No description available
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 45 - 159 | 7.6e-06 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 699 |
| AccB1I | GGYRCC | 1 cut(s) | 654 |
| AccII | CGCG | 1 cut(s) | 639 |
| AciI | CCGC | 3 cut(s) | 361, 733, 954 |
| AclWI | GGATC | 1 cut(s) | 591 |
| AcsI | RAATTY | 1 cut(s) | 428 |
| AcuI | CTGAAG | 1 cut(s) | 420 |
| AgsI | TTSAA | 3 cut(s) | 53, 376, 850 |
| AhlI | ACTAGT | 1 cut(s) | 221 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 5 cut(s) | 155, 161, 532, 542, 935 |
| AluI | AGCT | 5 cut(s) | 155, 161, 532, 542, 935 |
| Alw21I | GWGCWC | 2 cut(s) | 534, 937 |
| AlwI | GGATC | 1 cut(s) | 591 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 1 cut(s) | 813 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 1 cut(s) | 428 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AspA2I | CCTAGG | 1 cut(s) | 644 |
| AspLEI | GCGC | 2 cut(s) | 641, 856 |
| AspS9I | GGNCC | 2 cut(s) | 701, 813 |
| AsuHPI | GGTGA | 1 cut(s) | 943 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AvaII | GGWCC | 1 cut(s) | 701 |
| AvrII | CCTAGG | 1 cut(s) | 644 |
| BaeGI | GKGCMC | 1 cut(s) | 922 |
| BanI | GGYRCC | 1 cut(s) | 654 |
| BanII | GRGCYC | 2 cut(s) | 534, 937 |
| BauI | CACGAG | 1 cut(s) | 936 |
| BbsI | GAAGAC | 2 cut(s) | 273, 476 |
| Bbv12I | GWGCWC | 2 cut(s) | 534, 937 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 4 cut(s) | 92, 215, 342, 840 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 485, 519 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BciVI | GTATCC | 2 cut(s) | 103, 676 |
| BclI | TGATCA | 1 cut(s) | 910 |
| BcuI | ACTAGT | 1 cut(s) | 221 |
| BfaI | CTAG | 6 cut(s) | 126, 222, 338, 645, 798, 1022 |
| BfoI | RGCGCY | 1 cut(s) | 857 |
| BfuI | GTATCC | 2 cut(s) | 103, 676 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlnI | CCTAGG | 1 cut(s) | 644 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| Bme18I | GGWCC | 1 cut(s) | 701 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 2 cut(s) | 701, 813 |
| BmiI | GGNNCC | 2 cut(s) | 656, 814 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BpiI | GAAGAC | 2 cut(s) | 273, 476 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| Bsa29I | ATCGAT | 1 cut(s) | 495 |
| BsaJI | CCNNGG | 2 cut(s) | 600, 644 |
| Bse1I | ACTGG | 1 cut(s) | 244 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseCI | ATCGAT | 1 cut(s) | 495 |
| BseDI | CCNNGG | 2 cut(s) | 600, 644 |
| BseGI | GGATG | 3 cut(s) | 210, 238, 570 |
| BseNI | ACTGG | 1 cut(s) | 244 |
| BseSI | GKGCMC | 1 cut(s) | 922 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| Bsh1236I | CGCG | 1 cut(s) | 639 |
| BshFI | GGCC | 1 cut(s) | 815 |
| BshNI | GGYRCC | 1 cut(s) | 654 |
| BshVI | ATCGAT | 1 cut(s) | 495 |
| BsiHKAI | GWGCWC | 2 cut(s) | 534, 937 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsnI | GGCC | 1 cut(s) | 815 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 3 cut(s) | 534, 922, 937 |
| Bsp143I | GATC | 5 cut(s) | 444, 596, 910, 1006, 1018 |
| BspACI | CCGC | 3 cut(s) | 361, 733, 954 |
| BspANI | GGCC | 1 cut(s) | 815 |
| BspDI | ATCGAT | 1 cut(s) | 495 |
| BspFNI | CGCG | 1 cut(s) | 639 |
| BspHI | TCATGA | 2 cut(s) | 526, 1009 |
| BspLI | GGNNCC | 2 cut(s) | 656, 814 |
| BspPI | GGATC | 1 cut(s) | 591 |
| BspT107I | GGYRCC | 1 cut(s) | 654 |
| BsrI | ACTGG | 1 cut(s) | 244 |
| BssECI | CCNNGG | 2 cut(s) | 600, 644 |
| BssMI | GATC | 5 cut(s) | 444, 596, 910, 1006, 1018 |
| BssSI | CACGAG | 1 cut(s) | 936 |
| BssT1I | CCWWGG | 1 cut(s) | 644 |
| Bst2BI | CACGAG | 1 cut(s) | 936 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| Bst6I | CTCTTC | 1 cut(s) | 754 |
| BstC8I | GCNNGC | 1 cut(s) | 153 |
| BstDEI | CTNAG | 4 cut(s) | 184, 480, 677, 825 |
| BstDSI | CCRYGG | 1 cut(s) | 600 |
| BstEII | GGTNACC | 1 cut(s) | 728 |
| BstF5I | GGATG | 3 cut(s) | 210, 238, 570 |
| BstFNI | CGCG | 1 cut(s) | 639 |
| BstH2I | RGCGCY | 1 cut(s) | 857 |
| BstHHI | GCGC | 2 cut(s) | 641, 856 |
| BstKTI | GATC | 5 cut(s) | 447, 599, 913, 1009, 1021 |
| BstMBI | GATC | 5 cut(s) | 444, 596, 910, 1006, 1018 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 188, 197, 962 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstPI | GGTNACC | 1 cut(s) | 728 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstSLI | GKGCMC | 1 cut(s) | 922 |
| BstUI | CGCG | 1 cut(s) | 639 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 476 |
| BstX2I | RGATCY | 1 cut(s) | 596 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 809 |
| BstYI | RGATCY | 1 cut(s) | 596 |
| Bsu15I | ATCGAT | 1 cut(s) | 495 |
| BsuI | GTATCC | 2 cut(s) | 103, 676 |
| BsuRI | GGCC | 1 cut(s) | 815 |
| BsuTUI | ATCGAT | 1 cut(s) | 495 |
| BtgI | CCRYGG | 1 cut(s) | 600 |
| BtgZI | GCGATG | 1 cut(s) | 470 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 3 cut(s) | 210, 238, 570 |
| Cac8I | GCNNGC | 1 cut(s) | 153 |
| CciI | TCATGA | 2 cut(s) | 526, 1009 |
| CfoI | GCGC | 2 cut(s) | 641, 856 |
| Cfr13I | GGNCC | 2 cut(s) | 701, 813 |
| ClaI | ATCGAT | 1 cut(s) | 495 |
| CviAII | CATG | 4 cut(s) | 527, 563, 803, 1010 |
| DdeI | CTNAG | 4 cut(s) | 184, 480, 677, 825 |
| DpnI | GATC | 5 cut(s) | 446, 598, 912, 1008, 1020 |
| DpnII | GATC | 5 cut(s) | 444, 596, 910, 1006, 1018 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 699 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 699 |
| Eam1104I | CTCTTC | 1 cut(s) | 754 |
| EarI | CTCTTC | 1 cut(s) | 754 |
| Ecl136II | GAGCTC | 2 cut(s) | 532, 935 |
| Eco130I | CCWWGG | 1 cut(s) | 644 |
| Eco24I | GRGCYC | 2 cut(s) | 534, 937 |
| Eco32I | GATATC | 1 cut(s) | 76 |
| Eco47I | GGWCC | 1 cut(s) | 701 |
| Eco53kI | GAGCTC | 2 cut(s) | 532, 935 |
| Eco57I | CTGAAG | 1 cut(s) | 420 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| Eco91I | GGTNACC | 1 cut(s) | 728 |
| EcoICRI | GAGCTC | 2 cut(s) | 532, 935 |
| EcoO65I | GGTNACC | 1 cut(s) | 728 |
| EcoRI | GAATTC | 1 cut(s) | 428 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 1 cut(s) | 76 |
| EcoT14I | CCWWGG | 1 cut(s) | 644 |
| EcoT38I | GRGCYC | 2 cut(s) | 534, 937 |
| ErhI | CCWWGG | 1 cut(s) | 644 |
| FaeI | CATG | 4 cut(s) | 530, 566, 806, 1013 |
| FatI | CATG | 4 cut(s) | 526, 562, 802, 1009 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| FbaI | TGATCA | 1 cut(s) | 910 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 3 cut(s) | 197, 245, 557 |
| FriOI | GRGCYC | 2 cut(s) | 534, 937 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 6 cut(s) | 126, 222, 338, 645, 798, 1022 |
| GlaI | GCGC | 2 cut(s) | 640, 855 |
| GluI | GCNGC | 1 cut(s) | 180 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeII | RGCGCY | 1 cut(s) | 857 |
| HaeIII | GGCC | 1 cut(s) | 815 |
| HhaI | GCGC | 2 cut(s) | 641, 856 |
| Hin1II | CATG | 4 cut(s) | 530, 566, 806, 1013 |
| Hin6I | GCGC | 2 cut(s) | 639, 854 |
| HinP1I | GCGC | 2 cut(s) | 639, 854 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 8 cut(s) | 102, 115, 236, 320, 472, 492, 513, 623 |
| HphI | GGTGA | 1 cut(s) | 943 |
| Hpy166II | GTNNAC | 1 cut(s) | 767 |
| Hpy188I | TCNGA | 3 cut(s) | 97, 400, 910 |
| Hpy8I | GTNNAC | 1 cut(s) | 767 |
| HpyAV | CCTTC | 3 cut(s) | 270, 645, 719 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 5 cut(s) | 135, 312, 694, 769, 843 |
| HpyCH4V | TGCA | 1 cut(s) | 506 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 188, 197, 962 |
| HpyF3I | CTNAG | 4 cut(s) | 184, 480, 677, 825 |
| HpySE526I | ACGT | 5 cut(s) | 135, 312, 694, 769, 843 |
| Hsp92II | CATG | 4 cut(s) | 530, 566, 806, 1013 |
| HspAI | GCGC | 2 cut(s) | 639, 854 |
| Ksp22I | TGATCA | 1 cut(s) | 910 |
| Kzo9I | GATC | 5 cut(s) | 444, 596, 910, 1006, 1018 |
| LmnI | GCTCC | 3 cut(s) | 34, 246, 539 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 6 cut(s) | 126, 222, 338, 645, 798, 1022 |
| MaeII | ACGT | 5 cut(s) | 135, 312, 694, 769, 843 |
| MaeIII | GTNAC | 5 cut(s) | 5, 317, 499, 728, 949 |
| MalI | GATC | 5 cut(s) | 446, 598, 912, 1008, 1020 |
| MboI | GATC | 5 cut(s) | 444, 596, 910, 1006, 1018 |
| MboII | GAAGA | 9 cut(s) | 275, 278, 308, 481, 592, 771, 953, 1016, 1025 |
| MflI | RGATCY | 1 cut(s) | 596 |
| MhlI | GDGCHC | 3 cut(s) | 534, 922, 937 |
| MluCI | AATT | 4 cut(s) | 17, 428, 589, 628 |
| MlyI | GAGTC | 2 cut(s) | 314, 466 |
| MnlI | CCTC | 6 cut(s) | 181, 368, 755, 779, 805, 867 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MseI | TTAA | 2 cut(s) | 414, 422 |
| MslI | CAYNNNNRTG | 6 cut(s) | 215, 231, 575, 807, 837, 1014 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MvnI | CGCG | 1 cut(s) | 639 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 188, 197, 962 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 5 cut(s) | 444, 596, 910, 1006, 1018 |
| NlaIII | CATG | 4 cut(s) | 530, 566, 806, 1013 |
| NlaIV | GGNNCC | 2 cut(s) | 656, 814 |
| NmuCI | GTSAC | 2 cut(s) | 317, 949 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 2 cut(s) | 526, 1009 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 76 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 6 cut(s) | 102, 115, 236, 492, 513, 623 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 2 cut(s) | 314, 466 |
| PpsI | GAGTC | 2 cut(s) | 314, 466 |
| Psp124BI | GAGCTC | 2 cut(s) | 534, 937 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspEI | GGTNACC | 1 cut(s) | 728 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 2 cut(s) | 656, 814 |
| PspPI | GGNCC | 2 cut(s) | 701, 813 |
| PsuI | RGATCY | 1 cut(s) | 596 |
| RseI | CAYNNNNRTG | 6 cut(s) | 215, 231, 575, 807, 837, 1014 |
| SacI | GAGCTC | 2 cut(s) | 534, 937 |
| SaqAI | TTAA | 2 cut(s) | 414, 422 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 5 cut(s) | 444, 596, 910, 1006, 1018 |
| Sau96I | GGNCC | 2 cut(s) | 701, 813 |
| SchI | GAGTC | 2 cut(s) | 314, 466 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SduI | GDGCHC | 3 cut(s) | 534, 922, 937 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SinI | GGWCC | 1 cut(s) | 701 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 215, 231, 575, 807, 837, 1014 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SpeI | ACTAGT | 1 cut(s) | 221 |
| Sse9I | AATT | 4 cut(s) | 17, 428, 589, 628 |
| SsiI | CCGC | 3 cut(s) | 361, 733, 954 |
| SspMI | CTAG | 6 cut(s) | 126, 222, 338, 645, 798, 1022 |
| SstI | GAGCTC | 2 cut(s) | 534, 937 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| StyI | CCWWGG | 1 cut(s) | 644 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 5 cut(s) | 138, 315, 697, 772, 846 |
| TaqI | TCGA | 6 cut(s) | 120, 294, 490, 495, 593, 895 |
| TasI | AATT | 4 cut(s) | 17, 428, 589, 628 |
| TfiI | GAWTC | 6 cut(s) | 102, 115, 236, 492, 513, 623 |
| Tru1I | TTAA | 2 cut(s) | 414, 422 |
| Tru9I | TTAA | 2 cut(s) | 414, 422 |
| TseFI | GTSAC | 2 cut(s) | 317, 949 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 2 cut(s) | 317, 949 |
| TspDTI | ATGAA | 4 cut(s) | 272, 276, 515, 1026 |
| TspGWI | ACGGA | 3 cut(s) | 68, 305, 589 |
| VpaK11BI | GGWCC | 1 cut(s) | 701 |
| XapI | RAATTY | 1 cut(s) | 428 |
| XbaI | TCTAGA | 1 cut(s) | 1021 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmaJI | CCTAGG | 1 cut(s) | 644 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 6 cut(s) | 126, 222, 338, 645, 798, 1022 |