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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 121, 542 |
| AclWI | GGATC | 2 cut(s) | 141, 640 |
| AcsI | RAATTY | 1 cut(s) | 560 |
| AcuI | CTGAAG | 1 cut(s) | 432 |
| AcvI | CACGTG | 2 cut(s) | 443, 461 |
| AcyI | GRCGYC | 2 cut(s) | 190, 543 |
| AdeI | CACNNNGTG | 3 cut(s) | 446, 572, 581 |
| AfeI | AGCGCT | 2 cut(s) | 258, 269 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 64, 462, 491 |
| AflIII | ACRYGT | 2 cut(s) | 440, 458 |
| AgsI | TTSAA | 6 cut(s) | 145, 307, 314, 343, 595, 685 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 343 |
| AjnI | CCWGG | 1 cut(s) | 117 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 255, 287 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 125, 157 |
| AluBI | AGCT | 3 cut(s) | 247, 509, 689 |
| AluI | AGCT | 3 cut(s) | 247, 509, 689 |
| Alw21I | GWGCWC | 3 cut(s) | 577, 586, 705 |
| Alw26I | GTCTC | 1 cut(s) | 651 |
| Alw44I | GTGCAC | 3 cut(s) | 573, 582, 701 |
| AlwI | GGATC | 2 cut(s) | 141, 640 |
| Aor51HI | AGCGCT | 2 cut(s) | 258, 269 |
| ApaLI | GTGCAC | 3 cut(s) | 573, 582, 701 |
| ApeKI | GCWGC | 1 cut(s) | 713 |
| ApoI | RAATTY | 1 cut(s) | 560 |
| AspA2I | CCTAGG | 1 cut(s) | 554 |
| AspLEI | GCGC | 4 cut(s) | 259, 270, 524, 545 |
| AsuC2I | CCSGG | 1 cut(s) | 131 |
| AsuHPI | GGTGA | 1 cut(s) | 661 |
| AvrII | CCTAGG | 1 cut(s) | 554 |
| BaeGI | GKGCMC | 3 cut(s) | 577, 586, 705 |
| BanI | GGYRCC | 2 cut(s) | 121, 542 |
| BauI | CACGAG | 1 cut(s) | 510 |
| BbrPI | CACGTG | 2 cut(s) | 443, 461 |
| Bbv12I | GWGCWC | 3 cut(s) | 577, 586, 705 |
| BbvI | GCAGC | 1 cut(s) | 700 |
| BccI | CCATC | 1 cut(s) | 93 |
| BciT130I | CCWGG | 1 cut(s) | 119 |
| BciVI | GTATCC | 1 cut(s) | 430 |
| BcnI | CCSGG | 1 cut(s) | 131 |
| BcoDI | GTCTC | 1 cut(s) | 651 |
| BfaI | CTAG | 3 cut(s) | 15, 260, 555 |
| BfmI | CTRYAG | 1 cut(s) | 714 |
| BfoI | RGCGCY | 4 cut(s) | 260, 271, 525, 546 |
| BfuI | GTATCC | 1 cut(s) | 430 |
| BisI | GCNGC | 1 cut(s) | 714 |
| BlnI | CCTAGG | 1 cut(s) | 554 |
| BlsI | GCNGC | 1 cut(s) | 715 |
| Bme1390I | CCNGG | 2 cut(s) | 119, 131 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 343 |
| BmiI | GGNNCC | 3 cut(s) | 123, 502, 544 |
| BmrFI | CCNGG | 2 cut(s) | 119, 131 |
| BmsI | GCATC | 3 cut(s) | 174, 226, 700 |
| BpuEI | CTTGAG | 1 cut(s) | 153 |
| BpuMI | CCSGG | 1 cut(s) | 131 |
| Bsa29I | ATCGAT | 1 cut(s) | 625 |
| BsaAI | YACGTR | 2 cut(s) | 443, 461 |
| BsaBI | GATNNNNATC | 1 cut(s) | 631 |
| BsaHI | GRCGYC | 2 cut(s) | 190, 543 |
| BsaJI | CCNNGG | 4 cut(s) | 96, 490, 525, 554 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 209, 239, 457, 487 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 64, 462, 491 |
| Bse3DI | GCAATG | 2 cut(s) | 283, 457 |
| Bse8I | GATNNNNATC | 1 cut(s) | 631 |
| BseBI | CCWGG | 1 cut(s) | 119 |
| BseCI | ATCGAT | 1 cut(s) | 625 |
| BseDI | CCNNGG | 4 cut(s) | 96, 490, 525, 554 |
| BseGI | GGATG | 2 cut(s) | 241, 715 |
| BseJI | GATNNNNATC | 1 cut(s) | 631 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 64, 462, 491 |
| BseMI | GCAATG | 2 cut(s) | 283, 457 |
| BseMII | CTCAG | 1 cut(s) | 223 |
| BseRI | GAGGAG | 1 cut(s) | 284 |
| BseSI | GKGCMC | 3 cut(s) | 577, 586, 705 |
| BseXI | GCAGC | 1 cut(s) | 700 |
| BsgI | GTGCAG | 1 cut(s) | 311 |
| BshNI | GGYRCC | 2 cut(s) | 121, 542 |
| BshVI | ATCGAT | 1 cut(s) | 625 |
| BsiHKAI | GWGCWC | 3 cut(s) | 577, 586, 705 |
| BsiSI | CCGG | 1 cut(s) | 131 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 64, 462, 491 |
| BsmAI | GTCTC | 1 cut(s) | 651 |
| BsmBI | CGTCTC | 1 cut(s) | 651 |
| Bsp1286I | GDGCHC | 3 cut(s) | 577, 586, 705 |
| Bsp143I | GATC | 3 cut(s) | 133, 228, 632 |
| Bsp19I | CCATGG | 1 cut(s) | 525 |
| BspCNI | CTCAG | 1 cut(s) | 222 |
| BspDI | ATCGAT | 1 cut(s) | 625 |
| BspLI | GGNNCC | 3 cut(s) | 123, 502, 544 |
| BspMAI | CTGCAG | 1 cut(s) | 718 |
| BspPI | GGATC | 2 cut(s) | 141, 640 |
| BspQI | GCTCTTC | 2 cut(s) | 258, 378 |
| BspT107I | GGYRCC | 2 cut(s) | 121, 542 |
| BsrDI | GCAATG | 2 cut(s) | 283, 457 |
| BssECI | CCNNGG | 4 cut(s) | 96, 490, 525, 554 |
| BssMI | GATC | 3 cut(s) | 133, 228, 632 |
| BssNI | GRCGYC | 2 cut(s) | 190, 543 |
| BssSI | CACGAG | 1 cut(s) | 510 |
| BssT1I | CCWWGG | 3 cut(s) | 96, 525, 554 |
| Bst2BI | CACGAG | 1 cut(s) | 510 |
| Bst2UI | CCWGG | 1 cut(s) | 119 |
| Bst4CI | ACNGT | 1 cut(s) | 62 |
| Bst6I | CTCTTC | 2 cut(s) | 258, 378 |
| BstACI | GRCGYC | 2 cut(s) | 190, 543 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 581 |
| BstBAI | YACGTR | 2 cut(s) | 443, 461 |
| BstC8I | GCNNGC | 1 cut(s) | 165 |
| BstDEI | CTNAG | 1 cut(s) | 209 |
| BstDSI | CCRYGG | 2 cut(s) | 490, 525 |
| BstEII | GGTNACC | 1 cut(s) | 67 |
| BstF5I | GGATG | 2 cut(s) | 241, 715 |
| BstH2I | RGCGCY | 4 cut(s) | 260, 271, 525, 546 |
| BstHHI | GCGC | 4 cut(s) | 259, 270, 524, 545 |
| BstKTI | GATC | 3 cut(s) | 136, 231, 635 |
| BstMAI | GTCTC | 1 cut(s) | 651 |
| BstMBI | GATC | 3 cut(s) | 133, 228, 632 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 265, 581 |
| BstNI | CCWGG | 1 cut(s) | 119 |
| BstNSI | RCATGY | 1 cut(s) | 167 |
| BstPI | GGTNACC | 1 cut(s) | 67 |
| BstSCI | CCNGG | 2 cut(s) | 117, 129 |
| BstSFI | CTRYAG | 1 cut(s) | 714 |
| BstSLI | GKGCMC | 3 cut(s) | 577, 586, 705 |
| BstV1I | GCAGC | 1 cut(s) | 700 |
| BstX2I | RGATCY | 2 cut(s) | 133, 632 |
| BstYI | RGATCY | 2 cut(s) | 133, 632 |
| Bsu15I | ATCGAT | 1 cut(s) | 625 |
| BsuI | GTATCC | 1 cut(s) | 430 |
| BsuTUI | ATCGAT | 1 cut(s) | 625 |
| BtgI | CCRYGG | 2 cut(s) | 490, 525 |
| BtsCI | GGATG | 2 cut(s) | 241, 715 |
| Cac8I | GCNNGC | 1 cut(s) | 165 |
| CfoI | GCGC | 4 cut(s) | 259, 270, 524, 545 |
| ClaI | ATCGAT | 1 cut(s) | 625 |
| CseI | GACGC | 1 cut(s) | 198 |
| CviAII | CATG | 4 cut(s) | 31, 164, 388, 526 |
| CviJI | RGCY | 6 cut(s) | 48, 247, 371, 503, 509, 689 |
| CviKI_1 | RGCY | 6 cut(s) | 48, 247, 371, 503, 509, 689 |
| DdeI | CTNAG | 1 cut(s) | 209 |
| DinI | GGCGCC | 1 cut(s) | 544 |
| DpnI | GATC | 3 cut(s) | 135, 230, 634 |
| DpnII | GATC | 3 cut(s) | 133, 228, 632 |
| DraIII | CACNNNGTG | 3 cut(s) | 446, 572, 581 |
| DriI | GACNNNNNGTC | 1 cut(s) | 343 |
| Eam1104I | CTCTTC | 2 cut(s) | 258, 378 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 343 |
| EarI | CTCTTC | 2 cut(s) | 258, 378 |
| Eco130I | CCWWGG | 3 cut(s) | 96, 525, 554 |
| Eco47III | AGCGCT | 2 cut(s) | 258, 269 |
| Eco57I | CTGAAG | 1 cut(s) | 432 |
| Eco72I | CACGTG | 2 cut(s) | 443, 461 |
| Eco91I | GGTNACC | 1 cut(s) | 67 |
| EcoO65I | GGTNACC | 1 cut(s) | 67 |
| EcoRI | GAATTC | 1 cut(s) | 560 |
| EcoRII | CCWGG | 1 cut(s) | 117 |
| EcoT14I | CCWWGG | 3 cut(s) | 96, 525, 554 |
| EgeI | GGCGCC | 1 cut(s) | 544 |
| EheI | GGCGCC | 1 cut(s) | 544 |
| ErhI | CCWWGG | 3 cut(s) | 96, 525, 554 |
| Esp3I | CGTCTC | 1 cut(s) | 651 |
| FaeI | CATG | 4 cut(s) | 34, 167, 391, 529 |
| FatI | CATG | 4 cut(s) | 30, 163, 387, 525 |
| FauNDI | CATATG | 1 cut(s) | 195 |
| Fnu4HI | GCNGC | 1 cut(s) | 714 |
| FokI | GGATG | 2 cut(s) | 248, 722 |
| Fsp4HI | GCNGC | 1 cut(s) | 714 |
| FspBI | CTAG | 3 cut(s) | 15, 260, 555 |
| GlaI | GCGC | 4 cut(s) | 258, 269, 523, 544 |
| GluI | GCNGC | 1 cut(s) | 714 |
| HaeII | RGCGCY | 4 cut(s) | 260, 271, 525, 546 |
| HapII | CCGG | 1 cut(s) | 131 |
| HgaI | GACGC | 1 cut(s) | 198 |
| HhaI | GCGC | 4 cut(s) | 259, 270, 524, 545 |
| Hin1I | GRCGYC | 2 cut(s) | 190, 543 |
| Hin1II | CATG | 4 cut(s) | 34, 167, 391, 529 |
| Hin6I | GCGC | 4 cut(s) | 257, 268, 522, 543 |
| HinP1I | GCGC | 4 cut(s) | 257, 268, 522, 543 |
| HinfI | GANTC | 4 cut(s) | 18, 38, 287, 396 |
| HpaII | CCGG | 1 cut(s) | 131 |
| HphI | GGTGA | 1 cut(s) | 661 |
| Hpy166II | GTNNAC | 4 cut(s) | 404, 575, 584, 703 |
| Hpy188I | TCNGA | 3 cut(s) | 52, 212, 367 |
| Hpy188III | TCNNGA | 1 cut(s) | 181 |
| Hpy8I | GTNNAC | 4 cut(s) | 404, 575, 584, 703 |
| Hpy99I | CGWCG | 2 cut(s) | 26, 192 |
| HpyAV | CCTTC | 3 cut(s) | 301, 407, 589 |
| HpyCH4III | ACNGT | 1 cut(s) | 62 |
| HpyCH4IV | ACGT | 4 cut(s) | 24, 442, 460, 660 |
| HpyCH4V | TGCA | 7 cut(s) | 239, 328, 423, 575, 584, 703, 716 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 265, 581 |
| HpyF3I | CTNAG | 1 cut(s) | 209 |
| HpySE526I | ACGT | 4 cut(s) | 24, 442, 460, 660 |
| Hsp92I | GRCGYC | 2 cut(s) | 190, 543 |
| Hsp92II | CATG | 4 cut(s) | 34, 167, 391, 529 |
| HspAI | GCGC | 4 cut(s) | 257, 268, 522, 543 |
| KasI | GGCGCC | 1 cut(s) | 542 |
| Kzo9I | GATC | 3 cut(s) | 133, 228, 632 |
| LguI | GCTCTTC | 2 cut(s) | 258, 378 |
| LmnI | GCTCC | 1 cut(s) | 500 |
| LpnPI | CCDG | 6 cut(s) | 30, 104, 131, 144, 312, 423 |
| Lsp1109I | GCAGC | 1 cut(s) | 700 |
| LweI | GCATC | 3 cut(s) | 174, 226, 700 |
| MaeI | CTAG | 3 cut(s) | 15, 260, 555 |
| MaeII | ACGT | 4 cut(s) | 24, 442, 460, 660 |
| MaeIII | GTNAC | 1 cut(s) | 67 |
| MalI | GATC | 3 cut(s) | 135, 230, 634 |
| MboI | GATC | 3 cut(s) | 133, 228, 632 |
| MboII | GAAGA | 4 cut(s) | 275, 365, 653, 656 |
| MfeI | CAATTG | 1 cut(s) | 590 |
| MflI | RGATCY | 2 cut(s) | 133, 632 |
| MhlI | GDGCHC | 3 cut(s) | 577, 586, 705 |
| MluCI | AATT | 4 cut(s) | 361, 560, 590, 610 |
| Mly113I | GGCGCC | 1 cut(s) | 543 |
| MlyI | GAGTC | 2 cut(s) | 12, 32 |
| MseI | TTAA | 1 cut(s) | 663 |
| MslI | CAYNNNNRTG | 2 cut(s) | 627, 708 |
| MspI | CCGG | 1 cut(s) | 131 |
| MspR9I | CCNGG | 2 cut(s) | 119, 131 |
| MunI | CAATTG | 1 cut(s) | 590 |
| MvaI | CCWGG | 1 cut(s) | 119 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 265, 581 |
| NarI | GGCGCC | 1 cut(s) | 543 |
| NciI | CCSGG | 1 cut(s) | 131 |
| NcoI | CCATGG | 1 cut(s) | 525 |
| NdeI | CATATG | 1 cut(s) | 195 |
| NdeII | GATC | 3 cut(s) | 133, 228, 632 |
| NlaIII | CATG | 4 cut(s) | 34, 167, 391, 529 |
| NlaIV | GGNNCC | 3 cut(s) | 123, 502, 544 |
| NspI | RCATGY | 1 cut(s) | 167 |
| PaeI | GCATGC | 1 cut(s) | 167 |
| PciSI | GCTCTTC | 2 cut(s) | 258, 378 |
| PfeI | GAWTC | 2 cut(s) | 287, 396 |
| PkrI | GCNGC | 1 cut(s) | 715 |
| PleI | GAGTC | 2 cut(s) | 12, 32 |
| PluTI | GGCGCC | 1 cut(s) | 546 |
| PmaCI | CACGTG | 2 cut(s) | 443, 461 |
| PmlI | CACGTG | 2 cut(s) | 443, 461 |
| PpsI | GAGTC | 2 cut(s) | 12, 32 |
| Ppu21I | YACGTR | 2 cut(s) | 443, 461 |
| Psp6I | CCWGG | 1 cut(s) | 117 |
| PspCI | CACGTG | 2 cut(s) | 443, 461 |
| PspEI | GGTNACC | 1 cut(s) | 67 |
| PspGI | CCWGG | 1 cut(s) | 117 |
| PspN4I | GGNNCC | 3 cut(s) | 123, 502, 544 |
| PstI | CTGCAG | 1 cut(s) | 718 |
| PsuI | RGATCY | 2 cut(s) | 133, 632 |
| RseI | CAYNNNNRTG | 2 cut(s) | 627, 708 |
| SapI | GCTCTTC | 2 cut(s) | 258, 378 |
| SaqAI | TTAA | 1 cut(s) | 663 |
| SatI | GCNGC | 1 cut(s) | 714 |
| Sau3AI | GATC | 3 cut(s) | 133, 228, 632 |
| SchI | GAGTC | 2 cut(s) | 12, 32 |
| ScrFI | CCNGG | 2 cut(s) | 119, 131 |
| SduI | GDGCHC | 3 cut(s) | 577, 586, 705 |
| SfaNI | GCATC | 3 cut(s) | 174, 226, 700 |
| SfcI | CTRYAG | 1 cut(s) | 714 |
| SfoI | GGCGCC | 1 cut(s) | 544 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 627, 708 |
| SmlI | CTYRAG | 1 cut(s) | 168 |
| SmoI | CTYRAG | 1 cut(s) | 168 |
| SphI | GCATGC | 1 cut(s) | 167 |
| Sse9I | AATT | 4 cut(s) | 361, 560, 590, 610 |
| SspDI | GGCGCC | 1 cut(s) | 542 |
| SspI | AATATT | 1 cut(s) | 105 |
| SspMI | CTAG | 3 cut(s) | 15, 260, 555 |
| StyD4I | CCNGG | 2 cut(s) | 117, 129 |
| StyI | CCWWGG | 3 cut(s) | 96, 525, 554 |
| TaaI | ACNGT | 1 cut(s) | 62 |
| TaiI | ACGT | 4 cut(s) | 27, 445, 463, 663 |
| TaqI | TCGA | 4 cut(s) | 5, 21, 227, 625 |
| TasI | AATT | 4 cut(s) | 361, 560, 590, 610 |
| TfiI | GAWTC | 2 cut(s) | 287, 396 |
| Tru1I | TTAA | 1 cut(s) | 663 |
| Tru9I | TTAA | 1 cut(s) | 663 |
| TseI | GCWGC | 1 cut(s) | 713 |
| TspDTI | ATGAA | 2 cut(s) | 24, 711 |
| TspGWI | ACGGA | 1 cut(s) | 479 |
| VneI | GTGCAC | 3 cut(s) | 573, 582, 701 |
| XapI | RAATTY | 1 cut(s) | 560 |
| XceI | RCATGY | 1 cut(s) | 167 |
| XmaJI | CCTAGG | 1 cut(s) | 554 |
| XspI | CTAG | 3 cut(s) | 15, 260, 555 |