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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 776 |
| AclWI | GGATC | 5 cut(s) | 25, 38, 73, 309, 322 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 247, 248, 380 |
| AgsI | TTSAA | 4 cut(s) | 16, 527, 571, 973 |
| AjiI | CACGTC | 1 cut(s) | 733 |
| AjnI | CCWGG | 2 cut(s) | 472, 726 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 885, 917 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 507, 539 |
| AluBI | AGCT | 2 cut(s) | 324, 752 |
| AluI | AGCT | 2 cut(s) | 324, 752 |
| Alw21I | GWGCWC | 1 cut(s) | 397 |
| Alw26I | GTCTC | 4 cut(s) | 44, 364, 448, 889 |
| AlwI | GGATC | 5 cut(s) | 25, 38, 73, 309, 322 |
| Ama87I | CYCGRG | 2 cut(s) | 504, 716 |
| AoxI | GGCC | 2 cut(s) | 643, 777 |
| ApeKI | GCWGC | 3 cut(s) | 143, 324, 403 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1002 |
| AspLEI | GCGC | 1 cut(s) | 94 |
| AspS9I | GGNCC | 2 cut(s) | 470, 644 |
| AsuC2I | CCSGG | 1 cut(s) | 242 |
| AsuHPI | GGTGA | 5 cut(s) | 60, 65, 70, 321, 379 |
| AvaI | CYCGRG | 2 cut(s) | 504, 716 |
| AvaII | GGWCC | 1 cut(s) | 470 |
| BamHI | GGATCC | 2 cut(s) | 30, 314 |
| BbsI | GAAGAC | 1 cut(s) | 870 |
| Bbv12I | GWGCWC | 1 cut(s) | 397 |
| BbvI | GCAGC | 3 cut(s) | 130, 311, 390 |
| BccI | CCATC | 5 cut(s) | 55, 383, 689, 812, 939 |
| BciT130I | CCWGG | 2 cut(s) | 474, 728 |
| BciVI | GTATCC | 1 cut(s) | 700 |
| BcnI | CCSGG | 1 cut(s) | 242 |
| BcoDI | GTCTC | 4 cut(s) | 44, 364, 448, 889 |
| BfaI | CTAG | 3 cut(s) | 557, 723, 935 |
| BfmI | CTRYAG | 1 cut(s) | 19 |
| BfoI | RGCGCY | 1 cut(s) | 95 |
| BfuI | GTATCC | 1 cut(s) | 700 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 89, 785 |
| BisI | GCNGC | 6 cut(s) | 6, 144, 325, 404, 420, 777 |
| BlsI | GCNGC | 6 cut(s) | 7, 145, 326, 405, 421, 778 |
| Bme1390I | CCNGG | 3 cut(s) | 242, 474, 728 |
| Bme18I | GGWCC | 1 cut(s) | 470 |
| BmeT110I | CYCGRG | 2 cut(s) | 504, 716 |
| BmgBI | CACGTC | 1 cut(s) | 733 |
| BmgT120I | GGNCC | 2 cut(s) | 470, 644 |
| BmiI | GGNNCC | 2 cut(s) | 32, 316 |
| BmrFI | CCNGG | 3 cut(s) | 242, 474, 728 |
| BmsI | GCATC | 4 cut(s) | 186, 280, 352, 691 |
| BpiI | GAAGAC | 1 cut(s) | 870 |
| Bpu10I | CCTNAGC | 1 cut(s) | 753 |
| BpuEI | CTTGAG | 1 cut(s) | 671 |
| BpuMI | CCSGG | 1 cut(s) | 242 |
| BsaBI | GATNNNNATC | 1 cut(s) | 803 |
| BsaI | GGTCTC | 3 cut(s) | 364, 448, 889 |
| BsaJI | CCNNGG | 3 cut(s) | 374, 505, 579 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 338, 368 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 247, 248, 380 |
| Bse1I | ACTGG | 1 cut(s) | 646 |
| Bse8I | GATNNNNATC | 1 cut(s) | 803 |
| BseBI | CCWGG | 2 cut(s) | 474, 728 |
| BseDI | CCNNGG | 3 cut(s) | 374, 505, 579 |
| BseGI | GGATG | 6 cut(s) | 177, 295, 367, 603, 807, 835 |
| BseJI | GATNNNNATC | 1 cut(s) | 803 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 247, 248, 380 |
| BseMII | CTCAG | 1 cut(s) | 767 |
| BseNI | ACTGG | 1 cut(s) | 646 |
| BseXI | GCAGC | 3 cut(s) | 130, 311, 390 |
| BshFI | GGCC | 2 cut(s) | 645, 779 |
| BsiHKAI | GWGCWC | 1 cut(s) | 397 |
| BsiHKCI | CYCGRG | 2 cut(s) | 504, 716 |
| BsiSI | CCGG | 1 cut(s) | 242 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 247, 248, 380 |
| BsmAI | GTCTC | 4 cut(s) | 44, 364, 448, 889 |
| BsmBI | CGTCTC | 1 cut(s) | 44 |
| BsnI | GGCC | 2 cut(s) | 645, 779 |
| Bso31I | GGTCTC | 3 cut(s) | 364, 448, 889 |
| BsoBI | CYCGRG | 2 cut(s) | 504, 716 |
| Bsp1286I | GDGCHC | 1 cut(s) | 397 |
| Bsp143I | GATC | 3 cut(s) | 30, 65, 314 |
| BspANI | GGCC | 2 cut(s) | 645, 779 |
| BspCNI | CTCAG | 1 cut(s) | 766 |
| BspLI | GGNNCC | 2 cut(s) | 32, 316 |
| BspPI | GGATC | 5 cut(s) | 25, 38, 73, 309, 322 |
| BspTNI | GGTCTC | 3 cut(s) | 364, 448, 889 |
| BsrBI | CCGCTC | 1 cut(s) | 776 |
| BsrI | ACTGG | 1 cut(s) | 646 |
| BssECI | CCNNGG | 3 cut(s) | 374, 505, 579 |
| BssMI | GATC | 3 cut(s) | 30, 65, 314 |
| BssT1I | CCWWGG | 1 cut(s) | 579 |
| Bst2UI | CCWGG | 2 cut(s) | 474, 728 |
| Bst4CI | ACNGT | 7 cut(s) | 103, 115, 137, 375, 414, 742, 979 |
| BstC8I | GCNNGC | 2 cut(s) | 680, 750 |
| BstDEI | CTNAG | 2 cut(s) | 753, 781 |
| BstDSI | CCRYGG | 1 cut(s) | 374 |
| BstF5I | GGATG | 6 cut(s) | 177, 295, 367, 603, 807, 835 |
| BstH2I | RGCGCY | 1 cut(s) | 95 |
| BstHHI | GCGC | 1 cut(s) | 94 |
| BstKTI | GATC | 3 cut(s) | 33, 68, 317 |
| BstMAI | GTCTC | 4 cut(s) | 44, 364, 448, 889 |
| BstMBI | GATC | 3 cut(s) | 30, 65, 314 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 89, 764, 773, 785, 794 |
| BstNI | CCWGG | 2 cut(s) | 474, 728 |
| BstSCI | CCNGG | 3 cut(s) | 240, 472, 726 |
| BstSFI | CTRYAG | 1 cut(s) | 19 |
| BstV1I | GCAGC | 3 cut(s) | 130, 311, 390 |
| BstV2I | GAAGAC | 1 cut(s) | 870 |
| BstX2I | RGATCY | 2 cut(s) | 30, 314 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 492 |
| BstYI | RGATCY | 2 cut(s) | 30, 314 |
| BsuI | GTATCC | 1 cut(s) | 700 |
| BsuRI | GGCC | 2 cut(s) | 645, 779 |
| BtgI | CCRYGG | 1 cut(s) | 374 |
| BtrI | CACGTC | 1 cut(s) | 733 |
| BtsCI | GGATG | 6 cut(s) | 177, 295, 367, 603, 807, 835 |
| BtsI | GCAGTG | 1 cut(s) | 252 |
| BtsIMutI | CAGTG | 1 cut(s) | 252 |
| Cac8I | GCNNGC | 2 cut(s) | 680, 750 |
| CfoI | GCGC | 1 cut(s) | 94 |
| Cfr13I | GGNCC | 2 cut(s) | 470, 644 |
| CviAII | CATG | 2 cut(s) | 303, 486 |
| DdeI | CTNAG | 2 cut(s) | 753, 781 |
| DpnI | GATC | 3 cut(s) | 32, 67, 316 |
| DpnII | GATC | 3 cut(s) | 30, 65, 314 |
| EciI | GGCGGA | 4 cut(s) | 32, 70, 302, 665 |
| Eco130I | CCWWGG | 1 cut(s) | 579 |
| Eco31I | GGTCTC | 3 cut(s) | 364, 448, 889 |
| Eco32I | GATATC | 1 cut(s) | 673 |
| Eco47I | GGWCC | 1 cut(s) | 470 |
| Eco88I | CYCGRG | 2 cut(s) | 504, 716 |
| EcoRII | CCWGG | 2 cut(s) | 472, 726 |
| EcoRV | GATATC | 1 cut(s) | 673 |
| EcoT14I | CCWWGG | 1 cut(s) | 579 |
| ErhI | CCWWGG | 1 cut(s) | 579 |
| Esp3I | CGTCTC | 1 cut(s) | 44 |
| FaeI | CATG | 2 cut(s) | 306, 489 |
| FatI | CATG | 2 cut(s) | 302, 485 |
| FauI | CCCGC | 1 cut(s) | 399 |
| FauNDI | CATATG | 2 cut(s) | 564, 825 |
| Fnu4HI | GCNGC | 6 cut(s) | 6, 144, 325, 404, 420, 777 |
| FokI | GGATG | 6 cut(s) | 164, 302, 374, 610, 794, 842 |
| Fsp4HI | GCNGC | 6 cut(s) | 6, 144, 325, 404, 420, 777 |
| FspBI | CTAG | 3 cut(s) | 557, 723, 935 |
| GlaI | GCGC | 1 cut(s) | 93 |
| GluI | GCNGC | 6 cut(s) | 6, 144, 325, 404, 420, 777 |
| HaeII | RGCGCY | 1 cut(s) | 95 |
| HaeIII | GGCC | 2 cut(s) | 645, 779 |
| HapII | CCGG | 1 cut(s) | 242 |
| HhaI | GCGC | 1 cut(s) | 94 |
| Hin1II | CATG | 2 cut(s) | 306, 489 |
| Hin6I | GCGC | 1 cut(s) | 92 |
| HinP1I | GCGC | 1 cut(s) | 92 |
| HinfI | GANTC | 5 cut(s) | 699, 712, 817, 833, 917 |
| HpaII | CCGG | 1 cut(s) | 242 |
| HphI | GGTGA | 5 cut(s) | 60, 65, 70, 321, 379 |
| Hpy188I | TCNGA | 1 cut(s) | 997 |
| Hpy99I | CGWCG | 1 cut(s) | 209 |
| HpyAV | CCTTC | 2 cut(s) | 304, 867 |
| HpyCH4III | ACNGT | 7 cut(s) | 103, 115, 137, 375, 414, 742, 979 |
| HpyCH4IV | ACGT | 4 cut(s) | 37, 517, 732, 909 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 89, 764, 773, 785, 794 |
| HpyF3I | CTNAG | 2 cut(s) | 753, 781 |
| HpySE526I | ACGT | 4 cut(s) | 37, 517, 732, 909 |
| Hsp92II | CATG | 2 cut(s) | 306, 489 |
| HspAI | GCGC | 1 cut(s) | 92 |
| Kzo9I | GATC | 3 cut(s) | 30, 65, 314 |
| LmnI | GCTCC | 1 cut(s) | 631 |
| Lsp1109I | GCAGC | 3 cut(s) | 130, 311, 390 |
| LweI | GCATC | 4 cut(s) | 186, 280, 352, 691 |
| MaeI | CTAG | 3 cut(s) | 557, 723, 935 |
| MaeII | ACGT | 4 cut(s) | 37, 517, 732, 909 |
| MaeIII | GTNAC | 4 cut(s) | 97, 109, 170, 914 |
| MalI | GATC | 3 cut(s) | 32, 67, 316 |
| MbiI | CCGCTC | 1 cut(s) | 776 |
| MboI | GATC | 3 cut(s) | 30, 65, 314 |
| MboII | GAAGA | 4 cut(s) | 229, 872, 875, 905 |
| MflI | RGATCY | 2 cut(s) | 30, 314 |
| MhlI | GDGCHC | 1 cut(s) | 397 |
| MluCI | AATT | 3 cut(s) | 117, 228, 614 |
| MlyI | GAGTC | 2 cut(s) | 811, 911 |
| MmeI | TCCRAC | 2 cut(s) | 58, 408 |
| MnlI | CCTC | 8 cut(s) | 49, 88, 203, 340, 500, 506, 778, 965 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1002 |
| MseI | TTAA | 2 cut(s) | 480, 1012 |
| MslI | CAYNNNNRTG | 3 cut(s) | 490, 812, 828 |
| MspI | CCGG | 1 cut(s) | 242 |
| MspR9I | CCNGG | 3 cut(s) | 242, 474, 728 |
| MvaI | CCWGG | 2 cut(s) | 474, 728 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 89, 764, 773, 785, 794 |
| NciI | CCSGG | 1 cut(s) | 242 |
| NdeI | CATATG | 2 cut(s) | 564, 825 |
| NdeII | GATC | 3 cut(s) | 30, 65, 314 |
| NlaIII | CATG | 2 cut(s) | 306, 489 |
| NlaIV | GGNNCC | 2 cut(s) | 32, 316 |
| NmeAIII | GCCGAG | 1 cut(s) | 127 |
| NmuCI | GTSAC | 3 cut(s) | 109, 170, 914 |
| PaeR7I | CTCGAG | 1 cut(s) | 716 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1002 |
| PfeI | GAWTC | 3 cut(s) | 699, 712, 833 |
| PkrI | GCNGC | 6 cut(s) | 7, 145, 326, 405, 421, 778 |
| PleI | GAGTC | 2 cut(s) | 811, 911 |
| PpsI | GAGTC | 2 cut(s) | 811, 911 |
| Psp6I | CCWGG | 2 cut(s) | 472, 726 |
| PspGI | CCWGG | 2 cut(s) | 472, 726 |
| PspN4I | GGNNCC | 2 cut(s) | 32, 316 |
| PspPI | GGNCC | 2 cut(s) | 470, 644 |
| PsuI | RGATCY | 2 cut(s) | 30, 314 |
| RseI | CAYNNNNRTG | 3 cut(s) | 490, 812, 828 |
| SaqAI | TTAA | 2 cut(s) | 480, 1012 |
| SatI | GCNGC | 6 cut(s) | 6, 144, 325, 404, 420, 777 |
| Sau3AI | GATC | 3 cut(s) | 30, 65, 314 |
| Sau96I | GGNCC | 2 cut(s) | 470, 644 |
| SchI | GAGTC | 2 cut(s) | 811, 911 |
| ScrFI | CCNGG | 3 cut(s) | 242, 474, 728 |
| SduI | GDGCHC | 1 cut(s) | 397 |
| SfaNI | GCATC | 4 cut(s) | 186, 280, 352, 691 |
| SfcI | CTRYAG | 1 cut(s) | 19 |
| Sfr274I | CTCGAG | 1 cut(s) | 716 |
| SinI | GGWCC | 1 cut(s) | 470 |
| SlaI | CTCGAG | 1 cut(s) | 716 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 490, 812, 828 |
| SmlI | CTYRAG | 2 cut(s) | 686, 716 |
| SmoI | CTYRAG | 2 cut(s) | 686, 716 |
| Sse9I | AATT | 3 cut(s) | 117, 228, 614 |
| SspMI | CTAG | 3 cut(s) | 557, 723, 935 |
| StyD4I | CCNGG | 3 cut(s) | 240, 472, 726 |
| StyI | CCWWGG | 1 cut(s) | 579 |
| TaaI | ACNGT | 7 cut(s) | 103, 115, 137, 375, 414, 742, 979 |
| TaiI | ACGT | 4 cut(s) | 40, 520, 735, 912 |
| TaqI | TCGA | 3 cut(s) | 549, 717, 891 |
| TasI | AATT | 3 cut(s) | 117, 228, 614 |
| TauI | GCSGC | 3 cut(s) | 8, 422, 779 |
| TfiI | GAWTC | 3 cut(s) | 699, 712, 833 |
| Tru1I | TTAA | 2 cut(s) | 480, 1012 |
| Tru9I | TTAA | 2 cut(s) | 480, 1012 |
| TscAI | CASTG | 1 cut(s) | 252 |
| TseFI | GTSAC | 3 cut(s) | 109, 170, 914 |
| TseI | GCWGC | 3 cut(s) | 143, 324, 403 |
| Tsp45I | GTSAC | 3 cut(s) | 109, 170, 914 |
| TspDTI | ATGAA | 2 cut(s) | 551, 873 |
| TspGWI | ACGGA | 3 cut(s) | 176, 222, 902 |
| TspRI | CASTG | 1 cut(s) | 252 |
| VpaK11BI | GGWCC | 1 cut(s) | 470 |
| XhoI | CTCGAG | 1 cut(s) | 716 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1002 |
| XspI | CTAG | 3 cut(s) | 557, 723, 935 |