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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 561 |
| AciI | CCGC | 2 cut(s) | 256, 655 |
| AclWI | GGATC | 2 cut(s) | 446, 513 |
| AcsI | RAATTY | 1 cut(s) | 323 |
| AfaI | GTAC | 1 cut(s) | 143 |
| AgsI | TTSAA | 2 cut(s) | 271, 550 |
| AjnI | CCWGG | 1 cut(s) | 24 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 183, 215 |
| AluBI | AGCT | 4 cut(s) | 34, 50, 454, 464 |
| AluI | AGCT | 4 cut(s) | 34, 50, 454, 464 |
| Alw26I | GTCTC | 2 cut(s) | 187, 391 |
| AlwI | GGATC | 2 cut(s) | 446, 513 |
| Ama87I | CYCGRG | 1 cut(s) | 14 |
| ApeKI | GCWGC | 1 cut(s) | 74 |
| ApoI | RAATTY | 1 cut(s) | 323 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 300 |
| AspLEI | GCGC | 1 cut(s) | 563 |
| AspS9I | GGNCC | 1 cut(s) | 623 |
| AvaI | CYCGRG | 1 cut(s) | 14 |
| AvaII | GGWCC | 1 cut(s) | 623 |
| BbsI | GAAGAC | 2 cut(s) | 168, 371 |
| BbvI | GCAGC | 1 cut(s) | 86 |
| BccI | CCATC | 1 cut(s) | 237 |
| BciT130I | CCWGG | 1 cut(s) | 26 |
| BciVI | GTATCC | 1 cut(s) | 598 |
| BcoDI | GTCTC | 2 cut(s) | 187, 391 |
| BfaI | CTAG | 2 cut(s) | 168, 233 |
| BfmI | CTRYAG | 1 cut(s) | 429 |
| BfuI | GTATCC | 1 cut(s) | 598 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 83 |
| BisI | GCNGC | 1 cut(s) | 75 |
| BlsI | GCNGC | 1 cut(s) | 76 |
| Bme1390I | CCNGG | 1 cut(s) | 26 |
| Bme18I | GGWCC | 1 cut(s) | 623 |
| BmeT110I | CYCGRG | 1 cut(s) | 14 |
| BmgT120I | GGNCC | 1 cut(s) | 623 |
| BmiI | GGNNCC | 2 cut(s) | 402, 578 |
| BmrFI | CCNGG | 1 cut(s) | 26 |
| BpiI | GAAGAC | 2 cut(s) | 168, 371 |
| BpmI | CTGGAG | 1 cut(s) | 122 |
| BpuEI | CTTGAG | 1 cut(s) | 36 |
| BsaI | GGTCTC | 1 cut(s) | 187 |
| BsaJI | CCNNGG | 1 cut(s) | 522 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 358, 388 |
| Bse1I | ACTGG | 1 cut(s) | 139 |
| BseBI | CCWGG | 1 cut(s) | 26 |
| BseDI | CCNNGG | 1 cut(s) | 522 |
| BseGI | GGATG | 5 cut(s) | 34, 105, 133, 492, 620 |
| BseNI | ACTGG | 1 cut(s) | 139 |
| BseXI | GCAGC | 1 cut(s) | 86 |
| Bsh1236I | CGCG | 1 cut(s) | 561 |
| BsiHKCI | CYCGRG | 1 cut(s) | 14 |
| BsmAI | GTCTC | 2 cut(s) | 187, 391 |
| Bso31I | GGTCTC | 1 cut(s) | 187 |
| BsoBI | CYCGRG | 1 cut(s) | 14 |
| Bsp143I | GATC | 3 cut(s) | 339, 438, 518 |
| BspACI | CCGC | 2 cut(s) | 256, 655 |
| BspFNI | CGCG | 1 cut(s) | 561 |
| BspLI | GGNNCC | 2 cut(s) | 402, 578 |
| BspMAI | CTGCAG | 1 cut(s) | 433 |
| BspPI | GGATC | 2 cut(s) | 446, 513 |
| BspTNI | GGTCTC | 1 cut(s) | 187 |
| BsrI | ACTGG | 1 cut(s) | 139 |
| BssECI | CCNNGG | 1 cut(s) | 522 |
| BssMI | GATC | 3 cut(s) | 339, 438, 518 |
| Bst2UI | CCWGG | 1 cut(s) | 26 |
| Bst4CI | ACNGT | 1 cut(s) | 40 |
| BstC8I | GCNNGC | 1 cut(s) | 48 |
| BstDEI | CTNAG | 3 cut(s) | 79, 405, 599 |
| BstDSI | CCRYGG | 1 cut(s) | 522 |
| BstF5I | GGATG | 5 cut(s) | 34, 105, 133, 492, 620 |
| BstFNI | CGCG | 1 cut(s) | 561 |
| BstHHI | GCGC | 1 cut(s) | 563 |
| BstKTI | GATC | 3 cut(s) | 342, 441, 521 |
| BstMAI | GTCTC | 2 cut(s) | 187, 391 |
| BstMBI | GATC | 3 cut(s) | 339, 438, 518 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 71, 83, 92 |
| BstNI | CCWGG | 1 cut(s) | 26 |
| BstSCI | CCNGG | 1 cut(s) | 24 |
| BstSFI | CTRYAG | 1 cut(s) | 429 |
| BstUI | CGCG | 1 cut(s) | 561 |
| BstV1I | GCAGC | 1 cut(s) | 86 |
| BstV2I | GAAGAC | 2 cut(s) | 168, 371 |
| BstX2I | RGATCY | 1 cut(s) | 518 |
| BstYI | RGATCY | 1 cut(s) | 518 |
| BsuI | GTATCC | 1 cut(s) | 598 |
| BtgI | CCRYGG | 1 cut(s) | 522 |
| BtgZI | GCGATG | 1 cut(s) | 365 |
| BtsCI | GGATG | 5 cut(s) | 34, 105, 133, 492, 620 |
| Cac8I | GCNNGC | 1 cut(s) | 48 |
| CfoI | GCGC | 1 cut(s) | 563 |
| Cfr13I | GGNCC | 1 cut(s) | 623 |
| Csp6I | GTAC | 1 cut(s) | 142 |
| CviAII | CATG | 1 cut(s) | 485 |
| CviJI | RGCY | 8 cut(s) | 19, 34, 50, 77, 175, 252, 454, 464 |
| CviKI_1 | RGCY | 8 cut(s) | 19, 34, 50, 77, 175, 252, 454, 464 |
| CviQI | GTAC | 1 cut(s) | 142 |
| DdeI | CTNAG | 3 cut(s) | 79, 405, 599 |
| DpnI | GATC | 3 cut(s) | 341, 440, 520 |
| DpnII | GATC | 3 cut(s) | 339, 438, 518 |
| Eco31I | GGTCTC | 1 cut(s) | 187 |
| Eco47I | GGWCC | 1 cut(s) | 623 |
| Eco88I | CYCGRG | 1 cut(s) | 14 |
| EcoRI | GAATTC | 1 cut(s) | 323 |
| EcoRII | CCWGG | 1 cut(s) | 24 |
| FaeI | CATG | 1 cut(s) | 488 |
| FatI | CATG | 1 cut(s) | 484 |
| FauNDI | CATATG | 2 cut(s) | 123, 346 |
| Fnu4HI | GCNGC | 1 cut(s) | 75 |
| FokI | GGATG | 5 cut(s) | 41, 92, 140, 479, 627 |
| Fsp4HI | GCNGC | 1 cut(s) | 75 |
| FspBI | CTAG | 2 cut(s) | 168, 233 |
| GlaI | GCGC | 1 cut(s) | 562 |
| GluI | GCNGC | 1 cut(s) | 75 |
| GsuI | CTGGAG | 1 cut(s) | 122 |
| HhaI | GCGC | 1 cut(s) | 563 |
| Hin1II | CATG | 1 cut(s) | 488 |
| Hin6I | GCGC | 1 cut(s) | 561 |
| HinP1I | GCGC | 1 cut(s) | 561 |
| HinfI | GANTC | 7 cut(s) | 5, 10, 115, 131, 215, 367, 417 |
| Hpy188I | TCNGA | 1 cut(s) | 295 |
| Hpy188III | TCNNGA | 6 cut(s) | 14, 227, 281, 516, 542, 612 |
| HpyAV | CCTTC | 4 cut(s) | 148, 165, 388, 567 |
| HpyCH4III | ACNGT | 1 cut(s) | 40 |
| HpyCH4IV | ACGT | 1 cut(s) | 207 |
| HpyCH4V | TGCA | 1 cut(s) | 431 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 71, 83, 92 |
| HpyF3I | CTNAG | 3 cut(s) | 79, 405, 599 |
| HpySE526I | ACGT | 1 cut(s) | 207 |
| Hsp92II | CATG | 1 cut(s) | 488 |
| HspAI | GCGC | 1 cut(s) | 561 |
| Kzo9I | GATC | 3 cut(s) | 339, 438, 518 |
| LmnI | GCTCC | 2 cut(s) | 141, 461 |
| LpnPI | CCDG | 7 cut(s) | 11, 38, 152, 233, 240, 417, 597 |
| Lsp1109I | GCAGC | 1 cut(s) | 86 |
| MaeI | CTAG | 2 cut(s) | 168, 233 |
| MaeII | ACGT | 1 cut(s) | 207 |
| MaeIII | GTNAC | 2 cut(s) | 424, 650 |
| MalI | GATC | 3 cut(s) | 341, 440, 520 |
| MboI | GATC | 3 cut(s) | 339, 438, 518 |
| MboII | GAAGA | 5 cut(s) | 170, 173, 203, 376, 514 |
| MflI | RGATCY | 1 cut(s) | 518 |
| MluCI | AATT | 3 cut(s) | 323, 511, 550 |
| MlyI | GAGTC | 2 cut(s) | 109, 361 |
| MnlI | CCTC | 3 cut(s) | 76, 263, 574 |
| MroXI | GAANNNNTTC | 1 cut(s) | 300 |
| MseI | TTAA | 2 cut(s) | 309, 317 |
| MslI | CAYNNNNRTG | 2 cut(s) | 126, 497 |
| MspR9I | CCNGG | 1 cut(s) | 26 |
| MvaI | CCWGG | 1 cut(s) | 26 |
| MvnI | CGCG | 1 cut(s) | 561 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 71, 83, 92 |
| NdeI | CATATG | 2 cut(s) | 123, 346 |
| NdeII | GATC | 3 cut(s) | 339, 438, 518 |
| NlaIII | CATG | 1 cut(s) | 488 |
| NlaIV | GGNNCC | 2 cut(s) | 402, 578 |
| PaeR7I | CTCGAG | 1 cut(s) | 14 |
| PdmI | GAANNNNTTC | 1 cut(s) | 300 |
| PfeI | GAWTC | 5 cut(s) | 5, 10, 131, 215, 417 |
| PkrI | GCNGC | 1 cut(s) | 76 |
| PleI | GAGTC | 2 cut(s) | 109, 361 |
| PpsI | GAGTC | 2 cut(s) | 109, 361 |
| Psp6I | CCWGG | 1 cut(s) | 24 |
| PspGI | CCWGG | 1 cut(s) | 24 |
| PspN4I | GGNNCC | 2 cut(s) | 402, 578 |
| PspPI | GGNCC | 1 cut(s) | 623 |
| PstI | CTGCAG | 1 cut(s) | 433 |
| PsuI | RGATCY | 1 cut(s) | 518 |
| RsaI | GTAC | 1 cut(s) | 143 |
| RsaNI | GTAC | 1 cut(s) | 142 |
| RseI | CAYNNNNRTG | 2 cut(s) | 126, 497 |
| SaqAI | TTAA | 2 cut(s) | 309, 317 |
| SatI | GCNGC | 1 cut(s) | 75 |
| Sau3AI | GATC | 3 cut(s) | 339, 438, 518 |
| Sau96I | GGNCC | 1 cut(s) | 623 |
| SchI | GAGTC | 2 cut(s) | 109, 361 |
| ScrFI | CCNGG | 1 cut(s) | 26 |
| SetI | ASST | 9 cut(s) | 36, 52, 58, 210, 234, 449, 456, 466, 668 |
| SfcI | CTRYAG | 1 cut(s) | 429 |
| Sfr274I | CTCGAG | 1 cut(s) | 14 |
| SinI | GGWCC | 1 cut(s) | 623 |
| SlaI | CTCGAG | 1 cut(s) | 14 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 126, 497 |
| SmlI | CTYRAG | 2 cut(s) | 14, 51 |
| SmoI | CTYRAG | 2 cut(s) | 14, 51 |
| Sse9I | AATT | 3 cut(s) | 323, 511, 550 |
| SsiI | CCGC | 2 cut(s) | 256, 655 |
| SspMI | CTAG | 2 cut(s) | 168, 233 |
| StyD4I | CCNGG | 1 cut(s) | 24 |
| TaaI | ACNGT | 1 cut(s) | 40 |
| TaiI | ACGT | 1 cut(s) | 210 |
| TaqI | TCGA | 5 cut(s) | 8, 15, 189, 415, 515 |
| TasI | AATT | 3 cut(s) | 323, 511, 550 |
| TfiI | GAWTC | 5 cut(s) | 5, 10, 131, 215, 417 |
| Tru1I | TTAA | 2 cut(s) | 309, 317 |
| Tru9I | TTAA | 2 cut(s) | 309, 317 |
| TseI | GCWGC | 1 cut(s) | 74 |
| TspDTI | ATGAA | 2 cut(s) | 167, 482 |
| TspGWI | ACGGA | 3 cut(s) | 200, 451, 511 |
| VpaK11BI | GGWCC | 1 cut(s) | 623 |
| XapI | RAATTY | 1 cut(s) | 323 |
| XhoI | CTCGAG | 1 cut(s) | 14 |
| XmnI | GAANNNNTTC | 1 cut(s) | 300 |
| XspI | CTAG | 2 cut(s) | 168, 233 |