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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 731 |
| AciI | CCGC | 2 cut(s) | 250, 729 |
| AclI | AACGTT | 1 cut(s) | 201 |
| AclWI | GGATC | 4 cut(s) | 97, 110, 419, 614 |
| AcyI | GRCGYC | 1 cut(s) | 732 |
| AfaI | GTAC | 2 cut(s) | 143, 273 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 64, 569, 640 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AflIII | ACRYGT | 1 cut(s) | 688 |
| AgsI | TTSAA | 3 cut(s) | 13, 22, 265 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 265 |
| AhlI | ACTAGT | 1 cut(s) | 517 |
| AluBI | AGCT | 3 cut(s) | 169, 293, 473 |
| AluI | AGCT | 3 cut(s) | 169, 293, 473 |
| Alw21I | GWGCWC | 1 cut(s) | 670 |
| Alw26I | GTCTC | 2 cut(s) | 32, 385 |
| Alw44I | GTGCAC | 1 cut(s) | 666 |
| AlwI | GGATC | 4 cut(s) | 97, 110, 419, 614 |
| Ama87I | CYCGRG | 1 cut(s) | 182 |
| AoxI | GGCC | 1 cut(s) | 459 |
| ApaLI | GTGCAC | 1 cut(s) | 666 |
| ApeKI | GCWGC | 1 cut(s) | 187 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 294, 362 |
| AspLEI | GCGC | 4 cut(s) | 50, 81, 734, 773 |
| AspS9I | GGNCC | 3 cut(s) | 67, 157, 459 |
| AvaI | CYCGRG | 1 cut(s) | 182 |
| AvaII | GGWCC | 2 cut(s) | 67, 157 |
| AxyI | CCTNAGG | 1 cut(s) | 564 |
| BaeGI | GKGCMC | 1 cut(s) | 670 |
| BamHI | GGATCC | 1 cut(s) | 102 |
| BanI | GGYRCC | 1 cut(s) | 731 |
| BbsI | GAAGAC | 1 cut(s) | 365 |
| Bbv12I | GWGCWC | 1 cut(s) | 670 |
| BbvI | GCAGC | 1 cut(s) | 199 |
| BccI | CCATC | 3 cut(s) | 92, 231, 341 |
| BceAI | ACGGC | 1 cut(s) | 735 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 697, 731 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BclI | TGATCA | 1 cut(s) | 742 |
| BcoDI | GTCTC | 2 cut(s) | 32, 385 |
| BcuI | ACTAGT | 1 cut(s) | 517 |
| BfaI | CTAG | 3 cut(s) | 107, 513, 518 |
| BfmI | CTRYAG | 1 cut(s) | 676 |
| BfoI | RGCGCY | 1 cut(s) | 735 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| BisI | GCNGC | 2 cut(s) | 188, 730 |
| BlsI | GCNGC | 2 cut(s) | 189, 731 |
| Bme18I | GGWCC | 2 cut(s) | 67, 157 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 265 |
| BmeT110I | CYCGRG | 1 cut(s) | 182 |
| BmgT120I | GGNCC | 3 cut(s) | 67, 157, 459 |
| BmiI | GGNNCC | 6 cut(s) | 68, 104, 159, 460, 526, 733 |
| BmsI | GCATC | 1 cut(s) | 441 |
| BpiI | GAAGAC | 1 cut(s) | 365 |
| Bsa29I | ATCGAT | 1 cut(s) | 414 |
| BsaBI | GATNNNNATC | 1 cut(s) | 350 |
| BsaHI | GRCGYC | 1 cut(s) | 732 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 64, 569, 640 |
| Bse21I | CCTNAGG | 1 cut(s) | 564 |
| Bse8I | GATNNNNATC | 1 cut(s) | 350 |
| BseCI | ATCGAT | 1 cut(s) | 414 |
| BseJI | GATNNNNATC | 1 cut(s) | 350 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 64, 569, 640 |
| BseSI | GKGCMC | 1 cut(s) | 670 |
| BseXI | GCAGC | 1 cut(s) | 199 |
| BsgI | GTGCAG | 1 cut(s) | 369 |
| BshFI | GGCC | 1 cut(s) | 461 |
| BshNI | GGYRCC | 1 cut(s) | 731 |
| BshVI | ATCGAT | 1 cut(s) | 414 |
| BsiHKAI | GWGCWC | 1 cut(s) | 670 |
| BsiHKCI | CYCGRG | 1 cut(s) | 182 |
| BslFI | GGGAC | 1 cut(s) | 738 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 64, 569, 640 |
| BsmAI | GTCTC | 2 cut(s) | 32, 385 |
| BsmBI | CGTCTC | 1 cut(s) | 385 |
| BsmFI | GGGAC | 1 cut(s) | 738 |
| BsnI | GGCC | 1 cut(s) | 461 |
| BsoBI | CYCGRG | 1 cut(s) | 182 |
| Bsp1286I | GDGCHC | 1 cut(s) | 670 |
| Bsp143I | GATC | 7 cut(s) | 102, 114, 351, 411, 619, 682, 742 |
| BspACI | CCGC | 2 cut(s) | 250, 729 |
| BspANI | GGCC | 1 cut(s) | 461 |
| BspDI | ATCGAT | 1 cut(s) | 414 |
| BspHI | TCATGA | 1 cut(s) | 445 |
| BspLI | GGNNCC | 6 cut(s) | 68, 104, 159, 460, 526, 733 |
| BspPI | GGATC | 4 cut(s) | 97, 110, 419, 614 |
| BspQI | GCTCTTC | 1 cut(s) | 300 |
| BspT107I | GGYRCC | 1 cut(s) | 731 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BssMI | GATC | 7 cut(s) | 102, 114, 351, 411, 619, 682, 742 |
| BssNI | GRCGYC | 1 cut(s) | 732 |
| Bst4CI | ACNGT | 1 cut(s) | 677 |
| Bst6I | CTCTTC | 2 cut(s) | 300, 689 |
| BstACI | GRCGYC | 1 cut(s) | 732 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstC8I | GCNNGC | 1 cut(s) | 666 |
| BstDEI | CTNAG | 3 cut(s) | 474, 564, 591 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 567 |
| BstH2I | RGCGCY | 1 cut(s) | 735 |
| BstHHI | GCGC | 4 cut(s) | 50, 81, 734, 773 |
| BstKTI | GATC | 7 cut(s) | 105, 117, 354, 414, 622, 685, 745 |
| BstMAI | GTCTC | 2 cut(s) | 32, 385 |
| BstMBI | GATC | 7 cut(s) | 102, 114, 351, 411, 619, 682, 742 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 726, 768 |
| BstSFI | CTRYAG | 1 cut(s) | 676 |
| BstSLI | GKGCMC | 1 cut(s) | 670 |
| BstV1I | GCAGC | 1 cut(s) | 199 |
| BstV2I | GAAGAC | 1 cut(s) | 365 |
| BstX2I | RGATCY | 1 cut(s) | 102 |
| BstYI | RGATCY | 1 cut(s) | 102 |
| Bsu15I | ATCGAT | 1 cut(s) | 414 |
| Bsu36I | CCTNAGG | 1 cut(s) | 564 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BsuRI | GGCC | 1 cut(s) | 461 |
| BsuTUI | ATCGAT | 1 cut(s) | 414 |
| BtsIMutI | CAGTG | 2 cut(s) | 336, 386 |
| Cac8I | GCNNGC | 1 cut(s) | 666 |
| CciI | TCATGA | 1 cut(s) | 445 |
| CfoI | GCGC | 4 cut(s) | 50, 81, 734, 773 |
| Cfr13I | GGNCC | 3 cut(s) | 67, 157, 459 |
| ClaI | ATCGAT | 1 cut(s) | 414 |
| CseI | GACGC | 2 cut(s) | 438, 582 |
| Csp6I | GTAC | 2 cut(s) | 142, 272 |
| CviAII | CATG | 5 cut(s) | 446, 463, 482, 557, 577 |
| CviJI | RGCY | 8 cut(s) | 95, 169, 246, 293, 461, 473, 720, 750 |
| CviKI_1 | RGCY | 8 cut(s) | 95, 169, 246, 293, 461, 473, 720, 750 |
| CviQI | GTAC | 2 cut(s) | 142, 272 |
| DdeI | CTNAG | 3 cut(s) | 474, 564, 591 |
| DinI | GGCGCC | 1 cut(s) | 733 |
| DpnI | GATC | 7 cut(s) | 104, 116, 353, 413, 621, 684, 744 |
| DpnII | GATC | 7 cut(s) | 102, 114, 351, 411, 619, 682, 742 |
| DriI | GACNNNNNGTC | 1 cut(s) | 265 |
| Eam1104I | CTCTTC | 2 cut(s) | 300, 689 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 265 |
| EarI | CTCTTC | 2 cut(s) | 300, 689 |
| Eco47I | GGWCC | 2 cut(s) | 67, 157 |
| Eco81I | CCTNAGG | 1 cut(s) | 564 |
| Eco88I | CYCGRG | 1 cut(s) | 182 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 567 |
| EcoO109I | RGGNCCY | 1 cut(s) | 157 |
| EgeI | GGCGCC | 1 cut(s) | 733 |
| EheI | GGCGCC | 1 cut(s) | 733 |
| Esp3I | CGTCTC | 1 cut(s) | 385 |
| FaeI | CATG | 5 cut(s) | 449, 466, 485, 560, 580 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 760 |
| FaqI | GGGAC | 1 cut(s) | 738 |
| FatI | CATG | 5 cut(s) | 445, 462, 481, 556, 576 |
| FbaI | TGATCA | 1 cut(s) | 742 |
| Fnu4HI | GCNGC | 2 cut(s) | 188, 730 |
| Fsp4HI | GCNGC | 2 cut(s) | 188, 730 |
| FspBI | CTAG | 3 cut(s) | 107, 513, 518 |
| GlaI | GCGC | 4 cut(s) | 49, 80, 733, 772 |
| GluI | GCNGC | 2 cut(s) | 188, 730 |
| HaeII | RGCGCY | 1 cut(s) | 735 |
| HaeIII | GGCC | 1 cut(s) | 461 |
| HgaI | GACGC | 2 cut(s) | 438, 582 |
| HhaI | GCGC | 4 cut(s) | 50, 81, 734, 773 |
| Hin1I | GRCGYC | 1 cut(s) | 732 |
| Hin1II | CATG | 5 cut(s) | 449, 466, 485, 560, 580 |
| Hin6I | GCGC | 4 cut(s) | 48, 79, 732, 771 |
| HinP1I | GCGC | 4 cut(s) | 48, 79, 732, 771 |
| HinfI | GANTC | 2 cut(s) | 209, 542 |
| Hpy166II | GTNNAC | 1 cut(s) | 668 |
| Hpy188I | TCNGA | 4 cut(s) | 132, 289, 411, 619 |
| Hpy188III | TCNNGA | 4 cut(s) | 221, 355, 446, 513 |
| Hpy8I | GTNNAC | 1 cut(s) | 668 |
| HpyAV | CCTTC | 3 cut(s) | 148, 638, 724 |
| HpyCH4III | ACNGT | 1 cut(s) | 677 |
| HpyCH4IV | ACGT | 3 cut(s) | 201, 613, 688 |
| HpyCH4V | TGCA | 4 cut(s) | 386, 398, 539, 668 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 726, 768 |
| HpyF3I | CTNAG | 3 cut(s) | 474, 564, 591 |
| HpySE526I | ACGT | 3 cut(s) | 201, 613, 688 |
| Hsp92I | GRCGYC | 1 cut(s) | 732 |
| Hsp92II | CATG | 5 cut(s) | 449, 466, 485, 560, 580 |
| HspAI | GCGC | 4 cut(s) | 48, 79, 732, 771 |
| KasI | GGCGCC | 1 cut(s) | 731 |
| Ksp22I | TGATCA | 1 cut(s) | 742 |
| Kzo9I | GATC | 7 cut(s) | 102, 114, 351, 411, 619, 682, 742 |
| LguI | GCTCTTC | 1 cut(s) | 300 |
| LpnPI | CCDG | 4 cut(s) | 30, 36, 227, 234 |
| Lsp1109I | GCAGC | 1 cut(s) | 199 |
| LweI | GCATC | 1 cut(s) | 441 |
| MaeI | CTAG | 3 cut(s) | 107, 513, 518 |
| MaeII | ACGT | 3 cut(s) | 201, 613, 688 |
| MaeIII | GTNAC | 3 cut(s) | 5, 206, 257 |
| MalI | GATC | 7 cut(s) | 104, 116, 353, 413, 621, 684, 744 |
| MboI | GATC | 7 cut(s) | 102, 114, 351, 411, 619, 682, 742 |
| MboII | GAAGA | 4 cut(s) | 287, 370, 511, 706 |
| MflI | RGATCY | 1 cut(s) | 102 |
| MhlI | GDGCHC | 1 cut(s) | 670 |
| MluCI | AATT | 5 cut(s) | 17, 283, 403, 547, 604 |
| Mly113I | GGCGCC | 1 cut(s) | 732 |
| MlyI | GAGTC | 2 cut(s) | 203, 551 |
| MnlI | CCTC | 5 cut(s) | 155, 257, 563, 634, 698 |
| MroXI | GAANNNNTTC | 2 cut(s) | 294, 362 |
| MseI | TTAA | 1 cut(s) | 90 |
| MslI | CAYNNNNRTG | 1 cut(s) | 663 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 726, 768 |
| NarI | GGCGCC | 1 cut(s) | 732 |
| NdeII | GATC | 7 cut(s) | 102, 114, 351, 411, 619, 682, 742 |
| NlaIII | CATG | 5 cut(s) | 449, 466, 485, 560, 580 |
| NlaIV | GGNNCC | 6 cut(s) | 68, 104, 159, 460, 526, 733 |
| NmuCI | GTSAC | 2 cut(s) | 206, 257 |
| PaeR7I | CTCGAG | 1 cut(s) | 182 |
| PagI | TCATGA | 1 cut(s) | 445 |
| PciSI | GCTCTTC | 1 cut(s) | 300 |
| PdmI | GAANNNNTTC | 2 cut(s) | 294, 362 |
| PkrI | GCNGC | 2 cut(s) | 189, 731 |
| PleI | GAGTC | 2 cut(s) | 203, 550 |
| PluTI | GGCGCC | 1 cut(s) | 735 |
| PpsI | GAGTC | 2 cut(s) | 203, 550 |
| PpuMI | RGGWCCY | 1 cut(s) | 157 |
| Psp1406I | AACGTT | 1 cut(s) | 201 |
| Psp5II | RGGWCCY | 1 cut(s) | 157 |
| PspN4I | GGNNCC | 6 cut(s) | 68, 104, 159, 460, 526, 733 |
| PspPI | GGNCC | 3 cut(s) | 67, 157, 459 |
| PspPPI | RGGWCCY | 1 cut(s) | 157 |
| PspXI | VCTCGAGB | 1 cut(s) | 182 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 125, 157 |
| PsuI | RGATCY | 1 cut(s) | 102 |
| RsaI | GTAC | 2 cut(s) | 143, 273 |
| RsaNI | GTAC | 2 cut(s) | 142, 272 |
| RseI | CAYNNNNRTG | 1 cut(s) | 663 |
| SapI | GCTCTTC | 1 cut(s) | 300 |
| SaqAI | TTAA | 1 cut(s) | 90 |
| SatI | GCNGC | 2 cut(s) | 188, 730 |
| Sau3AI | GATC | 7 cut(s) | 102, 114, 351, 411, 619, 682, 742 |
| Sau96I | GGNCC | 3 cut(s) | 67, 157, 459 |
| SchI | GAGTC | 2 cut(s) | 203, 551 |
| SduI | GDGCHC | 1 cut(s) | 670 |
| SetI | ASST | 9 cut(s) | 147, 171, 204, 295, 374, 475, 616, 691, 778 |
| SfaNI | GCATC | 1 cut(s) | 441 |
| SfcI | CTRYAG | 1 cut(s) | 676 |
| SfoI | GGCGCC | 1 cut(s) | 733 |
| Sfr274I | CTCGAG | 1 cut(s) | 182 |
| SinI | GGWCC | 2 cut(s) | 67, 157 |
| SlaI | CTCGAG | 1 cut(s) | 182 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 663 |
| SmlI | CTYRAG | 2 cut(s) | 89, 182 |
| SmoI | CTYRAG | 2 cut(s) | 89, 182 |
| SpeI | ACTAGT | 1 cut(s) | 517 |
| Sse9I | AATT | 5 cut(s) | 17, 283, 403, 547, 604 |
| SsiI | CCGC | 2 cut(s) | 250, 729 |
| SspDI | GGCGCC | 1 cut(s) | 731 |
| SspMI | CTAG | 3 cut(s) | 107, 513, 518 |
| TaaI | ACNGT | 1 cut(s) | 677 |
| TaiI | ACGT | 3 cut(s) | 204, 616, 691 |
| TaqI | TCGA | 3 cut(s) | 183, 354, 414 |
| TasI | AATT | 5 cut(s) | 17, 283, 403, 547, 604 |
| TauI | GCSGC | 1 cut(s) | 732 |
| Tru1I | TTAA | 1 cut(s) | 90 |
| Tru9I | TTAA | 1 cut(s) | 90 |
| TscAI | CASTG | 2 cut(s) | 343, 393 |
| TseFI | GTSAC | 2 cut(s) | 206, 257 |
| TseI | GCWGC | 1 cut(s) | 187 |
| Tsp45I | GTSAC | 2 cut(s) | 206, 257 |
| TspDTI | ATGAA | 2 cut(s) | 434, 479 |
| TspGWI | ACGGA | 2 cut(s) | 59, 259 |
| TspRI | CASTG | 2 cut(s) | 343, 393 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| VneI | GTGCAC | 1 cut(s) | 666 |
| VpaK11BI | GGWCC | 2 cut(s) | 67, 157 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 567 |
| XbaI | TCTAGA | 1 cut(s) | 512 |
| XhoI | CTCGAG | 1 cut(s) | 182 |
| XmnI | GAANNNNTTC | 2 cut(s) | 294, 362 |
| XspI | CTAG | 3 cut(s) | 107, 513, 518 |