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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 79, 361 |
| AclWI | GGATC | 1 cut(s) | 550 |
| AcuI | CTGAAG | 1 cut(s) | 110 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AgsI | TTSAA | 1 cut(s) | 376 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 4 cut(s) | 155, 161, 561, 571 |
| AluI | AGCT | 4 cut(s) | 155, 161, 561, 571 |
| Alw21I | GWGCWC | 1 cut(s) | 563 |
| Alw26I | GTCTC | 2 cut(s) | 292, 496 |
| AlwI | GGATC | 1 cut(s) | 550 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 88 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| BanII | GRGCYC | 1 cut(s) | 563 |
| BbsI | GAAGAC | 3 cut(s) | 98, 273, 476 |
| Bbv12I | GWGCWC | 1 cut(s) | 563 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 4 cut(s) | 92, 215, 342, 496 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BcoDI | GTCTC | 2 cut(s) | 292, 496 |
| BfaI | CTAG | 2 cut(s) | 107, 338 |
| BfmI | CTRYAG | 1 cut(s) | 516 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BpiI | GAAGAC | 3 cut(s) | 98, 273, 476 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 1 cut(s) | 141 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| Bse1I | ACTGG | 1 cut(s) | 244 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseGI | GGATG | 2 cut(s) | 210, 238 |
| BseNI | ACTGG | 1 cut(s) | 244 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BsgI | GTGCAG | 1 cut(s) | 518 |
| BsiHKAI | GWGCWC | 1 cut(s) | 563 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsmAI | GTCTC | 2 cut(s) | 292, 496 |
| BsmBI | CGTCTC | 1 cut(s) | 496 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 1 cut(s) | 563 |
| Bsp143I | GATC | 3 cut(s) | 235, 444, 542 |
| BspACI | CCGC | 2 cut(s) | 79, 361 |
| BspHI | TCATGA | 1 cut(s) | 555 |
| BspPI | GGATC | 1 cut(s) | 550 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrI | ACTGG | 1 cut(s) | 244 |
| BssMI | GATC | 3 cut(s) | 235, 444, 542 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 1 cut(s) | 184 |
| BstF5I | GGATG | 2 cut(s) | 210, 238 |
| BstKTI | GATC | 3 cut(s) | 238, 447, 545 |
| BstMAI | GTCTC | 2 cut(s) | 292, 496 |
| BstMBI | GATC | 3 cut(s) | 235, 444, 542 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstSFI | CTRYAG | 1 cut(s) | 516 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 3 cut(s) | 98, 273, 476 |
| BtgZI | GCGATG | 1 cut(s) | 470 |
| BtsCI | GGATG | 2 cut(s) | 210, 238 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| CaiI | CAGNNNCTG | 1 cut(s) | 88 |
| CciI | TCATGA | 1 cut(s) | 555 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 2 cut(s) | 317, 556 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 1 cut(s) | 184 |
| DpnI | GATC | 3 cut(s) | 237, 446, 544 |
| DpnII | GATC | 3 cut(s) | 235, 444, 542 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 561 |
| Eco24I | GRGCYC | 1 cut(s) | 563 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco53kI | GAGCTC | 1 cut(s) | 561 |
| Eco57I | CTGAAG | 1 cut(s) | 110 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoICRI | GAGCTC | 1 cut(s) | 561 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EcoT38I | GRGCYC | 1 cut(s) | 563 |
| Esp3I | CGTCTC | 1 cut(s) | 496 |
| FaeI | CATG | 2 cut(s) | 320, 559 |
| FaiI | YATR | 9 cut(s) | 228, 230, 257, 318, 354, 433, 518, 557, 574 |
| FatI | CATG | 2 cut(s) | 316, 555 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 2 cut(s) | 197, 245 |
| FriOI | GRGCYC | 1 cut(s) | 563 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 2 cut(s) | 107, 338 |
| GluI | GCNGC | 1 cut(s) | 180 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| Hin1II | CATG | 2 cut(s) | 320, 559 |
| HincII | GTYRAC | 1 cut(s) | 388 |
| HindII | GTYRAC | 1 cut(s) | 388 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 6 cut(s) | 47, 102, 115, 220, 320, 472 |
| Hpy166II | GTNNAC | 1 cut(s) | 388 |
| Hpy188I | TCNGA | 2 cut(s) | 90, 400 |
| Hpy188III | TCNNGA | 5 cut(s) | 51, 71, 119, 332, 556 |
| Hpy8I | GTNNAC | 1 cut(s) | 388 |
| Hpy99I | CGWCG | 1 cut(s) | 542 |
| HpyAV | CCTTC | 2 cut(s) | 270, 493 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4V | TGCA | 3 cut(s) | 497, 509, 535 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| HpyF3I | CTNAG | 1 cut(s) | 184 |
| Hsp92II | CATG | 2 cut(s) | 320, 559 |
| Kzo9I | GATC | 3 cut(s) | 235, 444, 542 |
| LmnI | GCTCC | 3 cut(s) | 34, 246, 568 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 2 cut(s) | 107, 338 |
| MaeIII | GTNAC | 2 cut(s) | 5, 528 |
| MalI | GATC | 3 cut(s) | 237, 446, 544 |
| MboI | GATC | 3 cut(s) | 235, 444, 542 |
| MboII | GAAGA | 5 cut(s) | 103, 275, 278, 308, 481 |
| MhlI | GDGCHC | 1 cut(s) | 563 |
| MluCI | AATT | 3 cut(s) | 17, 428, 521 |
| MlyI | GAGTC | 4 cut(s) | 41, 214, 314, 466 |
| MnlI | CCTC | 4 cut(s) | 127, 181, 368, 497 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MseI | TTAA | 2 cut(s) | 414, 422 |
| MslI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 3 cut(s) | 235, 444, 542 |
| NlaIII | CATG | 2 cut(s) | 320, 559 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 555 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 2 cut(s) | 102, 115 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 4 cut(s) | 41, 214, 314, 466 |
| PpsI | GAGTC | 4 cut(s) | 41, 214, 314, 466 |
| Psp124BI | GAGCTC | 1 cut(s) | 563 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PstNI | CAGNNNCTG | 1 cut(s) | 88 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| SacI | GAGCTC | 1 cut(s) | 563 |
| SaqAI | TTAA | 2 cut(s) | 414, 422 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 3 cut(s) | 235, 444, 542 |
| SchI | GAGTC | 4 cut(s) | 41, 214, 314, 466 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SduI | GDGCHC | 1 cut(s) | 563 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| SfcI | CTRYAG | 1 cut(s) | 516 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| SmlI | CTYRAG | 2 cut(s) | 119, 156 |
| SmoI | CTYRAG | 2 cut(s) | 119, 156 |
| Sse9I | AATT | 3 cut(s) | 17, 428, 521 |
| SsiI | CCGC | 2 cut(s) | 79, 361 |
| SspMI | CTAG | 2 cut(s) | 107, 338 |
| SstI | GAGCTC | 1 cut(s) | 563 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaqI | TCGA | 2 cut(s) | 120, 294 |
| TaqII | GACCGA | 1 cut(s) | 110 |
| TasI | AATT | 3 cut(s) | 17, 428, 521 |
| TfiI | GAWTC | 2 cut(s) | 102, 115 |
| Tru1I | TTAA | 2 cut(s) | 414, 422 |
| Tru9I | TTAA | 2 cut(s) | 414, 422 |
| TseI | GCWGC | 1 cut(s) | 179 |
| TspDTI | ATGAA | 4 cut(s) | 272, 276, 440, 544 |
| TspGWI | ACGGA | 1 cut(s) | 555 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 2 cut(s) | 107, 338 |