 2 cut(s) | 84, 538 |
| HpyCH4V | TGCA | 2 cut(s) | 269, 308 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 463, 620 |
| HpyF3I | CTNAG | 3 cut(s) | 282, 479, 642 |
| HpySE526I | ACGT | 2 cut(s) | 84, 538 |
| Hsp92I | GRCGYC | 1 cut(s) | 582 |
| Hsp92II | CATG | 3 cut(s) | 92, 332, 368 |
| HspAI | GCGC | 2 cut(s) | 441, 457 |
| Kzo9I | GATC | 2 cut(s) | 216, 315 |
| LguI | GCTCTTC | 1 cut(s) | 456 |
| LmnI | GCTCC | 4 cut(s) | 18, 341, 597, 628 |
| LpnPI | CCDG | 5 cut(s) | 29, 110, 117, 294, 552 |
| MaeI | CTAG | 3 cut(s) | 45, 110, 594 |
| MaeII | ACGT | 2 cut(s) | 84, 538 |
| MaeIII | GTNAC | 3 cut(s) | 352, 497, 583 |
| MalI | GATC | 2 cut(s) | 218, 317 |
| MboI | GATC | 2 cut(s) | 216, 315 |
| MboII | GAAGA | 8 cut(s) | 47, 50, 60, 80, 253, 394, 473, 540 |
| MluCI | AATT | 3 cut(s) | 200, 391, 430 |
| MlyI | GAGTC | 3 cut(s) | 86, 238, 647 |
| MnlI | CCTC | 7 cut(s) | 140, 446, 524, 544, 548, 574, 636 |
| MseI | TTAA | 2 cut(s) | 186, 194 |
| MslI | CAYNNNNRTG | 3 cut(s) | 138, 377, 606 |
| MvnI | CGCG | 2 cut(s) | 441, 459 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 463, 620 |
| NdeII | GATC | 2 cut(s) | 216, 315 |
| NlaIII | CATG | 3 cut(s) | 92, 332, 368 |
| NlaIV | GGNNCC | 1 cut(s) | 599 |
| NmuCI | GTSAC | 2 cut(s) | 352, 583 |
| OliI | CACNNNNGTG | 1 cut(s) | 138 |
| PagI | TCATGA | 1 cut(s) | 328 |
| PciSI | GCTCTTC | 1 cut(s) | 456 |
| PfeI | GAWTC | 3 cut(s) | 8, 294, 399 |
| PleI | GAGTC | 3 cut(s) | 86, 238, 646 |
| PpsI | GAGTC | 3 cut(s) | 86, 238, 646 |
| PspEI | GGTNACC | 1 cut(s) | 497 |
| PspN4I | GGNNCC | 1 cut(s) | 599 |
| RsaI | GTAC | 1 cut(s) | 20 |
| RsaNI | GTAC | 1 cut(s) | 19 |
| RseI | CAYNNNNRTG | 3 cut(s) | 138, 377, 606 |
| SapI | GCTCTTC | 1 cut(s) | 456 |
| SaqAI | TTAA | 2 cut(s) | 186, 194 |
| Sau3AI | GATC | 2 cut(s) | 216, 315 |
| SchI | GAGTC | 3 cut(s) | 86, 238, 647 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 138, 377, 606 |
| Sse9I | AATT | 3 cut(s) | 200, 391, 430 |
| SspMI | CTAG | 3 cut(s) | 45, 110, 594 |
| TaaI | ACNGT | 1 cut(s) | 54 |
| TaiI | ACGT | 2 cut(s) | 87, 541 |
| TaqI | TCGA | 3 cut(s) | 66, 170, 292 |
| TasI | AATT | 3 cut(s) | 200, 391, 430 |
| TfiI | GAWTC | 3 cut(s) | 8, 294, 399 |
| Tru1I | TTAA | 2 cut(s) | 186, 194 |
| Tru9I | TTAA | 2 cut(s) | 186, 194 |
| TseFI | GTSAC | 2 cut(s) | 352, 583 |
| Tsp45I | GTSAC | 2 cut(s) | 352, 583 |
| TspDTI | ATGAA | 4 cut(s) | 44, 48, 317, 362 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 450 |
| XapI | RAATTY | 1 cut(s) | 200 |
| XspI | CTAG | 3 cut(s) | 45, 110, 594 |