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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 684, 842 |
| AccII | CGCG | 1 cut(s) | 669 |
| AciI | CCGC | 1 cut(s) | 79 |
| AclWI | GGATC | 2 cut(s) | 551, 621 |
| AcoI | YGGCCR | 2 cut(s) | 763, 829 |
| AcsI | RAATTY | 1 cut(s) | 428 |
| AcyI | GRCGYC | 1 cut(s) | 685 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 680, 772 |
| AgsI | TTSAA | 2 cut(s) | 22, 166 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 5 cut(s) | 48, 155, 161, 562, 572 |
| AluI | AGCT | 5 cut(s) | 48, 155, 161, 562, 572 |
| Alw26I | GTCTC | 1 cut(s) | 496 |
| AlwI | GGATC | 2 cut(s) | 551, 621 |
| AoxI | GGCC | 3 cut(s) | 93, 763, 829 |
| ApoI | RAATTY | 1 cut(s) | 428 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AspLEI | GCGC | 2 cut(s) | 671, 687 |
| AspS9I | GGNCC | 1 cut(s) | 731 |
| AvaII | GGWCC | 1 cut(s) | 731 |
| BalI | TGGCCA | 1 cut(s) | 831 |
| BanI | GGYRCC | 2 cut(s) | 684, 842 |
| BbsI | GAAGAC | 2 cut(s) | 273, 476 |
| BccI | CCATC | 5 cut(s) | 92, 215, 342, 496, 534 |
| BceAI | ACGGC | 1 cut(s) | 778 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 341, 375, 515, 549 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BciVI | GTATCC | 3 cut(s) | 103, 190, 706 |
| BcoDI | GTCTC | 1 cut(s) | 496 |
| BfaI | CTAG | 4 cut(s) | 45, 126, 338, 650 |
| BfmI | CTRYAG | 1 cut(s) | 534 |
| BfoI | RGCGCY | 1 cut(s) | 688 |
| BfuI | GTATCC | 3 cut(s) | 103, 190, 706 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| Bme18I | GGWCC | 1 cut(s) | 731 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 1 cut(s) | 731 |
| BmiI | GGNNCC | 3 cut(s) | 686, 785, 844 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmsI | GCATC | 2 cut(s) | 94, 442 |
| BpiI | GAAGAC | 2 cut(s) | 273, 476 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 3 cut(s) | 74, 140, 141 |
| Bsa29I | ATCGAT | 1 cut(s) | 525 |
| BsaHI | GRCGYC | 1 cut(s) | 685 |
| BsaJI | CCNNGG | 1 cut(s) | 630 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 680, 772 |
| Bse1I | ACTGG | 1 cut(s) | 244 |
| Bse3DI | GCAATG | 1 cut(s) | 462 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseCI | ATCGAT | 1 cut(s) | 525 |
| BseDI | CCNNGG | 1 cut(s) | 630 |
| BseGI | GGATG | 4 cut(s) | 210, 545, 600, 728 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 680, 772 |
| BseMI | GCAATG | 1 cut(s) | 462 |
| BseNI | ACTGG | 1 cut(s) | 244 |
| Bsh1236I | CGCG | 1 cut(s) | 669 |
| BshFI | GGCC | 3 cut(s) | 95, 765, 831 |
| BshNI | GGYRCC | 2 cut(s) | 684, 842 |
| BshVI | ATCGAT | 1 cut(s) | 525 |
| BslFI | GGGAC | 1 cut(s) | 566 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 680, 772 |
| BsmAI | GTCTC | 1 cut(s) | 496 |
| BsmBI | CGTCTC | 1 cut(s) | 496 |
| BsmFI | GGGAC | 1 cut(s) | 566 |
| BsnI | GGCC | 3 cut(s) | 95, 765, 831 |
| Bsp143I | GATC | 3 cut(s) | 444, 543, 626 |
| BspACI | CCGC | 1 cut(s) | 79 |
| BspANI | GGCC | 3 cut(s) | 95, 765, 831 |
| BspDI | ATCGAT | 1 cut(s) | 525 |
| BspFNI | CGCG | 1 cut(s) | 669 |
| BspHI | TCATGA | 1 cut(s) | 556 |
| BspLI | GGNNCC | 3 cut(s) | 686, 785, 844 |
| BspMAI | CTGCAG | 1 cut(s) | 538 |
| BspPI | GGATC | 2 cut(s) | 551, 621 |
| BspT107I | GGYRCC | 2 cut(s) | 684, 842 |
| BsrDI | GCAATG | 1 cut(s) | 462 |
| BsrI | ACTGG | 1 cut(s) | 244 |
| BssECI | CCNNGG | 1 cut(s) | 630 |
| BssMI | GATC | 3 cut(s) | 444, 543, 626 |
| BssNI | GRCGYC | 1 cut(s) | 685 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstACI | GRCGYC | 1 cut(s) | 685 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 4 cut(s) | 184, 510, 675, 707 |
| BstDSI | CCRYGG | 1 cut(s) | 630 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 678 |
| BstF5I | GGATG | 4 cut(s) | 210, 545, 600, 728 |
| BstFNI | CGCG | 1 cut(s) | 669 |
| BstH2I | RGCGCY | 1 cut(s) | 688 |
| BstHHI | GCGC | 2 cut(s) | 671, 687 |
| BstKTI | GATC | 3 cut(s) | 447, 546, 629 |
| BstMAI | GTCTC | 1 cut(s) | 496 |
| BstMBI | GATC | 3 cut(s) | 444, 543, 626 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 167, 197, 503, 691 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstSFI | CTRYAG | 1 cut(s) | 534 |
| BstUI | CGCG | 1 cut(s) | 669 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 476 |
| BstX2I | RGATCY | 1 cut(s) | 626 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 839 |
| BstYI | RGATCY | 1 cut(s) | 626 |
| Bsu15I | ATCGAT | 1 cut(s) | 525 |
| BsuI | GTATCC | 3 cut(s) | 103, 190, 706 |
| BsuRI | GGCC | 3 cut(s) | 95, 765, 831 |
| BsuTUI | ATCGAT | 1 cut(s) | 525 |
| BtgI | CCRYGG | 1 cut(s) | 630 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 4 cut(s) | 210, 545, 600, 728 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| CciI | TCATGA | 1 cut(s) | 556 |
| CfoI | GCGC | 2 cut(s) | 671, 687 |
| Cfr13I | GGNCC | 1 cut(s) | 731 |
| ClaI | ATCGAT | 1 cut(s) | 525 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 3 cut(s) | 557, 593, 833 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 4 cut(s) | 184, 510, 675, 707 |
| DinI | GGCGCC | 1 cut(s) | 686 |
| DpnI | GATC | 3 cut(s) | 446, 545, 628 |
| DpnII | GATC | 3 cut(s) | 444, 543, 626 |
| EaeI | YGGCCR | 2 cut(s) | 763, 829 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco47I | GGWCC | 1 cut(s) | 731 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 678 |
| EcoRI | GAATTC | 1 cut(s) | 428 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EgeI | GGCGCC | 1 cut(s) | 686 |
| EheI | GGCGCC | 1 cut(s) | 686 |
| Esp3I | CGTCTC | 1 cut(s) | 496 |
| FaeI | CATG | 3 cut(s) | 560, 596, 836 |
| FaqI | GGGAC | 1 cut(s) | 566 |
| FatI | CATG | 3 cut(s) | 556, 592, 832 |
| FokI | GGATG | 4 cut(s) | 197, 552, 587, 735 |
| FspBI | CTAG | 4 cut(s) | 45, 126, 338, 650 |
| GlaI | GCGC | 2 cut(s) | 670, 686 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeII | RGCGCY | 1 cut(s) | 688 |
| HaeIII | GGCC | 3 cut(s) | 95, 765, 831 |
| HhaI | GCGC | 2 cut(s) | 671, 687 |
| Hin1I | GRCGYC | 1 cut(s) | 685 |
| Hin1II | CATG | 3 cut(s) | 560, 596, 836 |
| Hin6I | GCGC | 2 cut(s) | 669, 685 |
| HinP1I | GCGC | 2 cut(s) | 669, 685 |
| HincII | GTYRAC | 1 cut(s) | 797 |
| HindII | GTYRAC | 1 cut(s) | 797 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 8 cut(s) | 102, 220, 236, 320, 328, 472, 522, 653 |
| Hpy166II | GTNNAC | 1 cut(s) | 797 |
| Hpy188I | TCNGA | 1 cut(s) | 400 |
| Hpy188III | TCNNGA | 9 cut(s) | 51, 71, 119, 332, 386, 557, 624, 650, 720 |
| Hpy8I | GTNNAC | 1 cut(s) | 797 |
| HpyAV | CCTTC | 4 cut(s) | 270, 368, 493, 749 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 3 cut(s) | 135, 312, 799 |
| HpyCH4V | TGCA | 3 cut(s) | 455, 497, 536 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 167, 197, 503, 691 |
| HpyF3I | CTNAG | 4 cut(s) | 184, 510, 675, 707 |
| HpySE526I | ACGT | 3 cut(s) | 135, 312, 799 |
| Hsp92I | GRCGYC | 1 cut(s) | 685 |
| Hsp92II | CATG | 3 cut(s) | 560, 596, 836 |
| HspAI | GCGC | 2 cut(s) | 669, 685 |
| KasI | GGCGCC | 1 cut(s) | 684 |
| Kzo9I | GATC | 3 cut(s) | 444, 543, 626 |
| LmnI | GCTCC | 3 cut(s) | 34, 569, 676 |
| LweI | GCATC | 2 cut(s) | 94, 442 |
| MaeI | CTAG | 4 cut(s) | 45, 126, 338, 650 |
| MaeII | ACGT | 3 cut(s) | 135, 312, 799 |
| MaeIII | GTNAC | 4 cut(s) | 5, 317, 529, 758 |
| MalI | GATC | 3 cut(s) | 446, 545, 628 |
| MboI | GATC | 3 cut(s) | 444, 543, 626 |
| MboII | GAAGA | 5 cut(s) | 275, 278, 308, 481, 622 |
| MflI | RGATCY | 1 cut(s) | 626 |
| MlsI | TGGCCA | 1 cut(s) | 831 |
| MluCI | AATT | 4 cut(s) | 17, 428, 619, 658 |
| MluNI | TGGCCA | 1 cut(s) | 831 |
| Mly113I | GGCGCC | 1 cut(s) | 685 |
| MlyI | GAGTC | 3 cut(s) | 214, 314, 466 |
| MnlI | CCTC | 6 cut(s) | 181, 674, 785, 805, 809, 835 |
| Mox20I | TGGCCA | 1 cut(s) | 831 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MscI | TGGCCA | 1 cut(s) | 831 |
| MseI | TTAA | 3 cut(s) | 375, 414, 422 |
| MslI | CAYNNNNRTG | 4 cut(s) | 215, 231, 605, 837 |
| Msp20I | TGGCCA | 1 cut(s) | 831 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MvnI | CGCG | 1 cut(s) | 669 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 167, 197, 503, 691 |
| NarI | GGCGCC | 1 cut(s) | 685 |
| NdeII | GATC | 3 cut(s) | 444, 543, 626 |
| NlaIII | CATG | 3 cut(s) | 560, 596, 836 |
| NlaIV | GGNNCC | 3 cut(s) | 686, 785, 844 |
| NmuCI | GTSAC | 1 cut(s) | 317 |
| PagI | TCATGA | 1 cut(s) | 556 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 5 cut(s) | 102, 236, 328, 522, 653 |
| PleI | GAGTC | 3 cut(s) | 214, 314, 466 |
| PluTI | GGCGCC | 1 cut(s) | 688 |
| PpsI | GAGTC | 3 cut(s) | 214, 314, 466 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 3 cut(s) | 686, 785, 844 |
| PspPI | GGNCC | 1 cut(s) | 731 |
| PstI | CTGCAG | 1 cut(s) | 538 |
| PsuI | RGATCY | 1 cut(s) | 626 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 4 cut(s) | 215, 231, 605, 837 |
| SaqAI | TTAA | 3 cut(s) | 375, 414, 422 |
| Sau3AI | GATC | 3 cut(s) | 444, 543, 626 |
| Sau96I | GGNCC | 1 cut(s) | 731 |
| SchI | GAGTC | 3 cut(s) | 214, 314, 466 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SfaNI | GCATC | 2 cut(s) | 94, 442 |
| SfcI | CTRYAG | 1 cut(s) | 534 |
| SfoI | GGCGCC | 1 cut(s) | 686 |
| SinI | GGWCC | 1 cut(s) | 731 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 215, 231, 605, 837 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 4 cut(s) | 17, 428, 619, 658 |
| SsiI | CCGC | 1 cut(s) | 79 |
| SspDI | GGCGCC | 1 cut(s) | 684 |
| SspMI | CTAG | 4 cut(s) | 45, 126, 338, 650 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 3 cut(s) | 138, 315, 802 |
| TaqI | TCGA | 4 cut(s) | 294, 520, 525, 623 |
| TasI | AATT | 4 cut(s) | 17, 428, 619, 658 |
| TfiI | GAWTC | 5 cut(s) | 102, 236, 328, 522, 653 |
| Tru1I | TTAA | 3 cut(s) | 375, 414, 422 |
| Tru9I | TTAA | 3 cut(s) | 375, 414, 422 |
| TseFI | GTSAC | 1 cut(s) | 317 |
| Tsp45I | GTSAC | 1 cut(s) | 317 |
| TspDTI | ATGAA | 4 cut(s) | 272, 276, 545, 590 |
| TspGWI | ACGGA | 3 cut(s) | 305, 619, 796 |
| VpaK11BI | GGWCC | 1 cut(s) | 731 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 678 |
| XapI | RAATTY | 1 cut(s) | 428 |
| XbaI | TCTAGA | 1 cut(s) | 649 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 4 cut(s) | 45, 126, 338, 650 |