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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 606 |
| AccB1I | GGYRCC | 2 cut(s) | 561, 719 |
| AccIII | TCCGGA | 1 cut(s) | 526 |
| AciI | CCGC | 2 cut(s) | 250, 861 |
| AcoI | YGGCCR | 1 cut(s) | 706 |
| AcsI | RAATTY | 1 cut(s) | 317 |
| AcyI | GRCGYC | 2 cut(s) | 562, 720 |
| AfaI | GTAC | 1 cut(s) | 137 |
| AgsI | TTSAA | 2 cut(s) | 265, 757 |
| AjiI | CACGTC | 1 cut(s) | 25 |
| AjnI | CCWGG | 1 cut(s) | 18 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 177, 209 |
| AluBI | AGCT | 6 cut(s) | 44, 50, 439, 449, 842, 893 |
| AluI | AGCT | 6 cut(s) | 44, 50, 439, 449, 842, 893 |
| Alw21I | GWGCWC | 2 cut(s) | 441, 844 |
| Alw26I | GTCTC | 2 cut(s) | 181, 385 |
| Ama87I | CYCGRG | 1 cut(s) | 8 |
| Aor13HI | TCCGGA | 1 cut(s) | 526 |
| AoxI | GGCC | 1 cut(s) | 706 |
| ApeKI | GCWGC | 1 cut(s) | 68 |
| ApoI | RAATTY | 1 cut(s) | 317 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 294 |
| AspLEI | GCGC | 3 cut(s) | 564, 722, 763 |
| AspS9I | GGNCC | 1 cut(s) | 608 |
| AsuHPI | GGTGA | 1 cut(s) | 850 |
| AvaI | CYCGRG | 1 cut(s) | 8 |
| AvaII | GGWCC | 1 cut(s) | 608 |
| BaeGI | GKGCMC | 1 cut(s) | 829 |
| BalI | TGGCCA | 1 cut(s) | 708 |
| BanI | GGYRCC | 2 cut(s) | 561, 719 |
| BanII | GRGCYC | 2 cut(s) | 441, 844 |
| BauI | CACGAG | 1 cut(s) | 843 |
| BbsI | GAAGAC | 2 cut(s) | 162, 365 |
| Bbv12I | GWGCWC | 2 cut(s) | 441, 844 |
| BbvI | GCAGC | 1 cut(s) | 80 |
| BccI | CCATC | 4 cut(s) | 104, 231, 385, 747 |
| BciT130I | CCWGG | 1 cut(s) | 20 |
| BciVI | GTATCC | 1 cut(s) | 583 |
| BcoDI | GTCTC | 2 cut(s) | 181, 385 |
| BfaI | CTAG | 4 cut(s) | 15, 162, 227, 929 |
| BfoI | RGCGCY | 3 cut(s) | 565, 723, 764 |
| BfuI | GTATCC | 1 cut(s) | 583 |
| BisI | GCNGC | 1 cut(s) | 69 |
| BlsI | GCNGC | 1 cut(s) | 70 |
| Bme1390I | CCNGG | 1 cut(s) | 20 |
| Bme18I | GGWCC | 1 cut(s) | 608 |
| BmeT110I | CYCGRG | 1 cut(s) | 8 |
| BmgBI | CACGTC | 1 cut(s) | 25 |
| BmgT120I | GGNCC | 1 cut(s) | 608 |
| BmiI | GGNNCC | 3 cut(s) | 563, 662, 721 |
| BmrFI | CCNGG | 1 cut(s) | 20 |
| BmsI | GCATC | 1 cut(s) | 331 |
| BpiI | GAAGAC | 2 cut(s) | 162, 365 |
| BpmI | CTGGAG | 1 cut(s) | 116 |
| BpuEI | CTTGAG | 1 cut(s) | 30 |
| BsaHI | GRCGYC | 2 cut(s) | 562, 720 |
| BsaI | GGTCTC | 1 cut(s) | 181 |
| BsaWI | WCCGGW | 1 cut(s) | 526 |
| Bse1I | ACTGG | 1 cut(s) | 133 |
| BseAI | TCCGGA | 1 cut(s) | 526 |
| BseBI | CCWGG | 1 cut(s) | 20 |
| BseGI | GGATG | 2 cut(s) | 99, 127 |
| BseMII | CTCAG | 1 cut(s) | 807 |
| BseNI | ACTGG | 1 cut(s) | 133 |
| BseSI | GKGCMC | 1 cut(s) | 829 |
| BseXI | GCAGC | 1 cut(s) | 80 |
| BshFI | GGCC | 1 cut(s) | 708 |
| BshNI | GGYRCC | 2 cut(s) | 561, 719 |
| BsiHKAI | GWGCWC | 2 cut(s) | 441, 844 |
| BsiHKCI | CYCGRG | 1 cut(s) | 8 |
| BsiSI | CCGG | 1 cut(s) | 527 |
| BsmAI | GTCTC | 2 cut(s) | 181, 385 |
| BsmBI | CGTCTC | 1 cut(s) | 385 |
| BsnI | GGCC | 1 cut(s) | 708 |
| Bso31I | GGTCTC | 1 cut(s) | 181 |
| BsoBI | CYCGRG | 1 cut(s) | 8 |
| Bsp1286I | GDGCHC | 3 cut(s) | 441, 829, 844 |
| Bsp13I | TCCGGA | 1 cut(s) | 526 |
| Bsp143I | GATC | 3 cut(s) | 333, 503, 925 |
| BspACI | CCGC | 2 cut(s) | 250, 861 |
| BspANI | GGCC | 1 cut(s) | 708 |
| BspCNI | CTCAG | 1 cut(s) | 808 |
| BspEI | TCCGGA | 1 cut(s) | 526 |
| BspHI | TCATGA | 1 cut(s) | 433 |
| BspLI | GGNNCC | 3 cut(s) | 563, 662, 721 |
| BspT107I | GGYRCC | 2 cut(s) | 561, 719 |
| BspTNI | GGTCTC | 1 cut(s) | 181 |
| BsrI | ACTGG | 1 cut(s) | 133 |
| BssMI | GATC | 3 cut(s) | 333, 503, 925 |
| BssNI | GRCGYC | 2 cut(s) | 562, 720 |
| BssSI | CACGAG | 1 cut(s) | 843 |
| Bst2BI | CACGAG | 1 cut(s) | 843 |
| Bst2UI | CCWGG | 1 cut(s) | 20 |
| Bst6I | CTCTTC | 2 cut(s) | 225, 661 |
| BstACI | GRCGYC | 2 cut(s) | 562, 720 |
| BstC8I | GCNNGC | 1 cut(s) | 42 |
| BstDEI | CTNAG | 6 cut(s) | 73, 399, 552, 584, 732, 816 |
| BstF5I | GGATG | 2 cut(s) | 99, 127 |
| BstH2I | RGCGCY | 3 cut(s) | 565, 723, 764 |
| BstHHI | GCGC | 3 cut(s) | 564, 722, 763 |
| BstKTI | GATC | 3 cut(s) | 336, 506, 928 |
| BstMAI | GTCTC | 2 cut(s) | 181, 385 |
| BstMBI | GATC | 3 cut(s) | 333, 503, 925 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 56, 65, 568, 869, 890 |
| BstNI | CCWGG | 1 cut(s) | 20 |
| BstSCI | CCNGG | 1 cut(s) | 18 |
| BstSLI | GKGCMC | 1 cut(s) | 829 |
| BstV1I | GCAGC | 1 cut(s) | 80 |
| BstV2I | GAAGAC | 2 cut(s) | 162, 365 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 716 |
| BsuI | GTATCC | 1 cut(s) | 583 |
| BsuRI | GGCC | 1 cut(s) | 708 |
| BtgZI | GCGATG | 1 cut(s) | 359 |
| BtrI | CACGTC | 1 cut(s) | 25 |
| BtsCI | GGATG | 2 cut(s) | 99, 127 |
| BtsIMutI | CAGTG | 1 cut(s) | 513 |
| Cac8I | GCNNGC | 1 cut(s) | 42 |
| CciI | TCATGA | 1 cut(s) | 433 |
| CfoI | GCGC | 3 cut(s) | 564, 722, 763 |
| Cfr13I | GGNCC | 1 cut(s) | 608 |
| Csp6I | GTAC | 1 cut(s) | 136 |
| CviAII | CATG | 4 cut(s) | 434, 470, 677, 710 |
| CviQI | GTAC | 1 cut(s) | 136 |
| DdeI | CTNAG | 6 cut(s) | 73, 399, 552, 584, 732, 816 |
| DinI | GGCGCC | 2 cut(s) | 563, 721 |
| DpnI | GATC | 3 cut(s) | 335, 505, 927 |
| DpnII | GATC | 3 cut(s) | 333, 503, 925 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 606 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 606 |
| EaeI | YGGCCR | 1 cut(s) | 706 |
| Eam1104I | CTCTTC | 2 cut(s) | 225, 661 |
| EarI | CTCTTC | 2 cut(s) | 225, 661 |
| Ecl136II | GAGCTC | 2 cut(s) | 439, 842 |
| Eco24I | GRGCYC | 2 cut(s) | 441, 844 |
| Eco31I | GGTCTC | 1 cut(s) | 181 |
| Eco47I | GGWCC | 1 cut(s) | 608 |
| Eco53kI | GAGCTC | 2 cut(s) | 439, 842 |
| Eco88I | CYCGRG | 1 cut(s) | 8 |
| EcoICRI | GAGCTC | 2 cut(s) | 439, 842 |
| EcoRI | GAATTC | 1 cut(s) | 317 |
| EcoRII | CCWGG | 1 cut(s) | 18 |
| EcoT38I | GRGCYC | 2 cut(s) | 441, 844 |
| EgeI | GGCGCC | 2 cut(s) | 563, 721 |
| EheI | GGCGCC | 2 cut(s) | 563, 721 |
| Esp3I | CGTCTC | 1 cut(s) | 385 |
| FaeI | CATG | 4 cut(s) | 437, 473, 680, 713 |
| FatI | CATG | 4 cut(s) | 433, 469, 676, 709 |
| FauNDI | CATATG | 1 cut(s) | 117 |
| Fnu4HI | GCNGC | 1 cut(s) | 69 |
| FokI | GGATG | 2 cut(s) | 86, 134 |
| FriOI | GRGCYC | 2 cut(s) | 441, 844 |
| Fsp4HI | GCNGC | 1 cut(s) | 69 |
| FspBI | CTAG | 4 cut(s) | 15, 162, 227, 929 |
| GlaI | GCGC | 3 cut(s) | 563, 721, 762 |
| GluI | GCNGC | 1 cut(s) | 69 |
| GsuI | CTGGAG | 1 cut(s) | 116 |
| HaeII | RGCGCY | 3 cut(s) | 565, 723, 764 |
| HaeIII | GGCC | 1 cut(s) | 708 |
| HapII | CCGG | 1 cut(s) | 527 |
| HhaI | GCGC | 3 cut(s) | 564, 722, 763 |
| Hin1I | GRCGYC | 2 cut(s) | 562, 720 |
| Hin1II | CATG | 4 cut(s) | 437, 473, 680, 713 |
| Hin6I | GCGC | 3 cut(s) | 562, 720, 761 |
| HinP1I | GCGC | 3 cut(s) | 562, 720, 761 |
| HindIII | AAGCTT | 1 cut(s) | 48 |
| HinfI | GANTC | 6 cut(s) | 4, 109, 125, 209, 361, 530 |
| HpaII | CCGG | 1 cut(s) | 527 |
| HphI | GGTGA | 1 cut(s) | 850 |
| Hpy188I | TCNGA | 2 cut(s) | 289, 817 |
| HpyAV | CCTTC | 3 cut(s) | 159, 382, 626 |
| HpyCH4IV | ACGT | 2 cut(s) | 24, 201 |
| HpyCH4V | TGCA | 2 cut(s) | 386, 425 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 56, 65, 568, 869, 890 |
| HpyF3I | CTNAG | 6 cut(s) | 73, 399, 552, 584, 732, 816 |
| HpySE526I | ACGT | 2 cut(s) | 24, 201 |
| Hsp92I | GRCGYC | 2 cut(s) | 562, 720 |
| Hsp92II | CATG | 4 cut(s) | 437, 473, 680, 713 |
| HspAI | GCGC | 3 cut(s) | 562, 720, 761 |
| KasI | GGCGCC | 2 cut(s) | 561, 719 |
| Kpn2I | TCCGGA | 1 cut(s) | 526 |
| Kzo9I | GATC | 3 cut(s) | 333, 503, 925 |
| LmnI | GCTCC | 2 cut(s) | 135, 446 |
| LpnPI | CCDG | 7 cut(s) | 5, 32, 146, 234, 540, 582, 690 |
| Lsp1109I | GCAGC | 1 cut(s) | 80 |
| LweI | GCATC | 1 cut(s) | 331 |
| MaeI | CTAG | 4 cut(s) | 15, 162, 227, 929 |
| MaeII | ACGT | 2 cut(s) | 24, 201 |
| MaeIII | GTNAC | 3 cut(s) | 206, 635, 856 |
| MalI | GATC | 3 cut(s) | 335, 505, 927 |
| MboI | GATC | 3 cut(s) | 333, 503, 925 |
| MboII | GAAGA | 9 cut(s) | 164, 167, 197, 242, 370, 499, 678, 860, 932 |
| MhlI | GDGCHC | 3 cut(s) | 441, 829, 844 |
| MlsI | TGGCCA | 1 cut(s) | 708 |
| MluCI | AATT | 4 cut(s) | 317, 411, 496, 535 |
| MluNI | TGGCCA | 1 cut(s) | 708 |
| Mly113I | GGCGCC | 2 cut(s) | 562, 720 |
| MlyI | GAGTC | 3 cut(s) | 103, 203, 355 |
| MnlI | CCTC | 6 cut(s) | 257, 551, 559, 686, 712, 774 |
| Mox20I | TGGCCA | 1 cut(s) | 708 |
| MroI | TCCGGA | 1 cut(s) | 526 |
| MroXI | GAANNNNTTC | 1 cut(s) | 294 |
| MscI | TGGCCA | 1 cut(s) | 708 |
| MseI | TTAA | 2 cut(s) | 311, 420 |
| MslI | CAYNNNNRTG | 4 cut(s) | 104, 120, 714, 744 |
| Msp20I | TGGCCA | 1 cut(s) | 708 |
| MspI | CCGG | 1 cut(s) | 527 |
| MspR9I | CCNGG | 1 cut(s) | 20 |
| MvaI | CCWGG | 1 cut(s) | 20 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 56, 65, 568, 869, 890 |
| NarI | GGCGCC | 2 cut(s) | 562, 720 |
| NdeI | CATATG | 1 cut(s) | 117 |
| NdeII | GATC | 3 cut(s) | 333, 503, 925 |
| NlaIII | CATG | 4 cut(s) | 437, 473, 680, 713 |
| NlaIV | GGNNCC | 3 cut(s) | 563, 662, 721 |
| NmuCI | GTSAC | 2 cut(s) | 206, 856 |
| PaeR7I | CTCGAG | 1 cut(s) | 8 |
| PagI | TCATGA | 1 cut(s) | 433 |
| PdmI | GAANNNNTTC | 1 cut(s) | 294 |
| PfeI | GAWTC | 3 cut(s) | 4, 125, 530 |
| PkrI | GCNGC | 1 cut(s) | 70 |
| PleI | GAGTC | 3 cut(s) | 103, 203, 355 |
| PluTI | GGCGCC | 2 cut(s) | 565, 723 |
| PpsI | GAGTC | 3 cut(s) | 103, 203, 355 |
| Psp124BI | GAGCTC | 2 cut(s) | 441, 844 |
| Psp6I | CCWGG | 1 cut(s) | 18 |
| PspGI | CCWGG | 1 cut(s) | 18 |
| PspN4I | GGNNCC | 3 cut(s) | 563, 662, 721 |
| PspPI | GGNCC | 1 cut(s) | 608 |
| RsaI | GTAC | 1 cut(s) | 137 |
| RsaNI | GTAC | 1 cut(s) | 136 |
| RseI | CAYNNNNRTG | 4 cut(s) | 104, 120, 714, 744 |
| SacI | GAGCTC | 2 cut(s) | 441, 844 |
| SaqAI | TTAA | 2 cut(s) | 311, 420 |
| SatI | GCNGC | 1 cut(s) | 69 |
| Sau3AI | GATC | 3 cut(s) | 333, 503, 925 |
| Sau96I | GGNCC | 1 cut(s) | 608 |
| SchI | GAGTC | 3 cut(s) | 103, 203, 355 |
| ScrFI | CCNGG | 1 cut(s) | 20 |
| SduI | GDGCHC | 3 cut(s) | 441, 829, 844 |
| SfaNI | GCATC | 1 cut(s) | 331 |
| SfoI | GGCGCC | 2 cut(s) | 563, 721 |
| Sfr274I | CTCGAG | 1 cut(s) | 8 |
| SinI | GGWCC | 1 cut(s) | 608 |
| SlaI | CTCGAG | 1 cut(s) | 8 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 104, 120, 714, 744 |
| SmlI | CTYRAG | 2 cut(s) | 8, 45 |
| SmoI | CTYRAG | 2 cut(s) | 8, 45 |
| Sse9I | AATT | 4 cut(s) | 317, 411, 496, 535 |
| SsiI | CCGC | 2 cut(s) | 250, 861 |
| SspDI | GGCGCC | 2 cut(s) | 561, 719 |
| SspMI | CTAG | 4 cut(s) | 15, 162, 227, 929 |
| SstI | GAGCTC | 2 cut(s) | 441, 844 |
| StyD4I | CCNGG | 1 cut(s) | 18 |
| TaiI | ACGT | 2 cut(s) | 27, 204 |
| TaqI | TCGA | 6 cut(s) | 9, 183, 409, 500, 780, 802 |
| TasI | AATT | 4 cut(s) | 317, 411, 496, 535 |
| TfiI | GAWTC | 3 cut(s) | 4, 125, 530 |
| Tru1I | TTAA | 2 cut(s) | 311, 420 |
| Tru9I | TTAA | 2 cut(s) | 311, 420 |
| TscAI | CASTG | 1 cut(s) | 513 |
| TseFI | GTSAC | 2 cut(s) | 206, 856 |
| TseI | GCWGC | 1 cut(s) | 68 |
| Tsp45I | GTSAC | 2 cut(s) | 206, 856 |
| TspDTI | ATGAA | 4 cut(s) | 161, 165, 422, 467 |
| TspGWI | ACGGA | 2 cut(s) | 194, 673 |
| TspRI | CASTG | 1 cut(s) | 513 |
| VpaK11BI | GGWCC | 1 cut(s) | 608 |
| XapI | RAATTY | 1 cut(s) | 317 |
| XbaI | TCTAGA | 1 cut(s) | 928 |
| XhoI | CTCGAG | 1 cut(s) | 8 |
| XmnI | GAANNNNTTC | 1 cut(s) | 294 |
| XspI | CTAG | 4 cut(s) | 15, 162, 227, 929 |