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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 807 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1143 |
| AccB1I | GGYRCC | 1 cut(s) | 1297 |
| AccII | CGCG | 1 cut(s) | 1287 |
| AccIII | TCCGGA | 2 cut(s) | 541, 1063 |
| AciI | CCGC | 7 cut(s) | 132, 176, 218, 297, 335, 343, 775 |
| AclWI | GGATC | 2 cut(s) | 32, 1365 |
| AcoI | YGGCCR | 3 cut(s) | 195, 215, 850 |
| AcsI | RAATTY | 1 cut(s) | 537 |
| AcuI | CTGAAG | 1 cut(s) | 1338 |
| AcvI | CACGTG | 1 cut(s) | 321 |
| AcyI | GRCGYC | 1 cut(s) | 1298 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 193, 220, 499, 676, 752, 1094, 1165, 1266 |
| AflII | CTTAAG | 1 cut(s) | 524 |
| AflIII | ACRYGT | 2 cut(s) | 1213, 1381 |
| AgeI | ACCGGT | 1 cut(s) | 440 |
| AgsI | TTSAA | 5 cut(s) | 116, 146, 602, 790, 924 |
| AjiI | CACGTC | 2 cut(s) | 368, 413 |
| AjnI | CCWGG | 2 cut(s) | 158, 559 |
| AluBI | AGCT | 6 cut(s) | 590, 614, 694, 818, 976, 998 |
| AluI | AGCT | 6 cut(s) | 590, 614, 694, 818, 976, 998 |
| Alw21I | GWGCWC | 3 cut(s) | 576, 978, 1195 |
| Alw26I | GTCTC | 2 cut(s) | 837, 910 |
| Alw44I | GTGCAC | 1 cut(s) | 1191 |
| AlwI | GGATC | 2 cut(s) | 32, 1365 |
| Aor13HI | TCCGGA | 2 cut(s) | 541, 1063 |
| AoxI | GGCC | 4 cut(s) | 177, 195, 215, 850 |
| ApaLI | GTGCAC | 1 cut(s) | 1191 |
| ApeKI | GCWGC | 3 cut(s) | 286, 303, 712 |
| ApoI | RAATTY | 1 cut(s) | 537 |
| AsiGI | ACCGGT | 1 cut(s) | 440 |
| AspLEI | GCGC | 5 cut(s) | 101, 516, 1287, 1289, 1300 |
| AspS9I | GGNCC | 3 cut(s) | 178, 502, 1145 |
| AvaII | GGWCC | 2 cut(s) | 502, 1145 |
| AxyI | CCTNAGG | 1 cut(s) | 1116 |
| BaeGI | GKGCMC | 1 cut(s) | 1195 |
| BalI | TGGCCA | 1 cut(s) | 852 |
| BanI | GGYRCC | 1 cut(s) | 1297 |
| BanII | GRGCYC | 1 cut(s) | 978 |
| BauI | CACGAG | 1 cut(s) | 33 |
| BbrPI | CACGTG | 1 cut(s) | 321 |
| BbsI | GAAGAC | 2 cut(s) | 687, 890 |
| Bbv12I | GWGCWC | 3 cut(s) | 576, 978, 1195 |
| BbvI | GCAGC | 3 cut(s) | 298, 315, 724 |
| BccI | CCATC | 4 cut(s) | 527, 557, 756, 832 |
| BciT130I | CCWGG | 2 cut(s) | 160, 561 |
| BciVI | GTATCC | 1 cut(s) | 482 |
| BcoDI | GTCTC | 2 cut(s) | 837, 910 |
| BfaI | CTAG | 4 cut(s) | 81, 506, 707, 1038 |
| BfmI | CTRYAG | 3 cut(s) | 284, 301, 1075 |
| BfoI | RGCGCY | 1 cut(s) | 1301 |
| BfrI | CTTAAG | 1 cut(s) | 524 |
| BfuI | GTATCC | 1 cut(s) | 482 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1295 |
| BglII | AGATCT | 1 cut(s) | 148 |
| BisI | GCNGC | 7 cut(s) | 177, 218, 287, 304, 335, 343, 713 |
| BlsI | GCNGC | 7 cut(s) | 178, 219, 288, 305, 336, 344, 714 |
| Bme1390I | CCNGG | 2 cut(s) | 160, 561 |
| Bme18I | GGWCC | 2 cut(s) | 502, 1145 |
| BmgBI | CACGTC | 2 cut(s) | 368, 413 |
| BmgT120I | GGNCC | 3 cut(s) | 178, 502, 1145 |
| BmiI | GGNNCC | 7 cut(s) | 180, 225, 503, 1199, 1299, 1314, 1325 |
| BmrFI | CCNGG | 2 cut(s) | 160, 561 |
| BmsI | GCATC | 1 cut(s) | 393 |
| BoxI | GACNNNNGTC | 1 cut(s) | 479 |
| BpiI | GAAGAC | 2 cut(s) | 687, 890 |
| BpmI | CTGGAG | 1 cut(s) | 142 |
| BsaAI | YACGTR | 1 cut(s) | 321 |
| BsaBI | GATNNNNATC | 3 cut(s) | 51, 875, 1356 |
| BsaHI | GRCGYC | 1 cut(s) | 1298 |
| BsaJI | CCNNGG | 2 cut(s) | 1044, 1246 |
| BsaWI | WCCGGW | 3 cut(s) | 440, 541, 1063 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 193, 220, 499, 676, 752, 1094, 1165, 1266 |
| Bse118I | RCCGGY | 6 cut(s) | 172, 193, 213, 241, 440, 460 |
| Bse1I | ACTGG | 2 cut(s) | 388, 398 |
| Bse21I | CCTNAGG | 1 cut(s) | 1116 |
| Bse8I | GATNNNNATC | 3 cut(s) | 51, 875, 1356 |
| BseAI | TCCGGA | 2 cut(s) | 541, 1063 |
| BseBI | CCWGG | 2 cut(s) | 160, 561 |
| BseDI | CCNNGG | 2 cut(s) | 1044, 1246 |
| BseGI | GGATG | 2 cut(s) | 384, 549 |
| BseJI | GATNNNNATC | 3 cut(s) | 51, 875, 1356 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 193, 220, 499, 676, 752, 1094, 1165, 1266 |
| BseMII | CTCAG | 1 cut(s) | 441 |
| BseNI | ACTGG | 2 cut(s) | 388, 398 |
| BsePI | GCGCGC | 1 cut(s) | 1285 |
| BseRI | GAGGAG | 1 cut(s) | 1201 |
| BseSI | GKGCMC | 1 cut(s) | 1195 |
| BseX3I | CGGCCG | 2 cut(s) | 195, 215 |
| BseXI | GCAGC | 3 cut(s) | 298, 315, 724 |
| BseYI | CCCAGC | 1 cut(s) | 307 |
| BsgI | GTGCAG | 1 cut(s) | 894 |
| Bsh1236I | CGCG | 1 cut(s) | 1287 |
| Bsh1285I | CGRYCG | 2 cut(s) | 198, 218 |
| BshFI | GGCC | 4 cut(s) | 179, 197, 217, 852 |
| BshNI | GGYRCC | 1 cut(s) | 1297 |
| BshTI | ACCGGT | 1 cut(s) | 440 |
| BsiEI | CGRYCG | 2 cut(s) | 198, 218 |
| BsiHKAI | GWGCWC | 3 cut(s) | 576, 978, 1195 |
| BslFI | GGGAC | 1 cut(s) | 1139 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 193, 220, 499, 676, 752, 1094, 1165, 1266 |
| BsmAI | GTCTC | 2 cut(s) | 837, 910 |
| BsmBI | CGTCTC | 1 cut(s) | 910 |
| BsmFI | GGGAC | 1 cut(s) | 1139 |
| BsnI | GGCC | 4 cut(s) | 179, 197, 217, 852 |
| Bsp1286I | GDGCHC | 3 cut(s) | 576, 978, 1195 |
| Bsp13I | TCCGGA | 2 cut(s) | 541, 1063 |
| Bsp143I | GATC | 6 cut(s) | 37, 52, 148, 876, 1304, 1357 |
| Bsp19I | CCATGG | 1 cut(s) | 1246 |
| BspACI | CCGC | 7 cut(s) | 132, 176, 218, 297, 335, 343, 775 |
| BspANI | GGCC | 4 cut(s) | 179, 197, 217, 852 |
| BspCNI | CTCAG | 1 cut(s) | 442 |
| BspEI | TCCGGA | 2 cut(s) | 541, 1063 |
| BspFNI | CGCG | 1 cut(s) | 1287 |
| BspHI | TCATGA | 2 cut(s) | 630, 970 |
| BspLI | GGNNCC | 7 cut(s) | 180, 225, 503, 1199, 1299, 1314, 1325 |
| BspMAI | CTGCAG | 2 cut(s) | 288, 305 |
| BspPI | GGATC | 2 cut(s) | 32, 1365 |
| BspT107I | GGYRCC | 1 cut(s) | 1297 |
| BspTI | CTTAAG | 1 cut(s) | 524 |
| BsrFI | RCCGGY | 6 cut(s) | 172, 193, 213, 241, 440, 460 |
| BsrI | ACTGG | 2 cut(s) | 388, 398 |
| BssAI | RCCGGY | 6 cut(s) | 172, 193, 213, 241, 440, 460 |
| BssECI | CCNNGG | 2 cut(s) | 1044, 1246 |
| BssHII | GCGCGC | 1 cut(s) | 1285 |
| BssMI | GATC | 6 cut(s) | 37, 52, 148, 876, 1304, 1357 |
| BssNI | GRCGYC | 1 cut(s) | 1298 |
| BssSI | CACGAG | 1 cut(s) | 33 |
| BssT1I | CCWWGG | 1 cut(s) | 1246 |
| Bst2BI | CACGAG | 1 cut(s) | 33 |
| Bst2UI | CCWGG | 2 cut(s) | 160, 561 |
| Bst4CI | ACNGT | 2 cut(s) | 481, 1202 |
| Bst6I | CTCTTC | 1 cut(s) | 1214 |
| BstACI | GRCGYC | 1 cut(s) | 1298 |
| BstAFI | CTTAAG | 1 cut(s) | 524 |
| BstBAI | YACGTR | 1 cut(s) | 321 |
| BstC8I | GCNNGC | 9 cut(s) | 103, 284, 297, 301, 332, 382, 407, 588, 1287 |
| BstDEI | CTNAG | 3 cut(s) | 450, 1053, 1116 |
| BstDSI | CCRYGG | 2 cut(s) | 1044, 1246 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 674, 750 |
| BstF5I | GGATG | 2 cut(s) | 384, 549 |
| BstFNI | CGCG | 1 cut(s) | 1287 |
| BstH2I | RGCGCY | 1 cut(s) | 1301 |
| BstHHI | GCGC | 5 cut(s) | 101, 516, 1287, 1289, 1300 |
| BstKTI | GATC | 6 cut(s) | 40, 55, 151, 879, 1307, 1360 |
| BstMAI | GTCTC | 2 cut(s) | 837, 910 |
| BstMBI | GATC | 6 cut(s) | 37, 52, 148, 876, 1304, 1357 |
| BstMCI | CGRYCG | 2 cut(s) | 198, 218 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 292, 370, 415, 424, 433, 602, 611, 1295 |
| BstNI | CCWGG | 2 cut(s) | 160, 561 |
| BstNSI | RCATGY | 3 cut(s) | 105, 655, 1385 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 479 |
| BstSCI | CCNGG | 2 cut(s) | 158, 559 |
| BstSFI | CTRYAG | 3 cut(s) | 284, 301, 1075 |
| BstSLI | GKGCMC | 1 cut(s) | 1195 |
| BstUI | CGCG | 1 cut(s) | 1287 |
| BstV1I | GCAGC | 3 cut(s) | 298, 315, 724 |
| BstV2I | GAAGAC | 2 cut(s) | 687, 890 |
| BstX2I | RGATCY | 2 cut(s) | 37, 148 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 560 |
| BstYI | RGATCY | 2 cut(s) | 37, 148 |
| BstZI | CGGCCG | 2 cut(s) | 195, 215 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1116 |
| BsuI | GTATCC | 1 cut(s) | 482 |
| BsuRI | GGCC | 4 cut(s) | 179, 197, 217, 852 |
| BtgI | CCRYGG | 2 cut(s) | 1044, 1246 |
| BtgZI | GCGATG | 1 cut(s) | 775 |
| BtrI | CACGTC | 2 cut(s) | 368, 413 |
| BtsCI | GGATG | 2 cut(s) | 384, 549 |
| BtsIMutI | CAGTG | 1 cut(s) | 911 |
| Cac8I | GCNNGC | 9 cut(s) | 103, 284, 297, 301, 332, 382, 407, 588, 1287 |
| CciI | TCATGA | 2 cut(s) | 630, 970 |
| CfoI | GCGC | 5 cut(s) | 101, 516, 1287, 1289, 1300 |
| Cfr10I | RCCGGY | 6 cut(s) | 172, 193, 213, 241, 440, 460 |
| Cfr13I | GGNCC | 3 cut(s) | 178, 502, 1145 |
| CspAI | ACCGGT | 1 cut(s) | 440 |
| CviAII | CATG | 8 cut(s) | 102, 631, 643, 652, 971, 988, 1247, 1382 |
| DdeI | CTNAG | 3 cut(s) | 450, 1053, 1116 |
| DinI | GGCGCC | 1 cut(s) | 1299 |
| DpnI | GATC | 6 cut(s) | 39, 54, 150, 878, 1306, 1359 |
| DpnII | GATC | 6 cut(s) | 37, 52, 148, 876, 1304, 1357 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1143 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1143 |
| EaeI | YGGCCR | 3 cut(s) | 195, 215, 850 |
| EagI | CGGCCG | 2 cut(s) | 195, 215 |
| Eam1104I | CTCTTC | 1 cut(s) | 1214 |
| EarI | CTCTTC | 1 cut(s) | 1214 |
| Ecl136II | GAGCTC | 1 cut(s) | 976 |
| EclXI | CGGCCG | 2 cut(s) | 195, 215 |
| Eco130I | CCWWGG | 1 cut(s) | 1246 |
| Eco24I | GRGCYC | 1 cut(s) | 978 |
| Eco47I | GGWCC | 2 cut(s) | 502, 1145 |
| Eco52I | CGGCCG | 2 cut(s) | 195, 215 |
| Eco53kI | GAGCTC | 1 cut(s) | 976 |
| Eco57I | CTGAAG | 1 cut(s) | 1338 |
| Eco72I | CACGTG | 1 cut(s) | 321 |
| Eco81I | CCTNAGG | 1 cut(s) | 1116 |
| EcoICRI | GAGCTC | 1 cut(s) | 976 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 674, 750 |
| EcoO109I | RGGNCCY | 1 cut(s) | 502 |
| EcoRI | GAATTC | 1 cut(s) | 537 |
| EcoRII | CCWGG | 2 cut(s) | 158, 559 |
| EcoT14I | CCWWGG | 1 cut(s) | 1246 |
| EcoT38I | GRGCYC | 1 cut(s) | 978 |
| EgeI | GGCGCC | 1 cut(s) | 1299 |
| EheI | GGCGCC | 1 cut(s) | 1299 |
| ErhI | CCWWGG | 1 cut(s) | 1246 |
| Esp3I | CGTCTC | 1 cut(s) | 910 |
| FaeI | CATG | 8 cut(s) | 105, 634, 646, 655, 974, 991, 1250, 1385 |
| FaqI | GGGAC | 1 cut(s) | 1139 |
| FatI | CATG | 8 cut(s) | 101, 630, 642, 651, 970, 987, 1246, 1381 |
| FauI | CCCGC | 1 cut(s) | 304 |
| Fnu4HI | GCNGC | 7 cut(s) | 177, 218, 287, 304, 335, 343, 713 |
| FokI | GGATG | 2 cut(s) | 371, 536 |
| FriOI | GRGCYC | 1 cut(s) | 978 |
| Fsp4HI | GCNGC | 7 cut(s) | 177, 218, 287, 304, 335, 343, 713 |
| FspBI | CTAG | 4 cut(s) | 81, 506, 707, 1038 |
| GlaI | GCGC | 5 cut(s) | 100, 515, 1286, 1288, 1299 |
| GluI | GCNGC | 7 cut(s) | 177, 218, 287, 304, 335, 343, 713 |
| GsaI | CCCAGC | 1 cut(s) | 311 |
| GsuI | CTGGAG | 1 cut(s) | 142 |
| HaeII | RGCGCY | 1 cut(s) | 1301 |
| HaeIII | GGCC | 4 cut(s) | 179, 197, 217, 852 |
| HhaI | GCGC | 5 cut(s) | 101, 516, 1287, 1289, 1300 |
| Hin1I | GRCGYC | 1 cut(s) | 1298 |
| Hin1II | CATG | 8 cut(s) | 105, 634, 646, 655, 974, 991, 1250, 1385 |
| Hin6I | GCGC | 5 cut(s) | 99, 514, 1285, 1287, 1298 |
| HinP1I | GCGC | 5 cut(s) | 99, 514, 1285, 1287, 1298 |
| HincII | GTYRAC | 4 cut(s) | 446, 456, 466, 1211 |
| HindII | GTYRAC | 4 cut(s) | 446, 456, 466, 1211 |
| HinfI | GANTC | 5 cut(s) | 163, 452, 734, 886, 1067 |
| Hpy166II | GTNNAC | 6 cut(s) | 446, 456, 466, 946, 1193, 1211 |
| Hpy188I | TCNGA | 6 cut(s) | 474, 567, 814, 837, 936, 1243 |
| Hpy188III | TCNNGA | 9 cut(s) | 41, 167, 542, 631, 731, 746, 880, 971, 1064 |
| Hpy8I | GTNNAC | 6 cut(s) | 446, 456, 466, 946, 1193, 1211 |
| HpyAV | CCTTC | 5 cut(s) | 122, 737, 907, 1163, 1313 |
| HpyCH4III | ACNGT | 2 cut(s) | 481, 1202 |
| HpyCH4IV | ACGT | 8 cut(s) | 320, 367, 412, 570, 955, 993, 1138, 1213 |
| HpyCH4V | TGCA | 6 cut(s) | 105, 286, 303, 324, 911, 1193 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 292, 370, 415, 424, 433, 602, 611, 1295 |
| HpyF3I | CTNAG | 3 cut(s) | 450, 1053, 1116 |
| HpySE526I | ACGT | 8 cut(s) | 320, 367, 412, 570, 955, 993, 1138, 1213 |
| Hsp92I | GRCGYC | 1 cut(s) | 1298 |
| Hsp92II | CATG | 8 cut(s) | 105, 634, 646, 655, 974, 991, 1250, 1385 |
| HspAI | GCGC | 5 cut(s) | 99, 514, 1285, 1287, 1298 |
| KasI | GGCGCC | 1 cut(s) | 1297 |
| Kpn2I | TCCGGA | 2 cut(s) | 541, 1063 |
| Kzo9I | GATC | 6 cut(s) | 37, 52, 148, 876, 1304, 1357 |
| LmnI | GCTCC | 4 cut(s) | 660, 1105, 1312, 1323 |
| Lsp1109I | GCAGC | 3 cut(s) | 298, 315, 724 |
| LweI | GCATC | 1 cut(s) | 393 |
| MaeI | CTAG | 4 cut(s) | 81, 506, 707, 1038 |
| MaeII | ACGT | 8 cut(s) | 320, 367, 412, 570, 955, 993, 1138, 1213 |
| MaeIII | GTNAC | 3 cut(s) | 731, 1079, 1253 |
| MalI | GATC | 6 cut(s) | 39, 54, 150, 878, 1306, 1359 |
| MboI | GATC | 6 cut(s) | 37, 52, 148, 876, 1304, 1357 |
| MboII | GAAGA | 7 cut(s) | 56, 158, 287, 692, 895, 1036, 1231 |
| MflI | RGATCY | 2 cut(s) | 37, 148 |
| MhlI | GDGCHC | 3 cut(s) | 576, 978, 1195 |
| MlsI | TGGCCA | 1 cut(s) | 852 |
| MluCI | AATT | 6 cut(s) | 72, 357, 537, 624, 928, 1129 |
| MluNI | TGGCCA | 1 cut(s) | 852 |
| Mly113I | GGCGCC | 1 cut(s) | 1298 |
| MlyI | GAGTC | 5 cut(s) | 172, 461, 728, 880, 1076 |
| MmeI | TCCRAC | 3 cut(s) | 466, 497, 1266 |
| Mox20I | TGGCCA | 1 cut(s) | 852 |
| MroI | TCCGGA | 2 cut(s) | 541, 1063 |
| MscI | TGGCCA | 1 cut(s) | 852 |
| MseI | TTAA | 1 cut(s) | 525 |
| MslI | CAYNNNNRTG | 2 cut(s) | 645, 1337 |
| Msp20I | TGGCCA | 1 cut(s) | 852 |
| MspCI | CTTAAG | 1 cut(s) | 524 |
| MspR9I | CCNGG | 2 cut(s) | 160, 561 |
| MvaI | CCWGG | 2 cut(s) | 160, 561 |
| MvnI | CGCG | 1 cut(s) | 1287 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 292, 370, 415, 424, 433, 602, 611, 1295 |
| NarI | GGCGCC | 1 cut(s) | 1298 |
| NcoI | CCATGG | 1 cut(s) | 1246 |
| NdeII | GATC | 6 cut(s) | 37, 52, 148, 876, 1304, 1357 |
| NlaIII | CATG | 8 cut(s) | 105, 634, 646, 655, 974, 991, 1250, 1385 |
| NlaIV | GGNNCC | 7 cut(s) | 180, 225, 503, 1199, 1299, 1314, 1325 |
| NmuCI | GTSAC | 2 cut(s) | 731, 1079 |
| NspI | RCATGY | 3 cut(s) | 105, 655, 1385 |
| PaeI | GCATGC | 1 cut(s) | 105 |
| PagI | TCATGA | 2 cut(s) | 630, 970 |
| PauI | GCGCGC | 1 cut(s) | 1285 |
| PciI | ACATGT | 1 cut(s) | 1381 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1041 |
| PfoI | TCCNGGA | 1 cut(s) | 158 |
| PinAI | ACCGGT | 1 cut(s) | 440 |
| PkrI | GCNGC | 7 cut(s) | 178, 219, 288, 305, 336, 344, 714 |
| PleI | GAGTC | 5 cut(s) | 171, 460, 728, 880, 1075 |
| PluTI | GGCGCC | 1 cut(s) | 1301 |
| PmaCI | CACGTG | 1 cut(s) | 321 |
| PmlI | CACGTG | 1 cut(s) | 321 |
| PpsI | GAGTC | 5 cut(s) | 171, 460, 728, 880, 1075 |
| Ppu21I | YACGTR | 1 cut(s) | 321 |
| PpuMI | RGGWCCY | 1 cut(s) | 502 |
| PscI | ACATGT | 1 cut(s) | 1381 |
| PshAI | GACNNNNGTC | 1 cut(s) | 479 |
| PsiI | TTATAA | 1 cut(s) | 807 |
| Psp124BI | GAGCTC | 1 cut(s) | 978 |
| Psp5II | RGGWCCY | 1 cut(s) | 502 |
| Psp6I | CCWGG | 2 cut(s) | 158, 559 |
| PspCI | CACGTG | 1 cut(s) | 321 |
| PspFI | CCCAGC | 1 cut(s) | 307 |
| PspGI | CCWGG | 2 cut(s) | 158, 559 |
| PspN4I | GGNNCC | 7 cut(s) | 180, 225, 503, 1199, 1299, 1314, 1325 |
| PspPI | GGNCC | 3 cut(s) | 178, 502, 1145 |
| PspPPI | RGGWCCY | 1 cut(s) | 502 |
| PstI | CTGCAG | 2 cut(s) | 288, 305 |
| PsuI | RGATCY | 2 cut(s) | 37, 148 |
| PteI | GCGCGC | 1 cut(s) | 1285 |
| RseI | CAYNNNNRTG | 2 cut(s) | 645, 1337 |
| SacI | GAGCTC | 1 cut(s) | 978 |
| SaqAI | TTAA | 1 cut(s) | 525 |
| SatI | GCNGC | 7 cut(s) | 177, 218, 287, 304, 335, 343, 713 |
| Sau3AI | GATC | 6 cut(s) | 37, 52, 148, 876, 1304, 1357 |
| Sau96I | GGNCC | 3 cut(s) | 178, 502, 1145 |
| SchI | GAGTC | 5 cut(s) | 172, 461, 728, 880, 1076 |
| ScrFI | CCNGG | 2 cut(s) | 160, 561 |
| SduI | GDGCHC | 3 cut(s) | 576, 978, 1195 |
| SfaNI | GCATC | 1 cut(s) | 393 |
| SfcI | CTRYAG | 3 cut(s) | 284, 301, 1075 |
| SfoI | GGCGCC | 1 cut(s) | 1299 |
| SinI | GGWCC | 2 cut(s) | 502, 1145 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 645, 1337 |
| SmlI | CTYRAG | 1 cut(s) | 524 |
| SmoI | CTYRAG | 1 cut(s) | 524 |
| SphI | GCATGC | 1 cut(s) | 105 |
| Sse9I | AATT | 6 cut(s) | 72, 357, 537, 624, 928, 1129 |
| SsiI | CCGC | 7 cut(s) | 132, 176, 218, 297, 335, 343, 775 |
| SspDI | GGCGCC | 1 cut(s) | 1297 |
| SspI | AATATT | 1 cut(s) | 1015 |
| SspMI | CTAG | 4 cut(s) | 81, 506, 707, 1038 |
| SstI | GAGCTC | 1 cut(s) | 978 |
| StyD4I | CCNGG | 2 cut(s) | 158, 559 |
| StyI | CCWWGG | 1 cut(s) | 1246 |
| TaaI | ACNGT | 2 cut(s) | 481, 1202 |
| TaiI | ACGT | 8 cut(s) | 323, 370, 415, 573, 958, 996, 1141, 1216 |
| TaqI | TCGA | 6 cut(s) | 51, 89, 582, 879, 1303, 1350 |
| TasI | AATT | 6 cut(s) | 72, 357, 537, 624, 928, 1129 |
| TauI | GCSGC | 4 cut(s) | 179, 220, 337, 345 |
| Tru1I | TTAA | 1 cut(s) | 525 |
| Tru9I | TTAA | 1 cut(s) | 525 |
| TscAI | CASTG | 1 cut(s) | 918 |
| TseFI | GTSAC | 2 cut(s) | 731, 1079 |
| TseI | GCWGC | 3 cut(s) | 286, 303, 712 |
| Tsp45I | GTSAC | 2 cut(s) | 731, 1079 |
| TspDTI | ATGAA | 4 cut(s) | 659, 678, 959, 1004 |
| TspGWI | ACGGA | 1 cut(s) | 1210 |
| TspRI | CASTG | 1 cut(s) | 918 |
| Vha464I | CTTAAG | 1 cut(s) | 524 |
| VneI | GTGCAC | 1 cut(s) | 1191 |
| VpaK11BI | GGWCC | 2 cut(s) | 502, 1145 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 674, 750 |
| XapI | RAATTY | 1 cut(s) | 537 |
| XceI | RCATGY | 3 cut(s) | 105, 655, 1385 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 693 |
| XspI | CTAG | 4 cut(s) | 81, 506, 707, 1038 |