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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 360 |
| AccB1I | GGYRCC | 2 cut(s) | 315, 473 |
| AciI | CCGC | 2 cut(s) | 394, 615 |
| AcoI | YGGCCR | 1 cut(s) | 460 |
| AcsI | RAATTY | 1 cut(s) | 173 |
| AcyI | GRCGYC | 2 cut(s) | 316, 474 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 311, 576 |
| AgsI | TTSAA | 2 cut(s) | 121, 698 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 33, 65 |
| AleI | CACNNNNGTG | 1 cut(s) | 111 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 555, 587 |
| AluBI | AGCT | 3 cut(s) | 496, 596, 647 |
| AluI | AGCT | 3 cut(s) | 496, 596, 647 |
| Alw21I | GWGCWC | 1 cut(s) | 598 |
| Alw26I | GTCTC | 2 cut(s) | 37, 241 |
| AoxI | GGCC | 1 cut(s) | 460 |
| ApoI | RAATTY | 1 cut(s) | 173 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 150 |
| AspLEI | GCGC | 2 cut(s) | 318, 476 |
| AspS9I | GGNCC | 1 cut(s) | 362 |
| AsuHPI | GGTGA | 1 cut(s) | 604 |
| AsuII | TTCGAA | 1 cut(s) | 510 |
| AvaII | GGWCC | 1 cut(s) | 362 |
| BaeGI | GKGCMC | 1 cut(s) | 583 |
| BalI | TGGCCA | 1 cut(s) | 462 |
| BanI | GGYRCC | 2 cut(s) | 315, 473 |
| BanII | GRGCYC | 2 cut(s) | 304, 598 |
| BauI | CACGAG | 1 cut(s) | 597 |
| BbsI | GAAGAC | 3 cut(s) | 18, 672, 705 |
| Bbv12I | GWGCWC | 1 cut(s) | 598 |
| BccI | CCATC | 2 cut(s) | 87, 241 |
| BciVI | GTATCC | 2 cut(s) | 337, 577 |
| BcoDI | GTCTC | 2 cut(s) | 37, 241 |
| BfaI | CTAG | 2 cut(s) | 18, 83 |
| BfmI | CTRYAG | 1 cut(s) | 279 |
| BfoI | RGCGCY | 2 cut(s) | 319, 477 |
| BfuI | GTATCC | 2 cut(s) | 337, 577 |
| Bme18I | GGWCC | 1 cut(s) | 362 |
| BmgT120I | GGNCC | 1 cut(s) | 362 |
| BmiI | GGNNCC | 2 cut(s) | 317, 475 |
| BmsI | GCATC | 1 cut(s) | 187 |
| BpiI | GAAGAC | 3 cut(s) | 18, 672, 705 |
| Bpu14I | TTCGAA | 1 cut(s) | 510 |
| Bsa29I | ATCGAT | 2 cut(s) | 270, 721 |
| BsaHI | GRCGYC | 2 cut(s) | 316, 474 |
| BsaI | GGTCTC | 1 cut(s) | 37 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 521, 551, 555, 585 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 311, 576 |
| Bse3DI | GCAATG | 2 cut(s) | 61, 457 |
| BseCI | ATCGAT | 2 cut(s) | 270, 721 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 311, 576 |
| BseMI | GCAATG | 2 cut(s) | 61, 457 |
| BseMII | CTCAG | 2 cut(s) | 156, 525 |
| BseSI | GKGCMC | 1 cut(s) | 583 |
| BseYI | CCCAGC | 1 cut(s) | 714 |
| BsgI | GTGCAG | 2 cut(s) | 559, 709 |
| BshFI | GGCC | 1 cut(s) | 462 |
| BshNI | GGYRCC | 2 cut(s) | 315, 473 |
| BshVI | ATCGAT | 2 cut(s) | 270, 721 |
| BsiHKAI | GWGCWC | 1 cut(s) | 598 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 311, 576 |
| BsmAI | GTCTC | 2 cut(s) | 37, 241 |
| BsmBI | CGTCTC | 1 cut(s) | 241 |
| BsnI | GGCC | 1 cut(s) | 462 |
| Bso31I | GGTCTC | 1 cut(s) | 37 |
| Bsp119I | TTCGAA | 1 cut(s) | 510 |
| Bsp1286I | GDGCHC | 3 cut(s) | 304, 583, 598 |
| Bsp143I | GATC | 4 cut(s) | 189, 288, 679, 718 |
| BspACI | CCGC | 2 cut(s) | 394, 615 |
| BspANI | GGCC | 1 cut(s) | 462 |
| BspCNI | CTCAG | 2 cut(s) | 155, 526 |
| BspDI | ATCGAT | 2 cut(s) | 270, 721 |
| BspLI | GGNNCC | 2 cut(s) | 317, 475 |
| BspT104I | TTCGAA | 1 cut(s) | 510 |
| BspT107I | GGYRCC | 2 cut(s) | 315, 473 |
| BspTNI | GGTCTC | 1 cut(s) | 37 |
| BsrDI | GCAATG | 2 cut(s) | 61, 457 |
| BssMI | GATC | 4 cut(s) | 189, 288, 679, 718 |
| BssNI | GRCGYC | 2 cut(s) | 316, 474 |
| BssSI | CACGAG | 1 cut(s) | 597 |
| Bst2BI | CACGAG | 1 cut(s) | 597 |
| Bst4CI | ACNGT | 1 cut(s) | 280 |
| Bst6I | CTCTTC | 1 cut(s) | 415 |
| BstACI | GRCGYC | 2 cut(s) | 316, 474 |
| BstBI | TTCGAA | 1 cut(s) | 510 |
| BstC8I | GCNNGC | 1 cut(s) | 494 |
| BstDEI | CTNAG | 6 cut(s) | 142, 255, 306, 338, 486, 534 |
| BstEII | GGTNACC | 1 cut(s) | 389 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 309 |
| BstH2I | RGCGCY | 2 cut(s) | 319, 477 |
| BstHHI | GCGC | 2 cut(s) | 318, 476 |
| BstKTI | GATC | 4 cut(s) | 192, 291, 682, 721 |
| BstMAI | GTCTC | 2 cut(s) | 37, 241 |
| BstMBI | GATC | 4 cut(s) | 189, 288, 679, 718 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 322, 623, 644 |
| BstPI | GGTNACC | 1 cut(s) | 389 |
| BstSFI | CTRYAG | 1 cut(s) | 279 |
| BstSLI | GKGCMC | 1 cut(s) | 583 |
| BstV2I | GAAGAC | 3 cut(s) | 18, 672, 705 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 470 |
| Bsu15I | ATCGAT | 2 cut(s) | 270, 721 |
| BsuI | GTATCC | 2 cut(s) | 337, 577 |
| BsuRI | GGCC | 1 cut(s) | 462 |
| BsuTUI | ATCGAT | 2 cut(s) | 270, 721 |
| BtgZI | GCGATG | 1 cut(s) | 215 |
| BtsIMutI | CAGTG | 2 cut(s) | 242, 410 |
| Cac8I | GCNNGC | 1 cut(s) | 494 |
| CfoI | GCGC | 2 cut(s) | 318, 476 |
| Cfr13I | GGNCC | 1 cut(s) | 362 |
| ClaI | ATCGAT | 2 cut(s) | 270, 721 |
| CseI | GACGC | 1 cut(s) | 512 |
| CviAII | CATG | 1 cut(s) | 464 |
| DdeI | CTNAG | 6 cut(s) | 142, 255, 306, 338, 486, 534 |
| DinI | GGCGCC | 2 cut(s) | 317, 475 |
| DpnI | GATC | 4 cut(s) | 191, 290, 681, 720 |
| DpnII | GATC | 4 cut(s) | 189, 288, 679, 718 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 360 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 360 |
| EaeI | YGGCCR | 1 cut(s) | 460 |
| Eam1104I | CTCTTC | 1 cut(s) | 415 |
| EarI | CTCTTC | 1 cut(s) | 415 |
| Ecl136II | GAGCTC | 1 cut(s) | 596 |
| Eco24I | GRGCYC | 2 cut(s) | 304, 598 |
| Eco31I | GGTCTC | 1 cut(s) | 37 |
| Eco47I | GGWCC | 1 cut(s) | 362 |
| Eco53kI | GAGCTC | 1 cut(s) | 596 |
| Eco91I | GGTNACC | 1 cut(s) | 389 |
| EcoICRI | GAGCTC | 1 cut(s) | 596 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 309 |
| EcoO65I | GGTNACC | 1 cut(s) | 389 |
| EcoRI | GAATTC | 1 cut(s) | 173 |
| EcoT38I | GRGCYC | 2 cut(s) | 304, 598 |
| EgeI | GGCGCC | 2 cut(s) | 317, 475 |
| EheI | GGCGCC | 2 cut(s) | 317, 475 |
| Esp3I | CGTCTC | 1 cut(s) | 241 |
| FaeI | CATG | 1 cut(s) | 467 |
| FatI | CATG | 1 cut(s) | 463 |
| FriOI | GRGCYC | 2 cut(s) | 304, 598 |
| FspBI | CTAG | 2 cut(s) | 18, 83 |
| GlaI | GCGC | 2 cut(s) | 317, 475 |
| GsaI | CCCAGC | 1 cut(s) | 718 |
| HaeII | RGCGCY | 2 cut(s) | 319, 477 |
| HaeIII | GGCC | 1 cut(s) | 462 |
| HgaI | GACGC | 1 cut(s) | 512 |
| HhaI | GCGC | 2 cut(s) | 318, 476 |
| Hin1I | GRCGYC | 2 cut(s) | 316, 474 |
| Hin1II | CATG | 1 cut(s) | 467 |
| Hin6I | GCGC | 2 cut(s) | 316, 474 |
| HinP1I | GCGC | 2 cut(s) | 316, 474 |
| HincII | GTYRAC | 1 cut(s) | 428 |
| HindII | GTYRAC | 1 cut(s) | 428 |
| HinfI | GANTC | 2 cut(s) | 65, 530 |
| HphI | GGTGA | 1 cut(s) | 604 |
| Hpy166II | GTNNAC | 1 cut(s) | 428 |
| Hpy188I | TCNGA | 2 cut(s) | 145, 535 |
| Hpy188III | TCNNGA | 4 cut(s) | 77, 131, 555, 599 |
| Hpy8I | GTNNAC | 1 cut(s) | 428 |
| HpyAV | CCTTC | 4 cut(s) | 15, 161, 238, 380 |
| HpyCH4III | ACNGT | 1 cut(s) | 280 |
| HpyCH4IV | ACGT | 2 cut(s) | 355, 430 |
| HpyCH4V | TGCA | 2 cut(s) | 540, 690 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 322, 623, 644 |
| HpyF3I | CTNAG | 6 cut(s) | 142, 255, 306, 338, 486, 534 |
| HpySE526I | ACGT | 2 cut(s) | 355, 430 |
| Hsp92I | GRCGYC | 2 cut(s) | 316, 474 |
| Hsp92II | CATG | 1 cut(s) | 467 |
| HspAI | GCGC | 2 cut(s) | 316, 474 |
| KasI | GGCGCC | 2 cut(s) | 315, 473 |
| Kzo9I | GATC | 4 cut(s) | 189, 288, 679, 718 |
| LpnPI | CCDG | 8 cut(s) | 83, 90, 345, 444, 506, 676, 696, 700 |
| LweI | GCATC | 1 cut(s) | 187 |
| MaeI | CTAG | 2 cut(s) | 18, 83 |
| MaeII | ACGT | 2 cut(s) | 355, 430 |
| MaeIII | GTNAC | 4 cut(s) | 62, 274, 389, 610 |
| MalI | GATC | 4 cut(s) | 191, 290, 681, 720 |
| MboI | GATC | 4 cut(s) | 189, 288, 679, 718 |
| MboII | GAAGA | 7 cut(s) | 20, 23, 53, 432, 614, 677, 710 |
| MhlI | GDGCHC | 3 cut(s) | 304, 583, 598 |
| MlsI | TGGCCA | 1 cut(s) | 462 |
| MluCI | AATT | 2 cut(s) | 173, 606 |
| MluNI | TGGCCA | 1 cut(s) | 462 |
| Mly113I | GGCGCC | 2 cut(s) | 316, 474 |
| MlyI | GAGTC | 2 cut(s) | 59, 539 |
| MnlI | CCTC | 7 cut(s) | 113, 305, 416, 434, 440, 466, 528 |
| Mox20I | TGGCCA | 1 cut(s) | 462 |
| MroXI | GAANNNNTTC | 1 cut(s) | 150 |
| MscI | TGGCCA | 1 cut(s) | 462 |
| MseI | TTAA | 2 cut(s) | 159, 167 |
| MslI | CAYNNNNRTG | 2 cut(s) | 111, 468 |
| Msp20I | TGGCCA | 1 cut(s) | 462 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 322, 623, 644 |
| NarI | GGCGCC | 2 cut(s) | 316, 474 |
| NdeII | GATC | 4 cut(s) | 189, 288, 679, 718 |
| NlaIII | CATG | 1 cut(s) | 467 |
| NlaIV | GGNNCC | 2 cut(s) | 317, 475 |
| NmuCI | GTSAC | 2 cut(s) | 62, 610 |
| NspV | TTCGAA | 1 cut(s) | 510 |
| OliI | CACNNNNGTG | 1 cut(s) | 111 |
| PdmI | GAANNNNTTC | 1 cut(s) | 150 |
| PleI | GAGTC | 2 cut(s) | 59, 538 |
| PluTI | GGCGCC | 2 cut(s) | 319, 477 |
| PpsI | GAGTC | 2 cut(s) | 59, 538 |
| Psp124BI | GAGCTC | 1 cut(s) | 598 |
| PspEI | GGTNACC | 1 cut(s) | 389 |
| PspFI | CCCAGC | 1 cut(s) | 714 |
| PspN4I | GGNNCC | 2 cut(s) | 317, 475 |
| PspPI | GGNCC | 1 cut(s) | 362 |
| RseI | CAYNNNNRTG | 2 cut(s) | 111, 468 |
| SacI | GAGCTC | 1 cut(s) | 598 |
| SaqAI | TTAA | 2 cut(s) | 159, 167 |
| Sau3AI | GATC | 4 cut(s) | 189, 288, 679, 718 |
| Sau96I | GGNCC | 1 cut(s) | 362 |
| SchI | GAGTC | 2 cut(s) | 59, 539 |
| SduI | GDGCHC | 3 cut(s) | 304, 583, 598 |
| SetI | ASST | 9 cut(s) | 84, 230, 358, 391, 427, 433, 498, 598, 649 |
| SfaNI | GCATC | 1 cut(s) | 187 |
| SfcI | CTRYAG | 1 cut(s) | 279 |
| SfoI | GGCGCC | 2 cut(s) | 317, 475 |
| SfuI | TTCGAA | 1 cut(s) | 510 |
| SinI | GGWCC | 1 cut(s) | 362 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 111, 468 |
| Sse9I | AATT | 2 cut(s) | 173, 606 |
| SsiI | CCGC | 2 cut(s) | 394, 615 |
| SspDI | GGCGCC | 2 cut(s) | 315, 473 |
| SspMI | CTAG | 2 cut(s) | 18, 83 |
| SstI | GAGCTC | 1 cut(s) | 598 |
| TaaI | ACNGT | 1 cut(s) | 280 |
| TaiI | ACGT | 2 cut(s) | 358, 433 |
| TaqI | TCGA | 5 cut(s) | 39, 270, 510, 556, 721 |
| TasI | AATT | 2 cut(s) | 173, 606 |
| Tru1I | TTAA | 2 cut(s) | 159, 167 |
| Tru9I | TTAA | 2 cut(s) | 159, 167 |
| TscAI | CASTG | 2 cut(s) | 249, 417 |
| TseFI | GTSAC | 2 cut(s) | 62, 610 |
| Tsp45I | GTSAC | 2 cut(s) | 62, 610 |
| TspDTI | ATGAA | 3 cut(s) | 17, 21, 563 |
| TspGWI | ACGGA | 2 cut(s) | 50, 559 |
| TspRI | CASTG | 2 cut(s) | 249, 417 |
| VpaK11BI | GGWCC | 1 cut(s) | 362 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 309 |
| XapI | RAATTY | 1 cut(s) | 173 |
| XmnI | GAANNNNTTC | 1 cut(s) | 150 |
| XspI | CTAG | 2 cut(s) | 18, 83 |