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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 729 |
| AccB1I | GGYRCC | 1 cut(s) | 569 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 938 |
| AciI | CCGC | 1 cut(s) | 361 |
| AclWI | GGATC | 2 cut(s) | 109, 930 |
| AcsI | RAATTY | 1 cut(s) | 428 |
| AfaI | GTAC | 3 cut(s) | 112, 254, 384 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 64, 262, 751, 772, 938 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AgsI | TTSAA | 1 cut(s) | 376 |
| AjiI | CACGTC | 2 cut(s) | 136, 238 |
| AluBI | AGCT | 6 cut(s) | 24, 105, 155, 179, 562, 584 |
| AluI | AGCT | 6 cut(s) | 24, 105, 155, 179, 562, 584 |
| Alw21I | GWGCWC | 3 cut(s) | 81, 243, 780 |
| Alw26I | GTCTC | 1 cut(s) | 32 |
| Alw44I | GTGCAC | 2 cut(s) | 77, 776 |
| AlwI | GGATC | 2 cut(s) | 109, 930 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 938 |
| Ama87I | CYCGRG | 1 cut(s) | 293 |
| ApaLI | GTGCAC | 2 cut(s) | 77, 776 |
| ApeKI | GCWGC | 3 cut(s) | 155, 158, 298 |
| ApoI | RAATTY | 1 cut(s) | 428 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AspLEI | GCGC | 2 cut(s) | 50, 671 |
| AspS9I | GGNCC | 3 cut(s) | 67, 268, 731 |
| AsuHPI | GGTGA | 1 cut(s) | 919 |
| AvaI | CYCGRG | 1 cut(s) | 293 |
| AvaII | GGWCC | 3 cut(s) | 67, 268, 731 |
| BaeGI | GKGCMC | 2 cut(s) | 81, 780 |
| BanI | GGYRCC | 1 cut(s) | 569 |
| BbsI | GAAGAC | 1 cut(s) | 476 |
| Bbv12I | GWGCWC | 3 cut(s) | 81, 243, 780 |
| BbvI | GCAGC | 3 cut(s) | 142, 145, 310 |
| BccI | CCATC | 3 cut(s) | 215, 342, 418 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcoDI | GTCTC | 1 cut(s) | 32 |
| BfaI | CTAG | 3 cut(s) | 35, 537, 624 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| BisI | GCNGC | 3 cut(s) | 156, 159, 299 |
| BlsI | GCNGC | 3 cut(s) | 157, 160, 300 |
| Bme18I | GGWCC | 3 cut(s) | 67, 268, 731 |
| BmeT110I | CYCGRG | 1 cut(s) | 293 |
| BmgBI | CACGTC | 2 cut(s) | 136, 238 |
| BmgT120I | GGNCC | 3 cut(s) | 67, 268, 731 |
| BmiI | GGNNCC | 5 cut(s) | 68, 270, 571, 637, 784 |
| BmsI | GCATC | 3 cut(s) | 94, 552, 818 |
| BpiI | GAAGAC | 1 cut(s) | 476 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 13, 45 |
| BpmI | CTGGAG | 1 cut(s) | 671 |
| BpuEI | CTTGAG | 1 cut(s) | 127 |
| BsaBI | GATNNNNATC | 2 cut(s) | 891, 897 |
| BsaJI | CCNNGG | 3 cut(s) | 630, 675, 786 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 94, 124 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 64, 262, 751, 772, 938 |
| Bse1I | ACTGG | 1 cut(s) | 943 |
| Bse8I | GATNNNNATC | 2 cut(s) | 891, 897 |
| BseDI | CCNNGG | 3 cut(s) | 630, 675, 786 |
| BseGI | GGATG | 1 cut(s) | 809 |
| BseJI | GATNNNNATC | 2 cut(s) | 891, 897 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 64, 262, 751, 772, 938 |
| BseNI | ACTGG | 1 cut(s) | 943 |
| BseRI | GAGGAG | 2 cut(s) | 135, 278 |
| BseSI | GKGCMC | 2 cut(s) | 81, 780 |
| BseXI | GCAGC | 3 cut(s) | 142, 145, 310 |
| BseYI | CCCAGC | 1 cut(s) | 813 |
| BshNI | GGYRCC | 1 cut(s) | 569 |
| BsiHKAI | GWGCWC | 3 cut(s) | 81, 243, 780 |
| BsiHKCI | CYCGRG | 1 cut(s) | 293 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 64, 262, 751, 772, 938 |
| BsmAI | GTCTC | 1 cut(s) | 32 |
| BsoBI | CYCGRG | 1 cut(s) | 293 |
| Bsp1286I | GDGCHC | 3 cut(s) | 81, 243, 780 |
| Bsp143I | GATC | 5 cut(s) | 114, 880, 892, 898, 922 |
| Bsp19I | CCATGG | 1 cut(s) | 630 |
| BspACI | CCGC | 1 cut(s) | 361 |
| BspHI | TCATGA | 2 cut(s) | 216, 556 |
| BspLI | GGNNCC | 5 cut(s) | 68, 270, 571, 637, 784 |
| BspPI | GGATC | 2 cut(s) | 109, 930 |
| BspT107I | GGYRCC | 1 cut(s) | 569 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BsrI | ACTGG | 1 cut(s) | 943 |
| BssECI | CCNNGG | 3 cut(s) | 630, 675, 786 |
| BssMI | GATC | 5 cut(s) | 114, 880, 892, 898, 922 |
| BssT1I | CCWWGG | 2 cut(s) | 630, 675 |
| Bst4CI | ACNGT | 1 cut(s) | 787 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstDEI | CTNAG | 3 cut(s) | 337, 702, 902 |
| BstDSI | CCRYGG | 2 cut(s) | 630, 786 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 260 |
| BstF5I | GGATG | 1 cut(s) | 809 |
| BstHHI | GCGC | 2 cut(s) | 50, 671 |
| BstKTI | GATC | 5 cut(s) | 117, 883, 895, 901, 925 |
| BstMAI | GTCTC | 1 cut(s) | 32 |
| BstMBI | GATC | 5 cut(s) | 114, 880, 892, 898, 922 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 806 |
| BstNSI | RCATGY | 1 cut(s) | 804 |
| BstSLI | GKGCMC | 2 cut(s) | 81, 780 |
| BstV1I | GCAGC | 3 cut(s) | 142, 145, 310 |
| BstV2I | GAAGAC | 1 cut(s) | 476 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BtgI | CCRYGG | 2 cut(s) | 630, 786 |
| BtrI | CACGTC | 2 cut(s) | 136, 238 |
| BtsCI | GGATG | 1 cut(s) | 809 |
| BtsIMutI | CAGTG | 1 cut(s) | 447 |
| CaiI | CAGNNNCTG | 1 cut(s) | 938 |
| CciI | TCATGA | 2 cut(s) | 216, 556 |
| CfoI | GCGC | 2 cut(s) | 50, 671 |
| Cfr13I | GGNCC | 3 cut(s) | 67, 268, 731 |
| CseI | GACGC | 2 cut(s) | 549, 693 |
| Csp6I | GTAC | 3 cut(s) | 111, 253, 383 |
| CviAII | CATG | 7 cut(s) | 217, 229, 557, 574, 631, 801, 868 |
| CviQI | GTAC | 3 cut(s) | 111, 253, 383 |
| DdeI | CTNAG | 3 cut(s) | 337, 702, 902 |
| DpnI | GATC | 5 cut(s) | 116, 882, 894, 900, 924 |
| DpnII | GATC | 5 cut(s) | 114, 880, 892, 898, 922 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 729 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 729 |
| Eco130I | CCWWGG | 2 cut(s) | 630, 675 |
| Eco47I | GGWCC | 3 cut(s) | 67, 268, 731 |
| Eco88I | CYCGRG | 1 cut(s) | 293 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 260 |
| EcoO109I | RGGNCCY | 1 cut(s) | 268 |
| EcoRI | GAATTC | 1 cut(s) | 428 |
| EcoT14I | CCWWGG | 2 cut(s) | 630, 675 |
| ErhI | CCWWGG | 2 cut(s) | 630, 675 |
| FaeI | CATG | 7 cut(s) | 220, 232, 560, 577, 634, 804, 871 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FatI | CATG | 7 cut(s) | 216, 228, 556, 573, 630, 800, 867 |
| Fnu4HI | GCNGC | 3 cut(s) | 156, 159, 299 |
| FokI | GGATG | 1 cut(s) | 796 |
| Fsp4HI | GCNGC | 3 cut(s) | 156, 159, 299 |
| FspBI | CTAG | 3 cut(s) | 35, 537, 624 |
| GlaI | GCGC | 2 cut(s) | 49, 670 |
| GluI | GCNGC | 3 cut(s) | 156, 159, 299 |
| GsaI | CCCAGC | 1 cut(s) | 817 |
| GsuI | CTGGAG | 1 cut(s) | 671 |
| HgaI | GACGC | 2 cut(s) | 549, 693 |
| HhaI | GCGC | 2 cut(s) | 50, 671 |
| Hin1II | CATG | 7 cut(s) | 220, 232, 560, 577, 634, 804, 871 |
| Hin6I | GCGC | 2 cut(s) | 48, 669 |
| HinP1I | GCGC | 2 cut(s) | 48, 669 |
| HinfI | GANTC | 3 cut(s) | 320, 472, 653 |
| HphI | GGTGA | 1 cut(s) | 919 |
| Hpy166II | GTNNAC | 3 cut(s) | 79, 437, 778 |
| Hpy188I | TCNGA | 1 cut(s) | 400 |
| Hpy8I | GTNNAC | 3 cut(s) | 79, 437, 778 |
| HpyAV | CCTTC | 2 cut(s) | 493, 749 |
| HpyCH4III | ACNGT | 1 cut(s) | 787 |
| HpyCH4IV | ACGT | 5 cut(s) | 135, 237, 312, 724, 839 |
| HpyCH4V | TGCA | 3 cut(s) | 79, 778, 824 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 806 |
| HpyF3I | CTNAG | 3 cut(s) | 337, 702, 902 |
| HpySE526I | ACGT | 5 cut(s) | 135, 237, 312, 724, 839 |
| Hsp92II | CATG | 7 cut(s) | 220, 232, 560, 577, 634, 804, 871 |
| HspAI | GCGC | 2 cut(s) | 48, 669 |
| Kzo9I | GATC | 5 cut(s) | 114, 880, 892, 898, 922 |
| LmnI | GCTCC | 4 cut(s) | 34, 102, 246, 691 |
| Lsp1109I | GCAGC | 3 cut(s) | 142, 145, 310 |
| LweI | GCATC | 3 cut(s) | 94, 552, 818 |
| MaeI | CTAG | 3 cut(s) | 35, 537, 624 |
| MaeII | ACGT | 5 cut(s) | 135, 237, 312, 724, 839 |
| MaeIII | GTNAC | 1 cut(s) | 5 |
| MalI | GATC | 5 cut(s) | 116, 882, 894, 900, 924 |
| MboI | GATC | 5 cut(s) | 114, 880, 892, 898, 922 |
| MboII | GAAGA | 3 cut(s) | 481, 622, 890 |
| MhlI | GDGCHC | 3 cut(s) | 81, 243, 780 |
| MluCI | AATT | 7 cut(s) | 394, 428, 564, 645, 658, 715, 949 |
| MlyI | GAGTC | 2 cut(s) | 466, 662 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MseI | TTAA | 3 cut(s) | 90, 461, 948 |
| MslI | CAYNNNNRTG | 3 cut(s) | 215, 231, 605 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 806 |
| NcoI | CCATGG | 1 cut(s) | 630 |
| NdeII | GATC | 5 cut(s) | 114, 880, 892, 898, 922 |
| NlaIII | CATG | 7 cut(s) | 220, 232, 560, 577, 634, 804, 871 |
| NlaIV | GGNNCC | 5 cut(s) | 68, 270, 571, 637, 784 |
| NspI | RCATGY | 1 cut(s) | 804 |
| PaeR7I | CTCGAG | 1 cut(s) | 293 |
| PagI | TCATGA | 2 cut(s) | 216, 556 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 691 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 1 cut(s) | 320 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 938 |
| PkrI | GCNGC | 3 cut(s) | 157, 160, 300 |
| PleI | GAGTC | 2 cut(s) | 466, 661 |
| PpsI | GAGTC | 2 cut(s) | 466, 661 |
| PpuMI | RGGWCCY | 1 cut(s) | 268 |
| Psp5II | RGGWCCY | 1 cut(s) | 268 |
| PspFI | CCCAGC | 1 cut(s) | 813 |
| PspN4I | GGNNCC | 5 cut(s) | 68, 270, 571, 637, 784 |
| PspPI | GGNCC | 3 cut(s) | 67, 268, 731 |
| PspPPI | RGGWCCY | 1 cut(s) | 268 |
| PspXI | VCTCGAGB | 1 cut(s) | 293 |
| PstNI | CAGNNNCTG | 1 cut(s) | 938 |
| RsaI | GTAC | 3 cut(s) | 112, 254, 384 |
| RsaNI | GTAC | 3 cut(s) | 111, 253, 383 |
| RseI | CAYNNNNRTG | 3 cut(s) | 215, 231, 605 |
| SaqAI | TTAA | 3 cut(s) | 90, 461, 948 |
| SatI | GCNGC | 3 cut(s) | 156, 159, 299 |
| Sau3AI | GATC | 5 cut(s) | 114, 880, 892, 898, 922 |
| Sau96I | GGNCC | 3 cut(s) | 67, 268, 731 |
| SchI | GAGTC | 2 cut(s) | 466, 662 |
| SduI | GDGCHC | 3 cut(s) | 81, 243, 780 |
| SfaNI | GCATC | 3 cut(s) | 94, 552, 818 |
| Sfr274I | CTCGAG | 1 cut(s) | 293 |
| SinI | GGWCC | 3 cut(s) | 67, 268, 731 |
| SlaI | CTCGAG | 1 cut(s) | 293 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 215, 231, 605 |
| SmlI | CTYRAG | 3 cut(s) | 89, 106, 293 |
| SmoI | CTYRAG | 3 cut(s) | 89, 106, 293 |
| Sse9I | AATT | 7 cut(s) | 394, 428, 564, 645, 658, 715, 949 |
| SsiI | CCGC | 1 cut(s) | 361 |
| SspMI | CTAG | 3 cut(s) | 35, 537, 624 |
| StyI | CCWWGG | 2 cut(s) | 630, 675 |
| TaaI | ACNGT | 1 cut(s) | 787 |
| TaiI | ACGT | 5 cut(s) | 138, 240, 315, 727, 842 |
| TaqI | TCGA | 1 cut(s) | 294 |
| TasI | AATT | 7 cut(s) | 394, 428, 564, 645, 658, 715, 949 |
| TatI | WGTACW | 1 cut(s) | 382 |
| TfiI | GAWTC | 1 cut(s) | 320 |
| Tru1I | TTAA | 3 cut(s) | 90, 461, 948 |
| Tru9I | TTAA | 3 cut(s) | 90, 461, 948 |
| TscAI | CASTG | 1 cut(s) | 454 |
| TseI | GCWGC | 3 cut(s) | 155, 158, 298 |
| TspDTI | ATGAA | 6 cut(s) | 205, 210, 245, 518, 545, 590 |
| TspGWI | ACGGA | 3 cut(s) | 59, 305, 795 |
| TspRI | CASTG | 1 cut(s) | 454 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 938 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| VneI | GTGCAC | 2 cut(s) | 77, 776 |
| VpaK11BI | GGWCC | 3 cut(s) | 67, 268, 731 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 260 |
| XapI | RAATTY | 1 cut(s) | 428 |
| XbaI | TCTAGA | 1 cut(s) | 623 |
| XceI | RCATGY | 1 cut(s) | 804 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 646 |
| XhoI | CTCGAG | 1 cut(s) | 293 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 3 cut(s) | 35, 537, 624 |