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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 735 |
| AccI | GTMKAC | 1 cut(s) | 764 |
| AciI | CCGC | 4 cut(s) | 79, 361, 412, 814 |
| AclWI | GGATC | 3 cut(s) | 602, 672, 776 |
| AcsI | RAATTY | 1 cut(s) | 479 |
| AcyI | GRCGYC | 1 cut(s) | 736 |
| AflIII | ACRYGT | 1 cut(s) | 694 |
| AgsI | TTSAA | 1 cut(s) | 427 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 3 cut(s) | 155, 613, 623 |
| AluI | AGCT | 3 cut(s) | 155, 613, 623 |
| Alw21I | GWGCWC | 1 cut(s) | 615 |
| Alw26I | GTCTC | 1 cut(s) | 292 |
| AlwI | GGATC | 3 cut(s) | 602, 672, 776 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 1 cut(s) | 93 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 1 cut(s) | 479 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 456, 696 |
| AspLEI | GCGC | 1 cut(s) | 738 |
| AsuHPI | GGTGA | 1 cut(s) | 211 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| BanI | GGYRCC | 1 cut(s) | 735 |
| BanII | GRGCYC | 1 cut(s) | 615 |
| BbsI | GAAGAC | 2 cut(s) | 273, 527 |
| Bbv12I | GWGCWC | 1 cut(s) | 615 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 5 cut(s) | 92, 342, 393, 547, 548 |
| BcoDI | GTCTC | 1 cut(s) | 292 |
| BfaI | CTAG | 2 cut(s) | 126, 338 |
| BfoI | RGCGCY | 1 cut(s) | 739 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmiI | GGNNCC | 1 cut(s) | 737 |
| BmsI | GCATC | 2 cut(s) | 94, 493 |
| BpiI | GAAGAC | 2 cut(s) | 273, 527 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| Bpu10I | CCTNAGC | 1 cut(s) | 156 |
| BpuEI | CTTGAG | 1 cut(s) | 74 |
| BsaHI | GRCGYC | 1 cut(s) | 736 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| BsaJI | CCNNGG | 1 cut(s) | 681 |
| Bse1I | ACTGG | 2 cut(s) | 49, 244 |
| BseDI | CCNNGG | 1 cut(s) | 681 |
| BseGI | GGATG | 1 cut(s) | 210 |
| BseMII | CTCAG | 1 cut(s) | 170 |
| BseNI | ACTGG | 2 cut(s) | 49, 244 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BshNI | GGYRCC | 1 cut(s) | 735 |
| BsiHKAI | GWGCWC | 1 cut(s) | 615 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsmAI | GTCTC | 1 cut(s) | 292 |
| BsnI | GGCC | 1 cut(s) | 95 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 1 cut(s) | 615 |
| Bsp143I | GATC | 4 cut(s) | 495, 594, 677, 781 |
| BspACI | CCGC | 4 cut(s) | 79, 361, 412, 814 |
| BspANI | GGCC | 1 cut(s) | 95 |
| BspCNI | CTCAG | 1 cut(s) | 169 |
| BspHI | TCATGA | 1 cut(s) | 607 |
| BspLI | GGNNCC | 1 cut(s) | 737 |
| BspPI | GGATC | 3 cut(s) | 602, 672, 776 |
| BspT107I | GGYRCC | 1 cut(s) | 735 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrI | ACTGG | 2 cut(s) | 49, 244 |
| BssECI | CCNNGG | 1 cut(s) | 681 |
| BssMI | GATC | 4 cut(s) | 495, 594, 677, 781 |
| BssNAI | GTATAC | 1 cut(s) | 765 |
| BssNI | GRCGYC | 1 cut(s) | 736 |
| Bst1107I | GTATAC | 1 cut(s) | 765 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstACI | GRCGYC | 1 cut(s) | 736 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 6 cut(s) | 156, 184, 448, 561, 726, 758 |
| BstDSI | CCRYGG | 1 cut(s) | 681 |
| BstEII | GGTNACC | 1 cut(s) | 809 |
| BstF5I | GGATG | 1 cut(s) | 210 |
| BstH2I | RGCGCY | 1 cut(s) | 739 |
| BstHHI | GCGC | 1 cut(s) | 738 |
| BstKTI | GATC | 4 cut(s) | 498, 597, 680, 784 |
| BstMAI | GTCTC | 1 cut(s) | 292 |
| BstMBI | GATC | 4 cut(s) | 495, 594, 677, 781 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 742 |
| BstNSI | RCATGY | 2 cut(s) | 139, 698 |
| BstPI | GGTNACC | 1 cut(s) | 809 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 527 |
| BstX2I | RGATCY | 1 cut(s) | 677 |
| BstYI | RGATCY | 1 cut(s) | 677 |
| BstZ17I | GTATAC | 1 cut(s) | 765 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BtgI | CCRYGG | 1 cut(s) | 681 |
| BtgZI | GCGATG | 1 cut(s) | 521 |
| BtsCI | GGATG | 1 cut(s) | 210 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| CciI | TCATGA | 1 cut(s) | 607 |
| CfoI | GCGC | 1 cut(s) | 738 |
| CviAII | CATG | 4 cut(s) | 136, 608, 644, 695 |
| DdeI | CTNAG | 6 cut(s) | 156, 184, 448, 561, 726, 758 |
| DinI | GGCGCC | 1 cut(s) | 737 |
| DpnI | GATC | 4 cut(s) | 497, 596, 679, 783 |
| DpnII | GATC | 4 cut(s) | 495, 594, 677, 781 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 613 |
| Eco24I | GRGCYC | 1 cut(s) | 615 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 1 cut(s) | 76 |
| Eco53kI | GAGCTC | 1 cut(s) | 613 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| Eco91I | GGTNACC | 1 cut(s) | 809 |
| EcoICRI | GAGCTC | 1 cut(s) | 613 |
| EcoO65I | GGTNACC | 1 cut(s) | 809 |
| EcoRI | GAATTC | 1 cut(s) | 479 |
| EcoRV | GATATC | 1 cut(s) | 76 |
| EcoT38I | GRGCYC | 1 cut(s) | 615 |
| EgeI | GGCGCC | 1 cut(s) | 737 |
| EheI | GGCGCC | 1 cut(s) | 737 |
| FaeI | CATG | 4 cut(s) | 139, 611, 647, 698 |
| FatI | CATG | 4 cut(s) | 135, 607, 643, 694 |
| FblI | GTMKAC | 1 cut(s) | 764 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 1 cut(s) | 197 |
| FriOI | GRGCYC | 1 cut(s) | 615 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 2 cut(s) | 126, 338 |
| GlaI | GCGC | 1 cut(s) | 737 |
| GluI | GCNGC | 1 cut(s) | 180 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeII | RGCGCY | 1 cut(s) | 739 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| HhaI | GCGC | 1 cut(s) | 738 |
| Hin1I | GRCGYC | 1 cut(s) | 736 |
| Hin1II | CATG | 4 cut(s) | 139, 611, 647, 698 |
| Hin6I | GCGC | 1 cut(s) | 736 |
| HinP1I | GCGC | 1 cut(s) | 736 |
| HinfI | GANTC | 7 cut(s) | 102, 115, 236, 320, 371, 523, 704 |
| HphI | GGTGA | 1 cut(s) | 211 |
| Hpy166II | GTNNAC | 1 cut(s) | 765 |
| Hpy188I | TCNGA | 2 cut(s) | 52, 781 |
| Hpy188III | TCNNGA | 9 cut(s) | 71, 119, 131, 383, 437, 608, 675, 701, 771 |
| Hpy8I | GTNNAC | 1 cut(s) | 765 |
| HpyAV | CCTTC | 3 cut(s) | 270, 544, 800 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 2 cut(s) | 312, 387 |
| HpyCH4V | TGCA | 1 cut(s) | 587 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 742 |
| HpyF3I | CTNAG | 6 cut(s) | 156, 184, 448, 561, 726, 758 |
| HpySE526I | ACGT | 2 cut(s) | 312, 387 |
| Hsp92I | GRCGYC | 1 cut(s) | 736 |
| Hsp92II | CATG | 4 cut(s) | 139, 611, 647, 698 |
| HspAI | GCGC | 1 cut(s) | 736 |
| KasI | GGCGCC | 1 cut(s) | 735 |
| Kzo9I | GATC | 4 cut(s) | 495, 594, 677, 781 |
| LmnI | GCTCC | 3 cut(s) | 34, 246, 620 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 2 cut(s) | 94, 493 |
| MaeI | CTAG | 2 cut(s) | 126, 338 |
| MaeII | ACGT | 2 cut(s) | 312, 387 |
| MaeIII | GTNAC | 2 cut(s) | 317, 809 |
| MalI | GATC | 4 cut(s) | 497, 596, 679, 783 |
| MboI | GATC | 4 cut(s) | 495, 594, 677, 781 |
| MboII | GAAGA | 5 cut(s) | 275, 278, 308, 532, 673 |
| MflI | RGATCY | 1 cut(s) | 677 |
| MhlI | GDGCHC | 1 cut(s) | 615 |
| MluCI | AATT | 5 cut(s) | 17, 479, 565, 670, 709 |
| Mly113I | GGCGCC | 1 cut(s) | 736 |
| MlyI | GAGTC | 3 cut(s) | 314, 365, 517 |
| MnlI | CCTC | 5 cut(s) | 181, 368, 419, 725, 733 |
| MroXI | GAANNNNTTC | 2 cut(s) | 456, 696 |
| MseI | TTAA | 4 cut(s) | 111, 465, 473, 582 |
| MslI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 742 |
| NarI | GGCGCC | 1 cut(s) | 736 |
| NdeII | GATC | 4 cut(s) | 495, 594, 677, 781 |
| NlaIII | CATG | 4 cut(s) | 139, 611, 647, 698 |
| NlaIV | GGNNCC | 1 cut(s) | 737 |
| NmuCI | GTSAC | 1 cut(s) | 317 |
| NspI | RCATGY | 2 cut(s) | 139, 698 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 607 |
| PciI | ACATGT | 1 cut(s) | 694 |
| PdmI | GAANNNNTTC | 2 cut(s) | 456, 696 |
| PfeI | GAWTC | 4 cut(s) | 102, 115, 236, 704 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 3 cut(s) | 314, 365, 517 |
| PluTI | GGCGCC | 1 cut(s) | 739 |
| PpsI | GAGTC | 3 cut(s) | 314, 365, 517 |
| PscI | ACATGT | 1 cut(s) | 694 |
| Psp124BI | GAGCTC | 1 cut(s) | 615 |
| PspEI | GGTNACC | 1 cut(s) | 809 |
| PspN4I | GGNNCC | 1 cut(s) | 737 |
| PsuI | RGATCY | 1 cut(s) | 677 |
| RseI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| SacI | GAGCTC | 1 cut(s) | 615 |
| SaqAI | TTAA | 4 cut(s) | 111, 465, 473, 582 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 4 cut(s) | 495, 594, 677, 781 |
| SchI | GAGTC | 3 cut(s) | 314, 365, 517 |
| SduI | GDGCHC | 1 cut(s) | 615 |
| SfaNI | GCATC | 2 cut(s) | 94, 493 |
| SfoI | GGCGCC | 1 cut(s) | 737 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| SmlI | CTYRAG | 2 cut(s) | 89, 119 |
| SmoI | CTYRAG | 2 cut(s) | 89, 119 |
| Sse9I | AATT | 5 cut(s) | 17, 479, 565, 670, 709 |
| SsiI | CCGC | 4 cut(s) | 79, 361, 412, 814 |
| SspDI | GGCGCC | 1 cut(s) | 735 |
| SspMI | CTAG | 2 cut(s) | 126, 338 |
| SstI | GAGCTC | 1 cut(s) | 615 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 2 cut(s) | 315, 390 |
| TaqI | TCGA | 4 cut(s) | 120, 294, 571, 674 |
| TasI | AATT | 5 cut(s) | 17, 479, 565, 670, 709 |
| TfiI | GAWTC | 4 cut(s) | 102, 115, 236, 704 |
| Tru1I | TTAA | 4 cut(s) | 111, 465, 473, 582 |
| Tru9I | TTAA | 4 cut(s) | 111, 465, 473, 582 |
| TseFI | GTSAC | 1 cut(s) | 317 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 1 cut(s) | 317 |
| TspDTI | ATGAA | 4 cut(s) | 272, 276, 596, 641 |
| TspGWI | ACGGA | 3 cut(s) | 305, 607, 670 |
| XapI | RAATTY | 1 cut(s) | 479 |
| XceI | RCATGY | 2 cut(s) | 139, 698 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmiI | GTMKAC | 1 cut(s) | 764 |
| XmnI | GAANNNNTTC | 2 cut(s) | 456, 696 |
| XspI | CTAG | 2 cut(s) | 126, 338 |