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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 729 |
| AccB1I | GGYRCC | 2 cut(s) | 842, 863 |
| AccII | CGCG | 1 cut(s) | 669 |
| AciI | CCGC | 3 cut(s) | 79, 361, 763 |
| AclI | AACGTT | 1 cut(s) | 312 |
| AclWI | GGATC | 1 cut(s) | 621 |
| AcoI | YGGCCR | 2 cut(s) | 829, 850 |
| AcyI | GRCGYC | 2 cut(s) | 843, 864 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AgsI | TTSAA | 2 cut(s) | 376, 901 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AleI | CACNNNNGTG | 1 cut(s) | 452 |
| AluBI | AGCT | 5 cut(s) | 48, 155, 161, 572, 744 |
| AluI | AGCT | 5 cut(s) | 48, 155, 161, 572, 744 |
| Alw26I | GTCTC | 2 cut(s) | 292, 496 |
| AlwI | GGATC | 1 cut(s) | 621 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 3 cut(s) | 93, 829, 850 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AspLEI | GCGC | 3 cut(s) | 671, 845, 866 |
| AspS9I | GGNCC | 1 cut(s) | 731 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AvaII | GGWCC | 1 cut(s) | 731 |
| BanI | GGYRCC | 2 cut(s) | 842, 863 |
| BbsI | GAAGAC | 2 cut(s) | 273, 476 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 5 cut(s) | 92, 215, 342, 496, 891 |
| BciVI | GTATCC | 2 cut(s) | 103, 706 |
| BclI | TGATCA | 1 cut(s) | 961 |
| BcoDI | GTCTC | 2 cut(s) | 292, 496 |
| BfaI | CTAG | 3 cut(s) | 45, 126, 338 |
| BfoI | RGCGCY | 2 cut(s) | 846, 867 |
| BfuI | GTATCC | 2 cut(s) | 103, 706 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme18I | GGWCC | 1 cut(s) | 731 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 1 cut(s) | 731 |
| BmiI | GGNNCC | 3 cut(s) | 785, 844, 865 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BpiI | GAAGAC | 2 cut(s) | 273, 476 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| BsaHI | GRCGYC | 2 cut(s) | 843, 864 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| BsaJI | CCNNGG | 1 cut(s) | 630 |
| Bse1I | ACTGG | 1 cut(s) | 244 |
| BseDI | CCNNGG | 1 cut(s) | 630 |
| BseGI | GGATG | 3 cut(s) | 210, 238, 600 |
| BseNI | ACTGG | 1 cut(s) | 244 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| Bsh1236I | CGCG | 1 cut(s) | 669 |
| BshFI | GGCC | 3 cut(s) | 95, 831, 852 |
| BshNI | GGYRCC | 2 cut(s) | 842, 863 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsiSI | CCGG | 2 cut(s) | 828, 849 |
| BsmAI | GTCTC | 2 cut(s) | 292, 496 |
| BsmBI | CGTCTC | 1 cut(s) | 496 |
| BsmI | GAATGC | 1 cut(s) | 428 |
| BsnI | GGCC | 3 cut(s) | 95, 831, 852 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp143I | GATC | 3 cut(s) | 444, 626, 961 |
| BspACI | CCGC | 3 cut(s) | 79, 361, 763 |
| BspANI | GGCC | 3 cut(s) | 95, 831, 852 |
| BspFNI | CGCG | 1 cut(s) | 669 |
| BspHI | TCATGA | 1 cut(s) | 556 |
| BspLI | GGNNCC | 3 cut(s) | 785, 844, 865 |
| BspPI | GGATC | 1 cut(s) | 621 |
| BspT107I | GGYRCC | 2 cut(s) | 842, 863 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrI | ACTGG | 1 cut(s) | 244 |
| BssECI | CCNNGG | 1 cut(s) | 630 |
| BssMI | GATC | 3 cut(s) | 444, 626, 961 |
| BssNI | GRCGYC | 2 cut(s) | 843, 864 |
| BssT1I | CCWWGG | 1 cut(s) | 630 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| Bst6I | CTCTTC | 1 cut(s) | 784 |
| BstACI | GRCGYC | 2 cut(s) | 843, 864 |
| BstC8I | GCNNGC | 3 cut(s) | 83, 153, 777 |
| BstDEI | CTNAG | 5 cut(s) | 184, 510, 675, 707, 876 |
| BstEII | GGTNACC | 1 cut(s) | 758 |
| BstF5I | GGATG | 3 cut(s) | 210, 238, 600 |
| BstFNI | CGCG | 1 cut(s) | 669 |
| BstH2I | RGCGCY | 2 cut(s) | 846, 867 |
| BstHHI | GCGC | 3 cut(s) | 671, 845, 866 |
| BstKTI | GATC | 3 cut(s) | 447, 629, 964 |
| BstMAI | GTCTC | 2 cut(s) | 292, 496 |
| BstMBI | GATC | 3 cut(s) | 444, 626, 961 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 188, 197, 849 |
| BstPI | GGTNACC | 1 cut(s) | 758 |
| BstUI | CGCG | 1 cut(s) | 669 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 476 |
| BstX2I | RGATCY | 1 cut(s) | 626 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 839, 860 |
| BstYI | RGATCY | 1 cut(s) | 626 |
| BsuI | GTATCC | 2 cut(s) | 103, 706 |
| BsuRI | GGCC | 3 cut(s) | 95, 831, 852 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 3 cut(s) | 210, 238, 600 |
| Cac8I | GCNNGC | 3 cut(s) | 83, 153, 777 |
| CciI | TCATGA | 1 cut(s) | 556 |
| CfoI | GCGC | 3 cut(s) | 671, 845, 866 |
| Cfr13I | GGNCC | 1 cut(s) | 731 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 6 cut(s) | 557, 593, 639, 780, 833, 854 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 5 cut(s) | 184, 510, 675, 707, 876 |
| DinI | GGCGCC | 2 cut(s) | 844, 865 |
| DpnI | GATC | 3 cut(s) | 446, 628, 963 |
| DpnII | GATC | 3 cut(s) | 444, 626, 961 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 729 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 729 |
| EaeI | YGGCCR | 2 cut(s) | 829, 850 |
| Eam1104I | CTCTTC | 1 cut(s) | 784 |
| EarI | CTCTTC | 1 cut(s) | 784 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Eco130I | CCWWGG | 1 cut(s) | 630 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 1 cut(s) | 76 |
| Eco47I | GGWCC | 1 cut(s) | 731 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| Eco91I | GGTNACC | 1 cut(s) | 758 |
| EcoO65I | GGTNACC | 1 cut(s) | 758 |
| EcoRV | GATATC | 1 cut(s) | 76 |
| EcoT14I | CCWWGG | 1 cut(s) | 630 |
| EgeI | GGCGCC | 2 cut(s) | 844, 865 |
| EheI | GGCGCC | 2 cut(s) | 844, 865 |
| ErhI | CCWWGG | 1 cut(s) | 630 |
| Esp3I | CGTCTC | 1 cut(s) | 496 |
| FaeI | CATG | 6 cut(s) | 560, 596, 642, 783, 836, 857 |
| FatI | CATG | 6 cut(s) | 556, 592, 638, 779, 832, 853 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| FbaI | TGATCA | 1 cut(s) | 961 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 3 cut(s) | 197, 245, 587 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 3 cut(s) | 45, 126, 338 |
| GlaI | GCGC | 3 cut(s) | 670, 844, 865 |
| GluI | GCNGC | 1 cut(s) | 180 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeII | RGCGCY | 2 cut(s) | 846, 867 |
| HaeIII | GGCC | 3 cut(s) | 95, 831, 852 |
| HapII | CCGG | 2 cut(s) | 828, 849 |
| HhaI | GCGC | 3 cut(s) | 671, 845, 866 |
| Hin1I | GRCGYC | 2 cut(s) | 843, 864 |
| Hin1II | CATG | 6 cut(s) | 560, 596, 642, 783, 836, 857 |
| Hin6I | GCGC | 3 cut(s) | 669, 843, 864 |
| HinP1I | GCGC | 3 cut(s) | 669, 843, 864 |
| HincII | GTYRAC | 1 cut(s) | 797 |
| HindII | GTYRAC | 1 cut(s) | 797 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 8 cut(s) | 102, 115, 220, 236, 472, 522, 543, 893 |
| HpaII | CCGG | 2 cut(s) | 828, 849 |
| Hpy166II | GTNNAC | 1 cut(s) | 797 |
| Hpy188I | TCNGA | 4 cut(s) | 52, 400, 651, 961 |
| Hpy188III | TCNNGA | 8 cut(s) | 71, 119, 332, 386, 557, 624, 720, 945 |
| Hpy8I | GTNNAC | 1 cut(s) | 797 |
| HpyAV | CCTTC | 1 cut(s) | 749 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 4 cut(s) | 135, 312, 724, 799 |
| HpyCH4V | TGCA | 1 cut(s) | 497 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 188, 197, 849 |
| HpyF3I | CTNAG | 5 cut(s) | 184, 510, 675, 707, 876 |
| HpySE526I | ACGT | 4 cut(s) | 135, 312, 724, 799 |
| Hsp92I | GRCGYC | 2 cut(s) | 843, 864 |
| Hsp92II | CATG | 6 cut(s) | 560, 596, 642, 783, 836, 857 |
| HspAI | GCGC | 3 cut(s) | 669, 843, 864 |
| KasI | GGCGCC | 2 cut(s) | 842, 863 |
| Ksp22I | TGATCA | 1 cut(s) | 961 |
| Kzo9I | GATC | 3 cut(s) | 444, 626, 961 |
| LmnI | GCTCC | 3 cut(s) | 34, 246, 569 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 3 cut(s) | 45, 126, 338 |
| MaeII | ACGT | 4 cut(s) | 135, 312, 724, 799 |
| MaeIII | GTNAC | 5 cut(s) | 5, 317, 505, 529, 758 |
| MalI | GATC | 3 cut(s) | 446, 628, 963 |
| MboI | GATC | 3 cut(s) | 444, 626, 961 |
| MboII | GAAGA | 6 cut(s) | 275, 278, 308, 481, 622, 801 |
| MflI | RGATCY | 1 cut(s) | 626 |
| MluCI | AATT | 3 cut(s) | 17, 619, 658 |
| Mly113I | GGCGCC | 2 cut(s) | 843, 864 |
| MlyI | GAGTC | 3 cut(s) | 214, 466, 887 |
| MnlI | CCTC | 8 cut(s) | 181, 368, 785, 805, 809, 835, 856, 918 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MseI | TTAA | 2 cut(s) | 414, 422 |
| MslI | CAYNNNNRTG | 7 cut(s) | 215, 231, 452, 605, 837, 858, 888 |
| MspI | CCGG | 2 cut(s) | 828, 849 |
| Mva1269I | GAATGC | 1 cut(s) | 428 |
| MvnI | CGCG | 1 cut(s) | 669 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 188, 197, 849 |
| NarI | GGCGCC | 2 cut(s) | 843, 864 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 3 cut(s) | 444, 626, 961 |
| NlaIII | CATG | 6 cut(s) | 560, 596, 642, 783, 836, 857 |
| NlaIV | GGNNCC | 3 cut(s) | 785, 844, 865 |
| OliI | CACNNNNGTG | 1 cut(s) | 452 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 556 |
| PctI | GAATGC | 1 cut(s) | 428 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 5 cut(s) | 102, 115, 236, 522, 543 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 3 cut(s) | 214, 466, 887 |
| PluTI | GGCGCC | 2 cut(s) | 846, 867 |
| PpsI | GAGTC | 3 cut(s) | 214, 466, 887 |
| Psp1406I | AACGTT | 1 cut(s) | 312 |
| PspEI | GGTNACC | 1 cut(s) | 758 |
| PspN4I | GGNNCC | 3 cut(s) | 785, 844, 865 |
| PspPI | GGNCC | 1 cut(s) | 731 |
| PsuI | RGATCY | 1 cut(s) | 626 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 7 cut(s) | 215, 231, 452, 605, 837, 858, 888 |
| SaqAI | TTAA | 2 cut(s) | 414, 422 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 3 cut(s) | 444, 626, 961 |
| Sau96I | GGNCC | 1 cut(s) | 731 |
| SchI | GAGTC | 3 cut(s) | 214, 466, 887 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| SfoI | GGCGCC | 2 cut(s) | 844, 865 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SinI | GGWCC | 1 cut(s) | 731 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 215, 231, 452, 605, 837, 858, 888 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 3 cut(s) | 17, 619, 658 |
| SsiI | CCGC | 3 cut(s) | 79, 361, 763 |
| SspDI | GGCGCC | 2 cut(s) | 842, 863 |
| SspMI | CTAG | 3 cut(s) | 45, 126, 338 |
| StyI | CCWWGG | 1 cut(s) | 630 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 4 cut(s) | 138, 315, 727, 802 |
| TaqI | TCGA | 5 cut(s) | 120, 294, 520, 623, 946 |
| TasI | AATT | 3 cut(s) | 17, 619, 658 |
| TfiI | GAWTC | 5 cut(s) | 102, 115, 236, 522, 543 |
| Tru1I | TTAA | 2 cut(s) | 414, 422 |
| Tru9I | TTAA | 2 cut(s) | 414, 422 |
| TseI | GCWGC | 1 cut(s) | 179 |
| TspDTI | ATGAA | 5 cut(s) | 272, 276, 545, 573, 590 |
| VpaK11BI | GGWCC | 1 cut(s) | 731 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 3 cut(s) | 45, 126, 338 |